Genomic map of Mycobacterium phage Goku (NC_022085)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022085
Definition
Myobacteriophage Goku, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus.
DB of origin
REFSEQ
Length
76483
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
143
%GC
62.82
Number of singletons
1
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008430643.1 NC_022085_p127 hypothetical protein phrog_3034 unknown function unknown function -1 70523 70891
YP_008430537.1 NC_022085_p21 tail assembly chaperone phrog_15493 tail assembly chaperone tail 1 12582 13043
YP_008430618.1 NC_022085_p102 hypothetical protein phrog_2785 unknown function unknown function 1 61324 61680
YP_008430586.1 NC_022085_p70 hypothetical protein phrog_1389 unknown function unknown function 1 46627 46998
YP_008430646.1 NC_022085_p130 hypothetical protein phrog_1587 unknown function unknown function -1 71831 72178
YP_008430614.1 NC_022085_p98 DNA methylase phrog_67 DNA methyltransferase other 1 58676 59800
YP_008430575.1 NC_022085_p59 hypothetical protein phrog_4633 unknown function unknown function 1 42151 42339
YP_008430653.1 NC_022085_p137 hypothetical protein phrog_1438 unknown function unknown function -1 74138 74311
YP_008430529.1 NC_022085_p13 capsid protein phrog_10 major head protein head and packaging 1 7631 9127
YP_008430562.1 NC_022085_p46 hypothetical protein phrog_2702 unknown function unknown function -1 35969 36184
YP_008430588.1 NC_022085_p72 hypothetical protein phrog_1622 unknown function unknown function 1 47369 47542
YP_008430640.1 NC_022085_p124 HTH binding domain protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 69477 69740
YP_008430638.1 NC_022085_p122 hypothetical protein phrog_2925 unknown function unknown function 1 68643 68822
YP_008430554.1 NC_022085_p38 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 33376 33624
YP_008430558.1 NC_022085_p42 hypothetical protein phrog_722 unknown function unknown function -1 35014 35289
YP_008430596.1 NC_022085_p80 hypothetical protein phrog_1091 unknown function unknown function 1 50956 51159
YP_008430601.1 NC_022085_p85 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 52400 52762
YP_008430656.1 NC_022085_p140 hypothetical protein phrog_2904 unknown function unknown function 1 74980 75327
YP_008430545.1 NC_022085_p29 hypothetical protein phrog_644 unknown function unknown function 1 28262 28690
YP_008430621.1 NC_022085_p105 hypothetical protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 62340 62630
YP_008430629.1 NC_022085_p113 RecA phrog_97 UvsX-like recombinase other 1 66058 67020
YP_008430617.1 NC_022085_p101 hypothetical protein phrog_1454 unknown function unknown function 1 61130 61327
YP_008430534.1 NC_022085_p18 hypothetical protein phrog_813 head-tail adaptor connector 1 10656 11060
YP_008430581.1 NC_022085_p65 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 43766 44734
YP_008430637.1 NC_022085_p121 hypothetical protein phrog_2296 unknown function unknown function 1 68521 68646
YP_008430566.1 NC_022085_p50 integrase phrog_1 integrase integration and excision 1 37583 38464
YP_008430540.1 NC_022085_p24 minor tail protein phrog_110 minor tail protein tail 1 19460 21139
YP_008430585.1 NC_022085_p69 hypothetical protein phrog_2771 unknown function unknown function 1 46160 46630
YP_008430519.1 NC_022085_p3 hypothetical protein phrog_2775 unknown function unknown function 1 446 631
YP_008430616.1 NC_022085_p100 Clp protease phrog_94 head maturation protease head and packaging 1 60322 61128
YP_008430536.1 NC_022085_p20 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 12178 12639
YP_008430542.1 NC_022085_p26 minor tail protein phrog_346 minor tail protein tail 1 21998 24394
YP_008430583.1 NC_022085_p67 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 45134 45856
YP_008430539.1 NC_022085_p23 minor tail protein phrog_106 minor tail protein tail 1 17811 19472
