| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022065 |
Definition |
Mycobacterium phage Contagion, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
74533 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
140 |
%GC |
63.05 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008410024.1 | NC_022065_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1309 | 1551 |
| YP_008410114.1 | NC_022065_p96 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59261 | 59701 |
| YP_008410063.1 | NC_022065_p45 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 35270 | 35485 |
| YP_008410057.1 | NC_022065_p39 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33303 | 33689 |
| YP_008410103.1 | NC_022065_p85 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 53312 | 53680 |
| YP_008410151.1 | NC_022065_p133 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 72176 | 72349 |
| YP_008410095.1 | NC_022065_p77 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49301 | 50563 |
| YP_008410131.1 | NC_022065_p113 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 66195 | 66407 |
| YP_008410112.1 | NC_022065_p94 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57617 | 58159 |
| YP_008410156.1 | NC_022065_p138 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 73319 | 73666 |
| YP_008410141.1 | NC_022065_p123 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 68625 | 69014 |
| YP_008410105.1 | NC_022065_p87 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 53772 | 55097 |
| YP_008410097.1 | NC_022065_p79 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 50730 | 51005 |
| YP_008410070.1 | NC_022065_p52 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 38990 | 39430 |
| YP_008410056.1 | NC_022065_p38 | hypothetical protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 33121 | 33300 |
| YP_008410139.1 | NC_022065_p121 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 67825 | 67986 |
| YP_008410025.1 | NC_022065_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1551 | 1859 |
| YP_008410110.1 | NC_022065_p92 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56840 | 57283 |
| YP_008410020.1 | NC_022065_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_008410108.1 | NC_022065_p90 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 56229 | 56387 |
| YP_008410021.1 | NC_022065_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| YP_008410125.1 | NC_022065_p107 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 63424 | 63903 |
| YP_008410140.1 | NC_022065_p122 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 68365 | 68628 |
| YP_008410037.1 | NC_022065_p19 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 11977 | 12438 |
| YP_008410033.1 | NC_022065_p15 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9765 | 10100 |
| YP_008410041.1 | NC_022065_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19253 | 20932 |
| YP_008410118.1 | NC_022065_p100 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 61149 | 61439 |
| YP_008410136.1 | NC_022065_p118 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 67397 | 67534 |
| YP_008410049.1 | NC_022065_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 29145 | 30647 |
| YP_008410143.1 | NC_022065_p125 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 69389 | 69757 |
| YP_008410158.1 | NC_022065_p140 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 73952 | 74299 |
| YP_008410081.1 | NC_022065_p63 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43364 | 44332 |
| YP_008410072.1 | NC_022065_p54 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 39742 | 39879 |
| YP_008410054.1 | NC_022065_p36 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 32639 | 32884 |
| YP_008410073.1 | NC_022065_p55 | pentapeptide repeat domain protein | phrog_923 | unknown function | unknown function | 1 | 39876 | 40721 |
| YP_008410124.1 | NC_022065_p106 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 63047 | 63421 |
| YP_008410130.1 | NC_022065_p112 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 66029 | 66202 |
| YP_008410028.1 | NC_022065_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4784 | 6343 |
| YP_008410068.1 | NC_022065_p50 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 37905 | 38144 |
| YP_008410155.1 | NC_022065_p137 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 73063 | 73308 |
| YP_008410090.1 | NC_022065_p72 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 47376 | 47789 |
| YP_008410117.1 | NC_022065_p99 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60792 | 61148 |
| YP_008410039.1 | NC_022065_p21 | tape measure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 12841 | 17574 |
| YP_008410086.1 | NC_022065_p68 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46231 | 46599 |
| YP_008410128.1 | NC_022065_p110 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 64946 | 65908 |
