Genomic map of Mycobacterium phage Trouble (NC_022062)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022062
Definition
Mycobacterium phage Trouble, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52102
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
63.6
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008409741.1 NC_022062_p9 LysA phrog_317 endolysin lysis 1 4899 6332
YP_008409779.1 NC_022062_p47 hypothetical protein phrog_6173 unknown function unknown function -1 35925 36179
YP_008409756.1 NC_022062_p24 tape measure protein phrog_305 tail length tape measure protein tail 1 16670 19141
YP_008409765.1 NC_022062_p33 D-ala-D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 26765 28243
YP_008409746.1 NC_022062_p14 scaffold protein phrog_233 head scaffolding protein head and packaging 1 11374 11886
YP_008409735.1 NC_022062_p3 hypothetical protein phrog_2830 unknown function unknown function 1 1535 1765
YP_008409812.1 NC_022062_p80 hypothetical protein phrog_1155 unknown function unknown function -1 48124 48312
YP_008409755.1 NC_022062_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15760 16236
YP_008409803.1 NC_022062_p71 hypothetical protein phrog_13709 unknown function unknown function -1 45009 45224
YP_008409813.1 NC_022062_p81 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48312 48512
YP_008409751.1 NC_022062_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14032 14427
YP_008409814.1 NC_022062_p82 hypothetical protein phrog_11336 HNH endonuclease DNA, RNA and nucleotide metabolism -1 48509 48703
YP_008409749.1 NC_022062_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13221 13670
YP_008409820.1 NC_022062_p88 hypothetical protein phrog_2212 unknown function unknown function -1 50124 50243
YP_008409787.1 NC_022062_p55 hypothetical protein phrog_1503 unknown function unknown function -1 39141 39314
YP_008409771.1 NC_022062_p39 hypothetical protein phrog_1966 unknown function unknown function -1 31995 32267
YP_008409770.1 NC_022062_p38 serine integrase phrog_95 integrase integration and excision 1 30371 31873
YP_008409783.1 NC_022062_p51 hypothetical protein phrog_499 unknown function unknown function -1 37256 37462
YP_008409736.1 NC_022062_p4 HNH domain protein phrog_3593 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2065 2544
YP_008409810.1 NC_022062_p78 hypothetical protein phrog_1720 unknown function unknown function -1 47658 47927
YP_008409792.1 NC_022062_p60 hypothetical protein phrog_397 unknown function unknown function -1 40722 40856
YP_008409798.1 NC_022062_p66 hypothetical protein phrog_520 unknown function unknown function -1 42604 42897
YP_008409816.1 NC_022062_p84 hypothetical protein phrog_932 unknown function unknown function -1 48926 49075
YP_008409802.1 NC_022062_p70 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44194 45030
YP_008409769.1 NC_022062_p37 hypothetical protein phrog_411 unknown function unknown function 1 29935 30219
YP_008409762.1 NC_022062_p30 hypothetical protein phrog_981 minor tail protein tail 1 24218 24550
YP_008409754.1 NC_022062_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15760 16658
YP_008409811.1 NC_022062_p79 hypothetical protein phrog_1387 unknown function unknown function -1 47924 48127
YP_008409773.1 NC_022062_p41 hypothetical protein phrog_2035 unknown function unknown function -1 32650 32820
YP_008409788.1 NC_022062_p56 hypothetical protein phrog_474 phosphofructokinase other -1 39311 39709
YP_008409781.1 NC_022062_p49 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 36437 36916
YP_008409782.1 NC_022062_p50 hypothetical protein phrog_2094 unknown function unknown function -1 36951 37283
YP_008409797.1 NC_022062_p65 hypothetical protein phrog_1705 unknown function unknown function -1 42461 42607
YP_008409805.1 NC_022062_p73 hypothetical protein phrog_3851 unknown function unknown function -1 45541 45855
YP_008409743.1 NC_022062_p11 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7310 8998
YP_008409790.1 NC_022062_p58 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 40073 40588
YP_008409744.1 NC_022062_p12 portal protein phrog_104 portal protein head and packaging 1 8995 10437
YP_008409817.1 NC_022062_p85 hypothetical protein phrog_1387 unknown function unknown function -1 49072 49293
YP_008409774.1 NC_022062_p42 hypothetical protein phrog_1860 unknown function unknown function -1 32817 32903
YP_008409822.1 NC_022062_p90 hypothetical protein phrog_828 unknown function unknown function 1 50598 50804
YP_008409739.1 NC_022062_p7 hypothetical protein phrog_1718 tail protein tail 1 4374 4634
YP_008409815.1 NC_022062_p83 hypothetical protein phrog_8345 unknown function unknown function -1 48700 48906
YP_008409750.1 NC_022062_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 13670 14032
YP_008409776.1 NC_022062_p44 hypothetical protein phrog_383 unknown function unknown function -1 33190 33549
YP_008409791.1 NC_022062_p59 hypothetical protein phrog_1783 unknown function unknown function -1 40567 40725