YP_008430553.1 NC_022085_p37 HNH domain protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism -1 32837 33337
YP_008430547.1 NC_022085_p31 hypothetical protein phrog_411 unknown function unknown function 1 28995 29279
YP_008430647.1 NC_022085_p131 hypothetical protein phrog_4547 unknown function unknown function -1 72162 72479
YP_008430579.1 NC_022085_p63 hypothetical protein phrog_2221 unknown function unknown function 1 43058 43219
YP_008430606.1 NC_022085_p90 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 54613 55938
YP_008430642.1 NC_022085_p126 hypothetical protein phrog_2942 unknown function unknown function -1 70245 70526
YP_008430569.1 NC_022085_p53 hypothetical protein phrog_2745 transcriptional repressor transcription regulation -1 39688 40128
YP_008430572.1 NC_022085_p56 pentapeptide repeat protein phrog_923 unknown function unknown function 1 40574 41419
YP_008430654.1 NC_022085_p138 hypothetical protein phrog_2772 unknown function unknown function -1 74308 74553
YP_008430659.1 NC_022085_p143 hypothetical protein phrog_8627 unknown function unknown function 1 75957 76370
YP_008430641.1 NC_022085_p125 hypothetical protein phrog_2579 ParB C-terminal domain DNA, RNA and nucleotide metabolism -1 69737 70090
YP_008430605.1 NC_022085_p89 hypothetical protein phrog_2844 unknown function unknown function 1 54494 54616
YP_008430580.1 NC_022085_p64 hypothetical protein phrog_762 unknown function unknown function 1 43368 43769
YP_008430531.1 NC_022085_p15 hypothetical protein phrog_442 head-tail adaptor connector 1 9385 9951
YP_008430587.1 NC_022085_p71 hypothetical protein phrog_572 unknown function unknown function 1 46995 47369
YP_008430609.1 NC_022085_p93 hypothetical protein phrog_2853 unknown function unknown function 1 57070 57228
YP_008430564.1 NC_022085_p48 hypothetical protein phrog_2759 unknown function unknown function -1 36349 36744
YP_008430589.1 NC_022085_p73 hypothetical protein phrog_2793 unknown function unknown function 1 47545 47778
YP_008430591.1 NC_022085_p75 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48185 48502
YP_008430604.1 NC_022085_p88 hypothetical protein phrog_2495 unknown function unknown function 1 54153 54521
YP_008430632.1 NC_022085_p116 hypothetical protein phrog_2279 unknown function unknown function 1 67307 67519
YP_008430658.1 NC_022085_p142 hypothetical protein phrog_2762 unknown function unknown function 1 75718 75912
YP_008430597.1 NC_022085_p81 HNH domain protein phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 51146 51592
YP_008430517.1 NC_022085_p1 hypothetical protein phrog_3456 unknown function unknown function 1 10 270
YP_008430524.1 NC_022085_p8 hypothetical protein singleton unknown function unknown function -1 1686 1961
YP_008430593.1 NC_022085_p77 hypothetical protein phrog_1882 unknown function unknown function 1 48725 49375
YP_008430538.1 NC_022085_p22 tape meaure protein phrog_2723 tail length tape measure protein tail 1 13048 17781
YP_008430549.1 NC_022085_p33 holin phrog_526 holin lysis 1 30859 31242
YP_008430610.1 NC_022085_p94 hypothetical protein phrog_889 unknown function unknown function 1 57225 57677
YP_008430528.1 NC_022085_p12 hypothetical protein phrog_2753 head maturation protease head and packaging 1 6449 7543
YP_008430619.1 NC_022085_p103 hypothetical protein phrog_2757 unknown function unknown function 1 61681 61971
YP_008430576.1 NC_022085_p60 hypothetical protein phrog_2744 unknown function unknown function 1 42386 42691
YP_008430518.1 NC_022085_p2 hypothetical protein phrog_2829 unknown function unknown function 1 267 449
YP_008430521.1 NC_022085_p5 hypothetical protein phrog_8426 unknown function unknown function 1 878 1006
YP_008430574.1 NC_022085_p58 hypothetical protein phrog_2800 unknown function unknown function 1 41564 41842
YP_008430533.1 NC_022085_p17 hypothetical protein phrog_2805 minor tail protein tail 1 10298 10678
YP_008430652.1 NC_022085_p136 hypothetical protein phrog_4496 unknown function unknown function -1 73780 74133
YP_008430598.1 NC_022085_p82 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 51589 51849
YP_008430544.1 NC_022085_p28 hypothetical protein phrog_553 minor tail protein tail 1 27238 28182
YP_008430550.1 NC_022085_p34 hypothetical protein phrog_2424 unknown function unknown function 1 31235 31573
YP_008430624.1 NC_022085_p108 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 63579 64079
YP_008430559.1 NC_022085_p43 hypothetical protein phrog_2591 unknown function unknown function -1 35286 35471
YP_008430622.1 NC_022085_p106 hypothetical protein phrog_2846 unknown function unknown function 1 63084 63308
YP_008430541.1 NC_022085_p25 minor tail protein phrog_732 minor tail protein tail 1 21148 21981
YP_008430567.1 NC_022085_p51 hypothetical protein phrog_2842 unknown function unknown function 1 38603 38842
YP_008430636.1 NC_022085_p120 hypothetical protein phrog_2823 unknown function unknown function 1 68312 68512
YP_008430628.1 NC_022085_p112 hypothetical protein phrog_1941 unknown function unknown function 1 65808 66050
YP_008430568.1 NC_022085_p52 hypothetical protein phrog_950 unknown function unknown function -1 38820 39593
YP_008430603.1 NC_022085_p87 Pnk protein phrog_505 polynucleotide kinase other 1 53108 54046
YP_008430548.1 NC_022085_p32 LysA phrog_317 endolysin lysis 1 29353 30855
YP_008430546.1 NC_022085_p30 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 28687 28863
YP_008430526.1 NC_022085_p10 hypothetical protein phrog_2845 unknown function unknown function 1 4682 4903
YP_008430657.1 NC_022085_p141 hypothetical protein phrog_8080 unknown function unknown function -1 75371 75583
YP_008430630.1 NC_022085_p114 hypothetical protein phrog_2965 unknown function unknown function 1 67017 67154
YP_008430613.1 NC_022085_p97 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 58173 58679
YP_008430530.1 NC_022085_p14 hypothetical protein phrog_2796 head-tail connector protein connector 1 9194 9385
YP_008430611.1 NC_022085_p95 hypothetical protein phrog_7833 unknown function unknown function 1 57681 57803
YP_008430532.1 NC_022085_p16 hypothetical protein phrog_1531 head closure connector 1 9966 10301
YP_008430565.1 NC_022085_p49 hypothetical protein phrog_2847 unknown function unknown function -1 37030 37332
YP_008430625.1 NC_022085_p109 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 64093 64425
YP_008430644.1 NC_022085_p128 hypothetical protein phrog_1915 unknown function unknown function -1 70888 71448
YP_008430592.1 NC_022085_p76 hypothetical protein phrog_1673 unknown function unknown function 1 48492 48728
YP_008430578.1 NC_022085_p62 hypothetical protein phrog_2147 unknown function unknown function 1 42825 43058
YP_008430555.1 NC_022085_p39 Lsr2 phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 33804 34190
YP_008430571.1 NC_022085_p55 hypothetical protein phrog_2852 unknown function unknown function 1 40440 40577
YP_008430649.1 NC_022085_p133 hypothetical protein phrog_2287 unknown function unknown function -1 72600 72836
YP_008430573.1 NC_022085_p57 hypothetical protein phrog_2463 unknown function unknown function 1 41421 41567
YP_008430639.1 NC_022085_p123 hypothetical protein phrog_2897 unknown function unknown function 1 68822 68953
YP_008430535.1 NC_022085_p19 major tail protein phrog_476 major tail protein tail 1 11087 12058
YP_008430634.1 NC_022085_p118 hypothetical protein phrog_2174 unknown function unknown function 1 67703 68164
YP_008430556.1 NC_022085_p40 hypothetical protein phrog_647 unknown function unknown function -1 34224 34694
YP_008430607.1 NC_022085_p91 hypothetical protein phrog_1590 unknown function unknown function 1 55975 56796
YP_008430543.1 NC_022085_p27 D-Ala-D-Ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 24391 27237
YP_008430560.1 NC_022085_p44 hypothetical protein phrog_1546 unknown function unknown function -1 35464 35820
YP_008430570.1 NC_022085_p54 hypothetical protein phrog_3071 unknown function unknown function 1 40345 40443
YP_008430584.1 NC_022085_p68 hypothetical protein phrog_2750 unknown function unknown function 1 45849 46160
YP_008430631.1 NC_022085_p115 hypothetical protein phrog_2755 unknown function unknown function 1 67141 67314
YP_008430600.1 NC_022085_p84 hypothetical protein phrog_3836 unknown function unknown function 1 52038 52403
YP_008430577.1 NC_022085_p61 hypothetical protein phrog_3463 unknown function unknown function 1 42710 42817
YP_008430563.1 NC_022085_p47 hypothetical protein phrog_2815 unknown function unknown function -1 36203 36349
YP_008430523.1 NC_022085_p7 hypothetical protein phrog_2437 unknown function unknown function -1 1540 1686
YP_008430525.1 NC_022085_p9 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2007 4670
YP_008430645.1 NC_022085_p129 hypothetical protein phrog_9837 unknown function unknown function -1 71453 71815
YP_008430623.1 NC_022085_p107 hypothetical protein phrog_1042 unknown function unknown function 1 63305 63568
YP_008430633.1 NC_022085_p117 hypothetical protein phrog_3062 unknown function unknown function 1 67500 67754
YP_008430650.1 NC_022085_p134 hypothetical protein phrog_2883 unknown function unknown function -1 72852 73388
YP_008430522.1 NC_022085_p6 terminase small subunit phrog_83 terminase small subunit head and packaging 1 999 1460
YP_008430599.1 NC_022085_p83 hypothetical protein phrog_2747 unknown function unknown function 1 51824 52045
YP_008430594.1 NC_022085_p78 hypothetical protein phrog_572 unknown function unknown function 1 49357 49704
YP_008430627.1 NC_022085_p111 DnaQ-like protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 65026 65811
YP_008430615.1 NC_022085_p99 ssDNA binding domain protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 59793 60233
YP_008430595.1 NC_022085_p79 DnaB-like helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 49697 50959
YP_008430557.1 NC_022085_p41 hypothetical protein phrog_1941 unknown function unknown function -1 34691 35002
YP_008430655.1 NC_022085_p139 hypothetical protein phrog_2795 unknown function unknown function -1 74550 74747
YP_008430551.1 NC_022085_p35 LysB phrog_102 endolysin lysis 1 31570 32427
YP_008430602.1 NC_022085_p86 hypothetical protein phrog_2894 unknown function unknown function 1 52759 52953
YP_008430590.1 NC_022085_p74 hypothetical protein phrog_289 GTP-binding domain other 1 47775 48188
YP_008430582.1 NC_022085_p66 hypothetical protein phrog_572 unknown function unknown function 1 44731 45141
YP_008430612.1 NC_022085_p96 hypothetical protein phrog_2788 unknown function unknown function 1 57805 58140
YP_008430527.1 NC_022085_p11 portal protein phrog_12 portal protein head and packaging 1 4890 6446
YP_008430608.1 NC_022085_p92 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 56793 57053
YP_008430552.1 NC_022085_p36 NrdH phrog_726 unknown function unknown function 1 32424 32840
YP_008430626.1 NC_022085_p110 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 64422 65015
YP_008430651.1 NC_022085_p135 hypothetical protein phrog_3174 unknown function unknown function -1 73392 73775
YP_008430635.1 NC_022085_p119 hypothetical protein phrog_2764 unknown function unknown function 1 68161 68328
YP_008430561.1 NC_022085_p45 hypothetical protein phrog_3818 unknown function unknown function -1 35817 35969
YP_008430648.1 NC_022085_p132 hypothetical protein phrog_3730 unknown function unknown function -1 72485 72610
YP_008430520.1 NC_022085_p4 hypothetical protein phrog_3858 unknown function unknown function 1 628 900
YP_008430620.1 NC_022085_p104 hypothetical protein phrog_1969 unknown function unknown function 1 61976 62287