| YP_008410079.1 | NC_022065_p61 | hypothetical protein | phrog_16636 | secreted protein | other | 1 | 42565 | 43041 |
| YP_008410067.1 | NC_022065_p49 | integrase (Y-int) | phrog_1 | integrase | integration and excision | 1 | 36885 | 37766 |
| YP_008410038.1 | NC_022065_p20 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 12570 | 12848 |
| YP_008410043.1 | NC_022065_p25 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 21791 | 24187 |
| YP_008410023.1 | NC_022065_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 776 | 1237 |
| YP_008410104.1 | NC_022065_p86 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 53653 | 53775 |
| YP_008410052.1 | NC_022065_p34 | lysin B | phrog_102 | endolysin | lysis | 1 | 31362 | 32219 |
| YP_008410026.1 | NC_022065_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1904 | 4567 |
| YP_008410148.1 | NC_022065_p130 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 70996 | 71232 |
| YP_008410116.1 | NC_022065_p98 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 60598 | 60795 |
| YP_008410058.1 | NC_022065_p40 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 33737 | 34345 |
| YP_008410157.1 | NC_022065_p139 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 73741 | 73962 |
| YP_008410032.1 | NC_022065_p14 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9186 | 9752 |
| YP_008410089.1 | NC_022065_p71 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 47146 | 47379 |
| YP_008410069.1 | NC_022065_p51 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 38122 | 38895 |
| YP_008410152.1 | NC_022065_p134 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 72346 | 72591 |
| YP_008410065.1 | NC_022065_p47 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 35650 | 36045 |
| YP_008410094.1 | NC_022065_p76 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48973 | 49308 |
| YP_008410111.1 | NC_022065_p93 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57285 | 57620 |
| YP_008410061.1 | NC_022065_p43 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 34877 | 35044 |
| YP_008410099.1 | NC_022065_p81 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 51194 | 51559 |
| YP_008410078.1 | NC_022065_p60 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 42392 | 42520 |
| YP_008410062.1 | NC_022065_p44 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 35041 | 35277 |
| YP_008410129.1 | NC_022065_p111 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 65905 | 66042 |
| YP_008410083.1 | NC_022065_p65 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44735 | 45457 |
| YP_008410154.1 | NC_022065_p136 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 72803 | 73060 |
| YP_008410064.1 | NC_022065_p46 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 35504 | 35650 |
| YP_008410109.1 | NC_022065_p91 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56384 | 56836 |
| YP_008410138.1 | NC_022065_p120 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 67710 | 67841 |
| YP_008410106.1 | NC_022065_p88 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 55134 | 55955 |
| YP_008410092.1 | NC_022065_p74 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 48093 | 48329 |
| YP_008410126.1 | NC_022065_p108 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 63914 | 64699 |
| YP_008410113.1 | NC_022065_p95 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 58156 | 59268 |
| YP_008410035.1 | NC_022065_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10455 | 10859 |
| YP_008410059.1 | NC_022065_p41 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 34342 | 34707 |
| YP_008410096.1 | NC_022065_p78 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50560 | 50748 |
| YP_008410132.1 | NC_022065_p114 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 66469 | 66642 |
| YP_008410101.1 | NC_022065_p83 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 51915 | 52109 |
| YP_008410055.1 | NC_022065_p37 | hypothetical protein | phrog_27547 | unknown function | unknown function | -1 | 32924 | 33043 |
| YP_008410142.1 | NC_022065_p124 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 69132 | 69392 |
| YP_008410134.1 | NC_022065_p116 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 67049 | 67216 |
| YP_008410034.1 | NC_022065_p16 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10088 | 10477 |
| YP_008410077.1 | NC_022065_p59 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 42049 | 42426 |
| YP_008410149.1 | NC_022065_p131 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 71248 | 71784 |
| YP_008410093.1 | NC_022065_p75 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 48326 | 48976 |
| YP_008410031.1 | NC_022065_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8995 | 9186 |
| YP_008410022.1 | NC_022065_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 783 |
