Genomic map of Staphylococcus phage vB_SauM_Remus (NC_022090)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022090
Definition
Staphylococcus phage vB_SauM_Remus, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Silviavirus.
DB of origin
REFSEQ
Length
134643
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
174
%GC
29.97
Number of singletons
2
Number of paralogs
9

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008431214.1 NC_022090_p80 hypothetical protein phrog_1113 unknown function unknown function 1 87286 88140
YP_008431255.1 NC_022090_p121 hypothetical protein phrog_12518 unknown function unknown function 1 106927 107334
YP_008431216.1 NC_022090_p82 structural protein phrog_1104 virion structural protein head and packaging 1 89263 89721
YP_008431283.1 NC_022090_p149 hypothetical protein phrog_2642 unknown function unknown function -1 119964 120587
YP_008431265.1 NC_022090_p131 YpoX protein II phrog_98 unknown function unknown function -1 111248 111601
YP_008431253.1 NC_022090_p119 hypothetical protein phrog_13773 unknown function unknown function 1 105401 105709
YP_008431292.1 NC_022090_p158 transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 125500 125715
YP_008431300.1 NC_022090_p166 hypothetical protein phrog_29176 unknown function unknown function -1 131090 131638
YP_008431192.1 NC_022090_p58 ribonucleotide-diphosphate reductase alpha subunit phrog_12229 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 63931 65664
YP_008431305.1 NC_022090_p171 hypothetical protein phrog_4526 unknown function unknown function -1 133165 133428
YP_008431242.1 NC_022090_p108 hypothetical protein phrog_6981 unknown function unknown function 1 101427 101666
YP_008431179.1 NC_022090_p45 hypothetical protein phrog_11461 unknown function unknown function 1 54725 54982
YP_008431144.1 NC_022090_p10 hypothetical protein phrog_1133 unknown function unknown function 1 12883 13833
YP_008431185.1 NC_022090_p51 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 57558 59492
YP_008431287.1 NC_022090_p153 2,3-cyclic nucleotide 3-phosphodiesterase (putative) phrog_8238 RNA ligase DNA, RNA and nucleotide metabolism -1 122698 124140
YP_008431249.1 NC_022090_p115 hypothetical protein phrog_12588 unknown function unknown function 1 103766 104125
YP_008431217.1 NC_022090_p83 hypothetical protein phrog_1303 DNA binding protein DNA, RNA and nucleotide metabolism 1 89786 90223
YP_008431254.1 NC_022090_p120 hypothetical protein phrog_1709 unknown function unknown function 1 105836 106117
YP_008431187.1 NC_022090_p53 primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 60083 61159
YP_008431296.1 NC_022090_p162 holin phrog_962 holin lysis -1 127741 128241
YP_008431190.1 NC_022090_p56 resolvase phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 61955 62563
YP_008431275.1 NC_022090_p141 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation -1 116093 116233
YP_008431297.1 NC_022090_p163 hypothetical protein phrog_987 unknown function unknown function -1 128322 128597
YP_008431203.1 NC_022090_p69 sigma factor phrog_1025 RNA polymerase sigma factor transcription regulation 1 80573 81232
YP_008431272.1 NC_022090_p138 hypothetical protein phrog_12286 unknown function unknown function -1 114241 114465
YP_008431208.1 NC_022090_p74 hypothetical protein phrog_2721 unknown function unknown function 1 83082 83852
YP_008431165.1 NC_022090_p31 glycerophosphoryl diester phosphodiesterase phrog_2204 glycerophosphoryl diester phosphodiesterase other 1 33222 35678
YP_008431188.1 NC_022090_p54 hypothetical protein phrog_1291 unknown function unknown function 1 61220 61528
YP_008431225.1 NC_022090_p91 hypothetical protein phrog_13794 unknown function unknown function 1 92940 93185
YP_008431161.1 NC_022090_p27 tail tip protein phrog_10341 endolysin lysis 1 28090 28959
YP_008431261.1 NC_022090_p127 hypothetical protein phrog_3549 unknown function unknown function 1 109118 109342
