| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022071 |
Definition |
Mycobacterium phage Crossroads, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus. |
DB of origin |
REFSEQ |
Length |
76129 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
133 |
%GC |
58.94 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008410913.1 | NC_022071_p38 | integrase | phrog_1 | integrase | integration and excision | 1 | 31657 | 32964 |
| YP_008410877.1 | NC_022071_p2 | hypothetical protein | phrog_1496 | terminase small subunit | head and packaging | 1 | 477 | 866 |
| YP_008410957.1 | NC_022071_p82 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 54290 | 54694 |
| YP_008410958.1 | NC_022071_p83 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 54684 | 54914 |
| YP_008410895.1 | NC_022071_p20 | hypothetical protein | phrog_2689 | minor tail protein | tail | 1 | 19228 | 21024 |
| YP_008410959.1 | NC_022071_p84 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54993 | 55559 |
| YP_008410987.1 | NC_022071_p112 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 65741 | 66091 |
| YP_008410945.1 | NC_022071_p70 | DnaC helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47655 | 48920 |
| YP_008410933.1 | NC_022071_p58 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 42846 | 43163 |
| YP_008410967.1 | NC_022071_p92 | hypothetical protein | phrog_7890 | unknown function | unknown function | 1 | 58802 | 58912 |
| YP_008411003.1 | NC_022071_p128 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 71943 | 72797 |
| YP_008410975.1 | NC_022071_p100 | hypothetical protein | phrog_6821 | unknown function | unknown function | 1 | 61654 | 61842 |
| YP_008411005.1 | NC_022071_p130 | hypothetical protein | phrog_12614 | unknown function | unknown function | -1 | 74618 | 74743 |
| YP_008410925.1 | NC_022071_p50 | hypothetical protein | phrog_7316 | unknown function | unknown function | 1 | 38151 | 38396 |
| YP_008411000.1 | NC_022071_p125 | hypothetical protein | phrog_8547 | unknown function | unknown function | -1 | 70354 | 70488 |
| YP_008410969.1 | NC_022071_p94 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 59141 | 59479 |
| YP_008410965.1 | NC_022071_p90 | ClpP | phrog_94 | head maturation protease | head and packaging | 1 | 57736 | 58407 |
| YP_008410983.1 | NC_022071_p108 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 63279 | 63491 |
| YP_008410932.1 | NC_022071_p57 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42521 | 42856 |
| YP_008410881.1 | NC_022071_p6 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 4311 | 5369 |
| YP_008410893.1 | NC_022071_p18 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 16989 | 18722 |
| YP_008410938.1 | NC_022071_p63 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44802 | 45557 |
| YP_008410880.1 | NC_022071_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2638 | 4293 |
| YP_008411006.1 | NC_022071_p131 | hypothetical protein | phrog_14714 | unknown function | unknown function | -1 | 74748 | 74903 |
| YP_008410940.1 | NC_022071_p65 | hypothetical protein | phrog_7527 | unknown function | unknown function | 1 | 45754 | 46038 |
| YP_008410981.1 | NC_022071_p106 | hypothetical protein | phrog_37290 | unknown function | unknown function | 1 | 62798 | 62998 |
| YP_008410929.1 | NC_022071_p54 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 40235 | 40474 |
| YP_008410962.1 | NC_022071_p87 | hypothetical protein | phrog_14246 | unknown function | unknown function | 1 | 56201 | 56281 |
| YP_008410912.1 | NC_022071_p37 | hypothetical protein | phrog_10128 | unknown function | unknown function | -1 | 30753 | 31121 |
| YP_008410918.1 | NC_022071_p43 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 34908 | 35270 |
| YP_008410935.1 | NC_022071_p60 | hypothetical protein | phrog_7425 | unknown function | unknown function | 1 | 43329 | 43532 |
| YP_008410899.1 | NC_022071_p24 | hypothetical protein | phrog_9784 | minor tail protein | tail | 1 | 21937 | 24225 |
| YP_008410902.1 | NC_022071_p27 | LysA | phrog_1512 | endolysin | lysis | 1 | 25353 | 26303 |
| YP_008410943.1 | NC_022071_p68 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 46802 | 46981 |
| YP_008410995.1 | NC_022071_p120 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 68249 | 69100 |
| YP_008410927.1 | NC_022071_p52 | hypothetical protein | phrog_200 | lipoprotein | other | 1 | 38649 | 39641 |
| YP_008410892.1 | NC_022071_p17 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 16074 | 16988 |
| YP_008410888.1 | NC_022071_p13 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 9002 | 9901 |
| YP_008410897.1 | NC_022071_p22 | hypothetical protein | phrog_4137 | unknown function | unknown function | 1 | 21190 | 21465 |
| YP_008410990.1 | NC_022071_p115 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 66801 | 67517 |
| YP_008410908.1 | NC_022071_p33 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 28758 | 29102 |
| YP_008411002.1 | NC_022071_p127 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 70753 | 71235 |
| YP_008410894.1 | NC_022071_p19 | hypothetical protein | phrog_4413 | minor tail protein | tail | 1 | 18747 | 19244 |
| YP_008410876.1 | NC_022071_p1 | hypothetical protein | phrog_7082 | unknown function | unknown function | 1 | 91 | 468 |
| YP_008410952.1 | NC_022071_p77 | hypothetical protein | phrog_14542 | unknown function | unknown function | 1 | 52936 | 53067 |
| YP_008410878.1 | NC_022071_p3 | hypothetical protein | phrog_6976 | unknown function | unknown function | 1 | 866 | 1069 |
| YP_008410879.1 | NC_022071_p4 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1069 | 2637 |
| YP_008410923.1 | NC_022071_p48 | hypothetical protein | phrog_9705 | unknown function | unknown function | 1 | 37621 | 37956 |
| YP_008410942.1 | NC_022071_p67 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46441 | 46839 |
| YP_008410905.1 | NC_022071_p30 | hypothetical protein | phrog_5807 | unknown function | unknown function | 1 | 27752 | 28006 |
| YP_008410937.1 | NC_022071_p62 | hypothetical protein | phrog_1123 | unknown function | unknown function | 1 | 44487 | 44801 |
| YP_008410886.1 | NC_022071_p11 | hypothetical protein | phrog_5775 | head-tail connector protein | connector | 1 | 8030 | 8461 |
| YP_008410999.1 | NC_022071_p124 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 70087 | 70350 |
| YP_008410970.1 | NC_022071_p95 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59527 | 59940 |
| YP_008410922.1 | NC_022071_p47 | hypothetical protein | phrog_1649 | metallo-phosphoesterase | other | 1 | 36606 | 37640 |
| YP_008410926.1 | NC_022071_p51 | hypothetical protein | phrog_9674 | unknown function | unknown function | 1 | 38433 | 38561 |
| YP_008410898.1 | NC_022071_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21550 | 21936 |
| YP_008410976.1 | NC_022071_p101 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 61823 | 61993 |
| YP_008410916.1 | NC_022071_p41 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34469 | 34699 |
| YP_008410883.1 | NC_022071_p8 | Capsid | phrog_283 | major head protein | head and packaging | 1 | 6070 | 7218 |
| YP_008410934.1 | NC_022071_p59 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 43160 | 43336 |
| YP_008410914.1 | NC_022071_p39 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32961 | 33740 |
| YP_008411007.1 | NC_022071_p132 | hypothetical protein | phrog_7398 | unknown function | unknown function | -1 | 74903 | 75286 |
| YP_008410980.1 | NC_022071_p105 | hypothetical protein | phrog_32654 | unknown function | unknown function | 1 | 62692 | 62826 |
| YP_008410896.1 | NC_022071_p21 | hypothetical protein | phrog_9672 | minor tail protein | tail | 1 | 21030 | 21200 |
| YP_008410924.1 | NC_022071_p49 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 37943 | 38260 |
| YP_008410954.1 | NC_022071_p79 | hypothetical protein | phrog_6064 | unknown function | unknown function | 1 | 53290 | 53475 |
| YP_008410968.1 | NC_022071_p93 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 58909 | 59148 |
| YP_008410906.1 | NC_022071_p31 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 28009 | 28431 |
| YP_008410941.1 | NC_022071_p66 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46035 | 46394 |
| YP_008410939.1 | NC_022071_p64 | hypothetical protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45557 | 45757 |
| YP_008410973.1 | NC_022071_p98 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60692 | 61474 |
| YP_008410909.1 | NC_022071_p34 | hypothetical protein | phrog_9776 | unknown function | unknown function | -1 | 29108 | 29395 |
| YP_008410985.1 | NC_022071_p110 | hypothetical protein | phrog_4234 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 63942 | 64328 |
| YP_008410928.1 | NC_022071_p53 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 39815 | 40234 |
| YP_008410956.1 | NC_022071_p81 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 54053 | 54289 |
| YP_008410997.1 | NC_022071_p122 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 69607 | 69840 |
| YP_008410972.1 | NC_022071_p97 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 60279 | 60695 |
| YP_008410992.1 | NC_022071_p117 | hypothetical protein | phrog_15796 | unknown function | unknown function | -1 | 67733 | 67891 |
| YP_008410901.1 | NC_022071_p26 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 24407 | 25348 |
| YP_008411008.1 | NC_022071_p133 | hypothetical protein | phrog_15448 | unknown function | unknown function | -1 | 75380 | 75505 |
| YP_008410903.1 | NC_022071_p28 | LysB | phrog_102 | endolysin | lysis | 1 | 26303 | 27274 |
| YP_008410955.1 | NC_022071_p80 | RusA | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53632 | 54045 |
| YP_008410977.1 | NC_022071_p102 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61956 | 62378 |
| YP_008410947.1 | NC_022071_p72 | hypothetical protein | phrog_6624 | unknown function | unknown function | 1 | 49270 | 49458 |
| YP_008410921.1 | NC_022071_p46 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 36248 | 36613 |
| YP_008410966.1 | NC_022071_p91 | hypothetical protein | phrog_7495 | unknown function | unknown function | 1 | 58407 | 58802 |
| YP_008410979.1 | NC_022071_p104 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 62589 | 62708 |
| YP_008410974.1 | NC_022071_p99 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 61475 | 61657 |
| YP_008410904.1 | NC_022071_p29 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 27282 | 27752 |
| YP_008410890.1 | NC_022071_p15 | tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 9991 | 10290 |
| YP_008410931.1 | NC_022071_p56 | hypothetical protein | phrog_4670 | unknown function | unknown function | 1 | 42397 | 42528 |
| YP_008410891.1 | NC_022071_p16 | tape measure protein | phrog_3547 | tail length tape measure protein | tail | 1 | 10856 | 15985 |
| YP_008410993.1 | NC_022071_p118 | hypothetical protein | phrog_6739 | unknown function | unknown function | -1 | 67884 | 67982 |
| YP_008410991.1 | NC_022071_p116 | hypothetical protein | phrog_18991 | unknown function | unknown function | -1 | 67514 | 67702 |
| YP_008410885.1 | NC_022071_p10 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 7692 | 8030 |
| YP_008410911.1 | NC_022071_p36 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 30215 | 30676 |
| YP_008410964.1 | NC_022071_p89 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 57560 | 57739 |
| YP_008411001.1 | NC_022071_p126 | hypothetical protein | phrog_6968 | unknown function | unknown function | -1 | 70490 | 70705 |
| YP_008410920.1 | NC_022071_p45 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35358 | 35774 |
| YP_008410950.1 | NC_022071_p75 | NAPRTase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 50439 | 51923 |
| YP_008410961.1 | NC_022071_p86 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 55995 | 56213 |
| YP_008410946.1 | NC_022071_p71 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 48917 | 49171 |
| YP_008410982.1 | NC_022071_p107 | hypothetical protein | phrog_6800 | unknown function | unknown function | 1 | 62982 | 63164 |
| YP_008410963.1 | NC_022071_p88 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 56278 | 57576 |
| YP_008410910.1 | NC_022071_p35 | NrdC-like protein | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 29380 | 30126 |
| YP_008410948.1 | NC_022071_p73 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 49448 | 49594 |
| YP_008410884.1 | NC_022071_p9 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7231 | 7695 |
| YP_008410971.1 | NC_022071_p96 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 60044 | 60304 |
| YP_008410882.1 | NC_022071_p7 | scaffolding protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5422 | 6027 |
| YP_008410951.1 | NC_022071_p76 | PNK protein | phrog_505 | polynucleotide kinase | other | 1 | 52010 | 52936 |
| YP_008410986.1 | NC_022071_p111 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 65043 | 65732 |
| YP_008410960.1 | NC_022071_p85 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 55546 | 55932 |
| YP_008410953.1 | NC_022071_p78 | hypothetical protein | phrog_7155 | unknown function | unknown function | 1 | 53051 | 53293 |
| YP_008410889.1 | NC_022071_p14 | tail assembly chaperone | phrog_2624 | tail assembly chaperone | tail | 1 | 9991 | 10814 |
| YP_008410900.1 | NC_022071_p25 | hypothetical protein | phrog_9833 | unknown function | unknown function | 1 | 24257 | 24406 |
| YP_008410988.1 | NC_022071_p113 | hypothetical protein | phrog_10010 | unknown function | unknown function | -1 | 66135 | 66290 |
| YP_008410887.1 | NC_022071_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8477 | 8974 |
| YP_008410919.1 | NC_022071_p44 | hypothetical protein | phrog_8707 | unknown function | unknown function | 1 | 35251 | 35361 |
| YP_008410936.1 | NC_022071_p61 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43574 | 44506 |
| YP_008411004.1 | NC_022071_p129 | AAA ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 73007 | 74248 |
| YP_008410915.1 | NC_022071_p40 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33893 | 34282 |
| YP_008410944.1 | NC_022071_p69 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 46978 | 47658 |
| YP_008410989.1 | NC_022071_p114 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 66508 | 66699 |
| YP_008410907.1 | NC_022071_p32 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 28422 | 28688 |
| YP_008410994.1 | NC_022071_p119 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 67975 | 68238 |
| YP_008410984.1 | NC_022071_p109 | hypothetical protein | phrog_10206 | unknown function | unknown function | 1 | 63473 | 63643 |
| YP_008410996.1 | NC_022071_p121 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 69199 | 69594 |
| YP_008410978.1 | NC_022071_p103 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 62378 | 62596 |
| YP_008410917.1 | NC_022071_p42 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34696 | 34911 |
| YP_008410930.1 | NC_022071_p55 | Von Willebrand-like domain protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 40590 | 42020 |
| YP_008410998.1 | NC_022071_p123 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69806 | 69955 |
| YP_008410949.1 | NC_022071_p74 | phosphoribosyl-pyrophosphate synthetase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 49579 | 50442 |