| YP_008410075.1 | NC_022065_p57 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 40866 | 41144 |
| YP_008410042.1 | NC_022065_p24 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 20941 | 21774 |
| YP_008410107.1 | NC_022065_p89 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 55952 | 56212 |
| YP_008410088.1 | NC_022065_p70 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 46970 | 47149 |
| YP_008410121.1 | NC_022065_p103 | hypothetical protein | phrog_15491 | unknown function | unknown function | 1 | 62071 | 62187 |
| YP_008410066.1 | NC_022065_p48 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 36332 | 36634 |
| YP_008410145.1 | NC_022065_p127 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 70227 | 70556 |
| YP_008410135.1 | NC_022065_p117 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 67200 | 67400 |
| YP_008410091.1 | NC_022065_p73 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47786 | 48103 |
| YP_008410133.1 | NC_022065_p115 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 66639 | 67052 |
| YP_008410137.1 | NC_022065_p119 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 67531 | 67710 |
| YP_008410115.1 | NC_022065_p97 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 59790 | 60596 |
| YP_008410047.1 | NC_022065_p29 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28469 | 28654 |
| YP_008410051.1 | NC_022065_p33 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31027 | 31365 |
| YP_008410085.1 | NC_022065_p67 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 45761 | 46231 |
| YP_008410082.1 | NC_022065_p64 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 44329 | 44742 |
| YP_008410150.1 | NC_022065_p132 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 71788 | 72171 |
| YP_008410050.1 | NC_022065_p32 | holin | phrog_526 | holin | lysis | 1 | 30651 | 31034 |
| YP_008410060.1 | NC_022065_p42 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 34704 | 34877 |
| YP_008410030.1 | NC_022065_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7435 | 8928 |
| YP_008410127.1 | NC_022065_p109 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 64696 | 64938 |
| YP_008410074.1 | NC_022065_p56 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 40723 | 40869 |
| YP_008410084.1 | NC_022065_p66 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 45450 | 45761 |
| YP_008410046.1 | NC_022065_p28 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28054 | 28482 |
| YP_008410029.1 | NC_022065_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6346 | 7347 |
| YP_008410120.1 | NC_022065_p102 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61808 | 62098 |
| YP_008410100.1 | NC_022065_p82 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51556 | 51918 |
| YP_008410053.1 | NC_022065_p35 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32216 | 32632 |
| YP_008410027.1 | NC_022065_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4579 | 4800 |
| YP_008410153.1 | NC_022065_p135 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 72588 | 72800 |
| YP_008410122.1 | NC_022065_p104 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62552 | 62776 |
| YP_008410044.1 | NC_022065_p26 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24184 | 27021 |
| YP_008410102.1 | NC_022065_p84 | Pnk protein | phrog_505 | polynucleotide kinase | other | 1 | 52264 | 53205 |
| YP_008410071.1 | NC_022065_p53 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 39647 | 39745 |
| YP_008410048.1 | NC_022065_p30 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28787 | 29071 |
| YP_008410119.1 | NC_022065_p101 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61444 | 61755 |
| YP_008410098.1 | NC_022065_p80 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 50980 | 51201 |
| YP_008410080.1 | NC_022065_p62 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 43038 | 43367 |
| YP_008410036.1 | NC_022065_p18 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10886 | 11857 |
| YP_008410146.1 | NC_022065_p128 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 70558 | 70875 |
| YP_008410144.1 | NC_022065_p126 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 69754 | 70212 |
| YP_008410045.1 | NC_022065_p27 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27022 | 27984 |
| YP_008410147.1 | NC_022065_p129 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 70881 | 71006 |
| YP_008410087.1 | NC_022065_p69 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46596 | 46970 |
| YP_008410076.1 | NC_022065_p58 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 41688 | 41993 |
| YP_008410040.1 | NC_022065_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17604 | 19265 |
| YP_008410123.1 | NC_022065_p105 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62773 | 63036 |
| YP_008410019.1 | NC_022065_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |