| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022324 |
Definition |
Mycobacterium phage Sarfire, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53701 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
63.81 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008530550.1 | NC_022324_p85 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49744 | 49932 |
| YP_008530482.1 | NC_022324_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13033 | 13482 |
| YP_008530541.1 | NC_022324_p76 | hypothetical protein | phrog_17362 | unknown function | unknown function | -1 | 46860 | 47087 |
| YP_008530561.1 | NC_022324_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52719 | 52874 |
| YP_008530528.1 | NC_022324_p63 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41985 | 42158 |
| YP_008530491.1 | NC_022324_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21039 | 21221 |
| YP_008530552.1 | NC_022324_p87 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 50096 | 50248 |
| YP_008530501.1 | NC_022324_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29220 | 29516 |
| YP_008530536.1 | NC_022324_p71 | hypothetical protein | phrog_8167 | unknown function | unknown function | -1 | 44636 | 44971 |
| YP_008530551.1 | NC_022324_p86 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49932 | 50099 |
| YP_008530563.1 | NC_022324_p98 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 53099 | 53353 |
| YP_008530523.1 | NC_022324_p58 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 39627 | 40256 |
| YP_008530507.1 | NC_022324_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32235 | 32615 |
| YP_008530470.1 | NC_022324_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2102 | 3172 |
| YP_008530486.1 | NC_022324_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14698 | 15546 |
| YP_008530476.1 | NC_022324_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6833 | 8521 |
| YP_008530540.1 | NC_022324_p75 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 46715 | 46867 |
| YP_008530544.1 | NC_022324_p79 | repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47823 | 48509 |
| YP_008530562.1 | NC_022324_p97 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 52906 | 52989 |
| YP_008530518.1 | NC_022324_p53 | hypothetical protein | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38181 | 38723 |
| YP_008530515.1 | NC_022324_p50 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37096 | 37281 |
| YP_008530534.1 | NC_022324_p69 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43231 | 43965 |
| YP_008530475.1 | NC_022324_p10 | LysB | phrog_102 | endolysin | lysis | 1 | 5845 | 6813 |
| YP_008530481.1 | NC_022324_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12515 | 13033 |
| YP_008530519.1 | NC_022324_p54 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38702 | 38851 |
| YP_008530500.1 | NC_022324_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28155 | 29099 |
| YP_008530535.1 | NC_022324_p70 | HNH domain protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 43985 | 44563 |
| YP_008530526.1 | NC_022324_p61 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40898 | 41167 |
| YP_008530490.1 | NC_022324_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18963 | 21020 |
| YP_008530469.1 | NC_022324_p4 | hypothetical protein | phrog_25307 | unknown function | unknown function | 1 | 1833 | 2069 |
| YP_008530504.1 | NC_022324_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31554 | 31724 |
| YP_008530556.1 | NC_022324_p91 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 51220 | 51504 |
| YP_008530505.1 | NC_022324_p40 | hypothetical protein | phrog_30784 | unknown function | unknown function | -1 | 31721 | 31954 |
| YP_008530530.1 | NC_022324_p65 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42280 | 42573 |
| YP_008530545.1 | NC_022324_p80 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48597 | 48896 |
| YP_008530485.1 | NC_022324_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14243 | 14689 |
| YP_008530473.1 | NC_022324_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4165 | 4422 |
| YP_008530478.1 | NC_022324_p13 | Head Assembly Protease | phrog_193 | head maturation protease | head and packaging | 1 | 9957 | 10838 |
| YP_008530527.1 | NC_022324_p62 | DnaB helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41164 | 41985 |
| YP_008530471.1 | NC_022324_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3182 | 3883 |
| YP_008530525.1 | NC_022324_p60 | hypothetical protein | phrog_1546 | unknown function | unknown function | -1 | 40488 | 40901 |
| YP_008530537.1 | NC_022324_p72 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 44987 | 45694 |
| YP_008530514.1 | NC_022324_p49 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36332 | 37099 |
| YP_008530543.1 | NC_022324_p78 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 47386 | 47781 |
| YP_008530499.1 | NC_022324_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27967 | 28158 |
| YP_008530467.1 | NC_022324_p2 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 757 | 1053 |
| YP_008530509.1 | NC_022324_p44 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34475 | 34705 |
| YP_008530557.1 | NC_022324_p92 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 51773 | 51928 |