YP_008431258.1 NC_022090_p124 hypothetical protein phrog_15099 unknown function unknown function 1 108291 108446
YP_008431221.1 NC_022090_p87 hypothetical protein phrog_13266 unknown function unknown function 1 91705 91968
YP_008431243.1 NC_022090_p109 hypothetical protein phrog_17940 unknown function unknown function 1 101667 101867
YP_008431139.1 NC_022090_p5 hypothetical protein phrog_3094 unknown function unknown function 1 6671 7504
YP_008431210.1 NC_022090_p76 hypothetical protein phrog_2892 unknown function unknown function 1 85110 85439
YP_008431299.1 NC_022090_p165 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 130777 130992
YP_008431262.1 NC_022090_p128 hypothetical protein phrog_8830 unknown function unknown function 1 109447 109791
YP_008431220.1 NC_022090_p86 hypothetical protein phrog_3157 unknown function unknown function 1 91444 91695
YP_008431252.1 NC_022090_p118 hypothetical protein phrog_21987 unknown function unknown function 1 105189 105398
YP_008431143.1 NC_022090_p9 prohead protease phrog_1028 head maturation protease head and packaging 1 12096 12869
YP_008431148.1 NC_022090_p14 structural protein phrog_1004 virion structural protein head and packaging 1 17014 17889
YP_008431169.1 NC_022090_p35 tail protein phrog_6 baseplate wedge subunit tail 1 37881 38927
YP_008431195.1 NC_022090_p61 hypothetical protein phrog_2797 unknown function unknown function 1 68473 68799
YP_008431226.1 NC_022090_p92 hypothetical protein singleton unknown function unknown function 1 93187 93255
YP_008431237.1 NC_022090_p103 hypothetical protein phrog_13526 unknown function unknown function 1 98083 98394
YP_008431175.1 NC_022090_p41 hypothetical protein phrog_2671 tail fiber protein tail 1 47887 48243
YP_008431281.1 NC_022090_p147 hypothetical protein phrog_2811 virion structural protein head and packaging -1 119539 119802
YP_008431149.1 NC_022090_p15 hypothetical protein phrog_1127 unknown function unknown function 1 17889 18509
YP_008431219.1 NC_022090_p85 hypothetical protein phrog_2863 unknown function unknown function 1 90905 91303
YP_008431307.1 NC_022090_p173 hypothetical protein phrog_1321 unknown function unknown function 1 133936 134217
YP_008431298.1 NC_022090_p164 transposase phrog_506 transposase integration and excision -1 128703 129812
YP_008431270.1 NC_022090_p136 hypothetical protein phrog_2981 unknown function unknown function -1 113251 113811
YP_008431279.1 NC_022090_p145 hypothetical protein phrog_2966 unknown function unknown function -1 117260 117421
YP_008431182.1 NC_022090_p48 adenine-specific methyltransferase phrog_67 DNA methyltransferase other 1 55507 56196
YP_008431212.1 NC_022090_p78 hypothetical protein phrog_984 unknown function unknown function 1 86038 86799
YP_008431150.1 NC_022090_p16 hypothetical protein phrog_1000 unknown function unknown function 1 18528 19364
YP_008431211.1 NC_022090_p77 hypothetical protein phrog_1080 unknown function unknown function 1 85512 86045
YP_008431172.1 NC_022090_p38 tail protein phrog_877 unknown function unknown function 1 42286 45744
YP_008431174.1 NC_022090_p40 structural protein phrog_2665 virion structural protein head and packaging 1 45956 47869
YP_008431160.1 NC_022090_p26 hypothetical protein phrog_37508 unknown function unknown function 1 27798 27941
YP_008431302.1 NC_022090_p168 hypothetical protein phrog_1215 unknown function unknown function -1 132231 132446
YP_008431152.1 NC_022090_p18 major tail sheath protein phrog_279 tail sheath tail 1 19593 21353
YP_008431260.1 NC_022090_p126 hypothetical protein phrog_8830 unknown function unknown function 1 108763 109104
YP_008431213.1 NC_022090_p79 hypothetical protein phrog_2356 unknown function unknown function 1 86780 87286
YP_008431271.1 NC_022090_p137 hypothetical protein phrog_4178 major tail protein tail -1 113828 114151
YP_008431147.1 NC_022090_p13 hypothetical protein phrog_772 tail fiber protein tail 1 15656 16405