YP_008409796.1 NC_022062_p64 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41665 42474
YP_008409824.1 NC_022062_p92 hypothetical protein phrog_3574 unknown function unknown function 1 51117 51305
YP_008409742.1 NC_022062_p10 LysB phrog_102 endolysin lysis 1 6322 7290
YP_008409763.1 NC_022062_p31 hypothetical protein phrog_1397 unknown function unknown function 1 24547 24894
YP_008409800.1 NC_022062_p68 DNA methyltransferase phrog_67 DNA methyltransferase other -1 43082 43948
YP_008409825.1 NC_022062_p93 hypothetical protein phrog_18559 unknown function unknown function -1 51348 51497
YP_008409826.1 NC_022062_p94 hypothetical protein singleton unknown function unknown function -1 51570 51815
YP_008409745.1 NC_022062_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10434 11315
YP_008409819.1 NC_022062_p87 hypothetical protein phrog_5533 unknown function unknown function -1 49909 50127
YP_008409764.1 NC_022062_p32 minor tail subunit phrog_346 minor tail protein tail 1 24919 26772
YP_008409821.1 NC_022062_p89 hypothetical protein phrog_2985 unknown function unknown function 1 50275 50514
YP_008409759.1 NC_022062_p27 hypothetical protein phrog_1543 minor tail protein tail 1 21738 21920
YP_008409799.1 NC_022062_p67 DNA binding domain protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 42894 43085
YP_008409778.1 NC_022062_p46 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 34073 35902
YP_008409738.1 NC_022062_p6 hypothetical protein phrog_553 minor tail protein tail 1 3659 4360
YP_008409808.1 NC_022062_p76 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47063 47362
YP_008409780.1 NC_022062_p48 hypothetical protein phrog_1781 unknown function unknown function -1 36176 36406
YP_008409777.1 NC_022062_p45 HNH domain protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 33572 34048
YP_008409761.1 NC_022062_p29 hypothetical protein phrog_352 minor tail protein tail 1 23760 24206
YP_008409806.1 NC_022062_p74 hypothetical protein phrog_1809 unknown function unknown function -1 45852 46247
YP_008409775.1 NC_022062_p43 hypothetical protein phrog_1971 unknown function unknown function -1 32909 33193
YP_008409748.1 NC_022062_p16 hypothetical protein phrog_1857 head-tail connector protein connector 1 12961 13221
YP_008409753.1 NC_022062_p21 major tail subunit phrog_117 major tail protein tail 1 14886 15737
YP_008409733.1 NC_022062_p1 HNH domain protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 534 893
YP_008409752.1 NC_022062_p20 hypothetical protein phrog_123 tail terminator connector 1 14431 14877
YP_008409767.1 NC_022062_p35 hypothetical protein phrog_1560 unknown function unknown function 1 28666 28857
YP_008409760.1 NC_022062_p28 minor tail subunit phrog_110 minor tail protein tail 1 21920 23722
YP_008409758.1 NC_022062_p26 minor tail subunit phrog_106 minor tail protein tail 1 19662 21719
YP_008409766.1 NC_022062_p34 hypothetical protein phrog_644 unknown function unknown function 1 28333 28656
YP_008409804.1 NC_022062_p72 hypothetical protein phrog_1584 unknown function unknown function -1 45221 45544
YP_008409809.1 NC_022062_p77 hypothetical protein phrog_7977 unknown function unknown function -1 47355 47657
YP_008409784.1 NC_022062_p52 RNA polymerase sigma factor phrog_354 sigma-K factor transcription regulation -1 37459 38244
YP_008409740.1 NC_022062_p8 hypothetical protein phrog_747 unknown function unknown function 1 4642 4899
YP_008409823.1 NC_022062_p91 hypothetical protein phrog_17708 unknown function unknown function 1 50852 51013
YP_008409793.1 NC_022062_p61 Endo VII protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40853 41329
YP_008409801.1 NC_022062_p69 hypothetical protein phrog_16650 unknown function unknown function -1 43954 44163
YP_008409795.1 NC_022062_p63 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41399 41668
YP_008409737.1 NC_022062_p5 tail protein phrog_1197 tail protein tail 1 2579 3649
YP_008409794.1 NC_022062_p62 hypothetical protein phrog_1019 unknown function unknown function -1 41316 41402
YP_008409786.1 NC_022062_p54 RDF protein phrog_221 metallo-phosphoesterase other -1 38377 39144
YP_008409747.1 NC_022062_p15 major capsid protein phrog_10 major head protein head and packaging 1 11897 12904
YP_008409807.1 NC_022062_p75 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46289 46975
YP_008409818.1 NC_022062_p86 hypothetical protein phrog_5017 unknown function unknown function -1 49562 49909
YP_008409772.1 NC_022062_p40 hypothetical protein phrog_2387 nucleotide kinase other -1 32264 32653
YP_008409785.1 NC_022062_p53 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 38237 38377
YP_008409789.1 NC_022062_p57 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39706 40284
YP_008409734.1 NC_022062_p2 hypothetical protein phrog_226 minor tail protein tail 1 928 1362
YP_008409768.1 NC_022062_p36 hypothetical protein phrog_754 minor tail protein tail 1 28854 29813
YP_008409757.1 NC_022062_p25 HNH domain protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 19144 19638