| YP_008530549.1 | NC_022324_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49517 | 49747 |
| YP_008530484.1 | NC_022324_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13844 | 14239 |
| YP_008530487.1 | NC_022324_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15657 | 16456 |
| YP_008530546.1 | NC_022324_p81 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48893 | 49162 |
| YP_008530532.1 | NC_022324_p67 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42857 | 43048 |
| YP_008530508.1 | NC_022324_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32612 | 34438 |
| YP_008530477.1 | NC_022324_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8518 | 9960 |
| YP_008530531.1 | NC_022324_p66 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42570 | 42860 |
| YP_008530548.1 | NC_022324_p83 | hypothetical protein | phrog_15840 | unknown function | unknown function | -1 | 49359 | 49520 |
| YP_008530466.1 | NC_022324_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 608 | 760 |
| YP_008530496.1 | NC_022324_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24220 | 26073 |
| YP_008530503.1 | NC_022324_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31285 | 31557 |
| YP_008530533.1 | NC_022324_p68 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 43045 | 43203 |
| YP_008530492.1 | NC_022324_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21221 | 23023 |
| YP_008530559.1 | NC_022324_p94 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 52194 | 52388 |
| YP_008530512.1 | NC_022324_p47 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35403 | 36194 |
| YP_008530472.1 | NC_022324_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3897 | 4157 |
| YP_008530480.1 | NC_022324_p15 | Capsid | phrog_10 | major head protein | head and packaging | 1 | 11420 | 12436 |
| YP_008530558.1 | NC_022324_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52085 | 52171 |
| YP_008530483.1 | NC_022324_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13437 | 13844 |
| YP_008530529.1 | NC_022324_p64 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42155 | 42283 |
| YP_008530502.1 | NC_022324_p37 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 29648 | 31210 |
| YP_008530493.1 | NC_022324_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23061 | 23507 |
| YP_008530520.1 | NC_022324_p55 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38928 | 39071 |
| YP_008530516.1 | NC_022324_p51 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37278 | 37844 |
| YP_008530547.1 | NC_022324_p82 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49159 | 49362 |
| YP_008530553.1 | NC_022324_p88 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 50245 | 50394 |
| YP_008530488.1 | NC_022324_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15657 | 16034 |
| YP_008530524.1 | NC_022324_p59 | hypothetical protein | phrog_2740 | unknown function | unknown function | -1 | 40313 | 40495 |
| YP_008530497.1 | NC_022324_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26066 | 27544 |
| YP_008530517.1 | NC_022324_p52 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37841 | 38362 |
| YP_008530506.1 | NC_022324_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31951 | 32238 |
| YP_008530522.1 | NC_022324_p57 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 39544 | 39630 |
| YP_008530510.1 | NC_022324_p45 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34736 | 35227 |
| YP_008530560.1 | NC_022324_p95 | hypothetical protein | phrog_1570 | unknown function | unknown function | -1 | 52385 | 52708 |
| YP_008530521.1 | NC_022324_p56 | Endo VII protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39090 | 39557 |
| YP_008530564.1 | NC_022324_p99 | hypothetical protein | phrog_21178 | unknown function | unknown function | -1 | 53359 | 53634 |
| YP_008530468.1 | NC_022324_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1088 | 1522 |
| YP_008530538.1 | NC_022324_p73 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 46031 | 46492 |
| YP_008530474.1 | NC_022324_p9 | LysA | phrog_317 | endolysin | lysis | 1 | 4422 | 5855 |
| YP_008530498.1 | NC_022324_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27637 | 27957 |
| YP_008530489.1 | NC_022324_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16468 | 18939 |
| YP_008530539.1 | NC_022324_p74 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 46489 | 46722 |
| YP_008530513.1 | NC_022324_p48 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36187 | 36327 |
| YP_008530554.1 | NC_022324_p89 | hypothetical protein | phrog_12384 | unknown function | unknown function | -1 | 50391 | 50660 |
| YP_008530511.1 | NC_022324_p46 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35224 | 35406 |
| YP_008530495.1 | NC_022324_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23758 | 24195 |
| YP_008530494.1 | NC_022324_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23504 | 23851 |
| YP_008530542.1 | NC_022324_p77 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47084 | 47389 |
| YP_008530479.1 | NC_022324_p14 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10897 | 11409 |
| YP_008530555.1 | NC_022324_p90 | hypothetical protein | phrog_18281 | unknown function | unknown function | -1 | 50941 | 51153 |