YP_008431264.1 NC_022090_p130 hypothetical protein phrog_2884 unknown function unknown function -1 111012 111251
YP_008431235.1 NC_022090_p101 hypothetical protein phrog_467 unknown function unknown function 1 96819 97211
YP_008431189.1 NC_022090_p55 hypothetical protein phrog_1095 unknown function unknown function 1 61528 61965
YP_008431308.1 NC_022090_p174 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 134214 134627
YP_008431159.1 NC_022090_p25 tail lysin phrog_1047 tail associated lysin tail 1 24653 27634
YP_008431266.1 NC_022090_p132 YopX protein I phrog_98 unknown function unknown function -1 111598 111987
YP_008431201.1 NC_022090_p67 intron-encoded endonuclease phrog_4645 endonuclease DNA, RNA and nucleotide metabolism 1 78186 79166
YP_008431154.1 NC_022090_p20 hypothetical protein phrog_2701 unknown function unknown function 1 22544 22681
YP_008431198.1 NC_022090_p64 integration host factor phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 69921 70223
YP_008431155.1 NC_022090_p21 hypothetical protein phrog_1905 unknown function unknown function 1 22718 23167
YP_008431197.1 NC_022090_p63 hypothetical protein phrog_1054 unknown function unknown function 1 69310 69912
YP_008431223.1 NC_022090_p89 hypothetical protein phrog_2988 unknown function unknown function 1 92266 92559
YP_008431230.1 NC_022090_p96 hypothetical protein phrog_3453 unknown function unknown function 1 94485 94691
YP_008431136.1 NC_022090_p2 group I intron protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4022 4942
YP_008431177.1 NC_022090_p43 Rep protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 51707 53293
YP_008431274.1 NC_022090_p140 nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism -1 115630 115992
YP_008431251.1 NC_022090_p117 hypothetical protein phrog_22397 unknown function unknown function 1 104917 105174
YP_008431288.1 NC_022090_p154 hypothetical protein phrog_29421 unknown function unknown function -1 124175 124237
YP_008431282.1 NC_022090_p148 LysM domain-containing protein phrog_1274 lysM motif protein lysis -1 119816 119989
YP_008431199.1 NC_022090_p65 hypothetical protein phrog_1069 unknown function unknown function 1 75857 76339
YP_008431205.1 NC_022090_p71 major tail protein phrog_341 major tail protein tail 1 81990 82502
YP_008431153.1 NC_022090_p19 capsid protein phrog_985 virion structural protein head and packaging 1 21416 21754
YP_008431171.1 NC_022090_p37 structural protein phrog_1394 virion structural protein head and packaging 1 41745 42266
YP_008431263.1 NC_022090_p129 hypothetical protein phrog_17429 unknown function unknown function -1 110431 110997
YP_008431256.1 NC_022090_p122 hypothetical protein phrog_27640 unknown function unknown function -1 107586 107699
YP_008431194.1 NC_022090_p60 HNH endonuclease family protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 67108 67824
YP_008431218.1 NC_022090_p84 hypothetical protein phrog_2726 unknown function unknown function 1 90234 90869
YP_008431163.1 NC_022090_p29 tail lysin phrog_1015 tail protein with lysin activity tail 1 29900 32332
YP_008431181.1 NC_022090_p47 hypothetical protein phrog_9725 unknown function unknown function 1 55259 55507
YP_008431145.1 NC_022090_p11 major capsid protein phrog_752 major head protein head and packaging 1 13918 15309
YP_008431301.1 NC_022090_p167 phage anti-repressor protein phrog_2977 anti-repressor transcription regulation -1 131699 131953
YP_008431196.1 NC_022090_p62 thioredoxin-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 68783 69103
YP_008431240.1 NC_022090_p106 intron-encoded nuclease phrog_467 unknown function unknown function 1 100635 101042
YP_008431259.1 NC_022090_p125 hypothetical protein phrog_10311 unknown function unknown function 1 108448 108681
YP_008431193.1 NC_022090_p59 homing endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 65959 66441
YP_008431168.1 NC_022090_p34 baseplate protein phrog_975 baseplate protein tail 1 37162 37866
YP_008431268.1 NC_022090_p134 hypothetical protein phrog_467 unknown function unknown function -1 112175 112582
YP_008431244.1 NC_022090_p110 hypothetical protein phrog_16557 unknown function unknown function 1 101916 102059
YP_008431142.1 NC_022090_p8 transposase, IS605 OrfB family phrog_506 transposase integration and excision 1 9677 10930
YP_008431162.1 NC_022090_p28 hypothetical protein phrog_8949 unknown function unknown function 1 29018 29848
YP_008431167.1 NC_022090_p33 structural protein phrog_1073 unknown function unknown function 1 36641 37162
YP_008431207.1 NC_022090_p73 hypothetical protein phrog_2673 unknown function unknown function 1 82828 83082
YP_008431215.1 NC_022090_p81 hypothetical protein phrog_1007 unknown function unknown function 1 88514 89245
YP_008431183.1 NC_022090_p49 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 56266 57297
YP_008431290.1 NC_022090_p156 hypothetical protein phrog_2706 unknown function unknown function -1 124667 124855
YP_008431224.1 NC_022090_p90 hypothetical protein phrog_3143 unknown function unknown function 1 92623 92937
YP_008431241.1 NC_022090_p107 hypothetical protein phrog_16365 unknown function unknown function 1 101168 101377
YP_008431236.1 NC_022090_p102 pentapeptide repeat-containing protein phrog_923 unknown function unknown function 1 97211 97942
YP_008431245.1 NC_022090_p111 hypothetical protein phrog_16583 unknown function unknown function 1 102073 102411
YP_008431238.1 NC_022090_p104 hypothetical protein phrog_19178 unknown function unknown function 1 98416 98853
YP_008431306.1 NC_022090_p172 hypothetical protein phrog_3395 membrane protein moron, auxiliary metabolic gene and host takeover 1 133572 133958
YP_008431158.1 NC_022090_p24 hypothetical protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 24141 24599
YP_008431228.1 NC_022090_p94 hypothetical protein phrog_28697 unknown function unknown function 1 93846 93905
YP_008431257.1 NC_022090_p123 hypothetical protein phrog_2601 unknown function unknown function 1 107904 108218
YP_008431157.1 NC_022090_p23 hypothetical protein phrog_1038 tail assembly chaperone tail 1 23621 24049
YP_008431135.1 NC_022090_p1 group I intron protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1213 1875
YP_008431204.1 NC_022090_p70 structural protein phrog_1240 Ig domain containing protein other 1 81336 81968
YP_008431138.1 NC_022090_p4 hypothetical protein phrog_1116 unknown function unknown function 1 6149 6628
YP_008431231.1 NC_022090_p97 pentapeptide repeat-containing protein phrog_923 unknown function unknown function 1 94691 95410
YP_008431277.1 NC_022090_p143 hypothetical protein phrog_2708 nucleotide kinase other -1 116540 116956
YP_008431186.1 NC_022090_p52 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 59476 60069
YP_008431273.1 NC_022090_p139 ArpR DNA-binding protein phrog_14652 DNA binding protein DNA, RNA and nucleotide metabolism -1 114458 115243
YP_008431176.1 NC_022090_p42 hypothetical protein phrog_2691 tail fiber protein tail 1 48249 49613
YP_008431269.1 NC_022090_p135 hypothetical protein phrog_2948 unknown function unknown function -1 112594 113124
YP_008431140.1 NC_022090_p6 hypothetical protein phrog_3937 unknown function unknown function 1 7566 7925
YP_008431246.1 NC_022090_p112 hypothetical protein phrog_18429 unknown function unknown function 1 102546 102884
YP_008431280.1 NC_022090_p146 hypothetical protein phrog_3200 unknown function unknown function -1 117421 119460
YP_008431304.1 NC_022090_p170 hypothetical protein phrog_1481 unknown function unknown function -1 132796 133128
YP_008431146.1 NC_022090_p12 hypothetical protein phrog_1205 unknown function unknown function 1 15413 15646
YP_008431137.1 NC_022090_p3 hypothetical protein phrog_1917 virion structural protein head and packaging 1 5196 5996
YP_008431229.1 NC_022090_p95 hypothetical protein phrog_11752 unknown function unknown function 1 93928 94479
YP_008431276.1 NC_022090_p142 hypothetical protein phrog_2861 unknown function unknown function -1 116230 116553
YP_008431141.1 NC_022090_p7 hypothetical protein phrog_1108 portal protein head and packaging 1 7931 8296
YP_008431303.1 NC_022090_p169 hypothetical protein phrog_937 hemolysin other -1 132457 132789
YP_008431170.1 NC_022090_p36 structural protein phrog_2386 virion structural protein head and packaging 1 38939 41641
YP_008431151.1 NC_022090_p17 hypothetical protein phrog_1151 unknown function unknown function 1 19364 19570
YP_008431164.1 NC_022090_p30 tail lysin phrog_2677 tail protein with lysin activity tail 1 32338 33231
YP_008431209.1 NC_022090_p75 DNA repair exonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 83845 85098
YP_008431227.1 NC_022090_p93 hypothetical protein phrog_13381 unknown function unknown function 1 93320 93817
YP_008431202.1 NC_022090_p68 hypothetical protein phrog_1089 unknown function unknown function 1 80233 80586
YP_008431289.1 NC_022090_p155 ribonuclease HI phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 124249 124674
YP_008431222.1 NC_022090_p88 hypothetical protein phrog_3128 unknown function unknown function 1 91969 92253
YP_008431232.1 NC_022090_p98 hypothetical protein phrog_13842 unknown function unknown function 1 95397 95654
YP_008431248.1 NC_022090_p114 hypothetical protein singleton unknown function unknown function 1 103510 103740
YP_008431247.1 NC_022090_p113 hypothetical protein phrog_9163 unknown function unknown function 1 102884 103192
YP_008431286.1 NC_022090_p152 HNH endonuclease protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 121962 122681
YP_008431184.1 NC_022090_p50 hypothetical protein phrog_2773 unknown function unknown function 1 57299 57565
YP_008431250.1 NC_022090_p116 hypothetical protein phrog_24081 unknown function unknown function 1 104145 104882
YP_008431166.1 NC_022090_p32 structural protein phrog_1011 virion structural protein head and packaging 1 35790 36641
YP_008431156.1 NC_022090_p22 hypothetical protein phrog_2754 virion structural protein head and packaging 1 23224 23532
YP_008431278.1 NC_022090_p144 hypothetical protein phrog_3048 unknown function unknown function -1 117075 117260
YP_008431239.1 NC_022090_p105 hypothetical protein phrog_9084 homing endonuclease DNA, RNA and nucleotide metabolism 1 98904 99449
YP_008431234.1 NC_022090_p100 hypothetical protein phrog_36388 unknown function unknown function 1 96561 96797
YP_008431267.1 NC_022090_p133 hypothetical protein phrog_2532 unknown function unknown function -1 111984 112178
YP_008431173.1 NC_022090_p39 hypothetical protein phrog_1074 unknown function unknown function 1 45796 45966
YP_008431284.1 NC_022090_p150 HNH endonuclease domain protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 120580 121305
YP_008431291.1 NC_022090_p157 hypothetical protein phrog_2896 unknown function unknown function -1 124869 125507
YP_008431285.1 NC_022090_p151 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 121340 121930
YP_008431295.1 NC_022090_p161 N-acetylmuramoyl-L-alanine amidase phrog_833 endolysin lysis -1 126824 127741
YP_008431178.1 NC_022090_p44 helicase/primase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 53286 54725
YP_008431294.1 NC_022090_p160 amidase phrog_12367 endolysin lysis -1 126052 126810
YP_008431206.1 NC_022090_p72 structural protein phrog_1696 major tail protein tail 1 82519 82731
YP_008431200.1 NC_022090_p66 hypothetical protein phrog_2672 unknown function unknown function 1 76410 77570
YP_008431191.1 NC_022090_p57 ribonucleotide-diphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 62578 63915
YP_008431180.1 NC_022090_p46 DNA methylase phrog_8769 methyltransferase other 1 55132 55290
YP_008431233.1 NC_022090_p99 hypothetical protein phrog_17473 unknown function unknown function 1 95648 96544
YP_008431293.1 NC_022090_p159 hypothetical protein phrog_2770 unknown function unknown function -1 125729 125950