| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022330 |
Definition |
Mycobacterium phage Quink, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
76586 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
151 |
%GC |
62.99 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008531098.1 | NC_022330_p22 | hypothetical protein | phrog_15493 | tail assembly chaperone | tail | 1 | 12635 | 13102 |
| YP_008531105.1 | NC_022330_p29 | structural protein | phrog_553 | minor tail protein | tail | 1 | 27276 | 28238 |
| YP_008531080.1 | NC_022330_p4 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 739 | 1032 |
| YP_008531195.1 | NC_022330_p119 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67287 | 67499 |
| YP_008531193.1 | NC_022330_p117 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66997 | 67134 |
| YP_008531189.1 | NC_022330_p113 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 64516 | 64995 |
| YP_008531181.1 | NC_022330_p105 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61884 | 62240 |
| YP_008531224.1 | NC_022330_p148 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 75060 | 75419 |
| YP_008531126.1 | NC_022330_p50 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36893 | 37108 |
| YP_008531089.1 | NC_022330_p13 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7106 | 8599 |
| YP_008531077.1 | NC_022330_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
| YP_008531202.1 | NC_022330_p126 | RDF protein | phrog_2897 | unknown function | unknown function | 1 | 68802 | 68933 |
| YP_008531124.1 | NC_022330_p48 | RDF protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36500 | 36667 |
| YP_008531192.1 | NC_022330_p116 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 66038 | 67000 |
| YP_008531203.1 | NC_022330_p127 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68944 | 69078 |
| YP_008531109.1 | NC_022330_p33 | lysin A | phrog_317 | endolysin | lysis | 1 | 29399 | 30901 |
| YP_008531083.1 | NC_022330_p7 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1685 | 1924 |
| YP_008531146.1 | NC_022330_p70 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44987 | 45955 |
| YP_008531097.1 | NC_022330_p21 | hypothetical protein | phrog_621 | tail assembly chaperone | tail | 1 | 12231 | 12692 |
| YP_008531140.1 | NC_022330_p64 | RDF protein | phrog_2744 | unknown function | unknown function | 1 | 43311 | 43616 |
| YP_008531215.1 | NC_022330_p139 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72406 | 72954 |
| YP_008531130.1 | NC_022330_p54 | integrase | phrog_1 | integrase | integration and excision | 1 | 38508 | 39389 |
| YP_008531117.1 | NC_022330_p41 | HNH endonuclease | phrog_647 | unknown function | unknown function | -1 | 33991 | 34599 |
| YP_008531084.1 | NC_022330_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1924 | 2232 |
| YP_008531156.1 | NC_022330_p80 | HNH restriction enzyme | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49406 | 49723 |
| YP_008531199.1 | NC_022330_p123 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68292 | 68492 |
| YP_008531207.1 | NC_022330_p131 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70225 | 70479 |
| YP_008531221.1 | NC_022330_p145 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74334 | 74546 |
| YP_008531191.1 | NC_022330_p115 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65788 | 66030 |
| YP_008531122.1 | NC_022330_p46 | hypothetical protein | phrog_6127 | unknown function | unknown function | -1 | 36262 | 36375 |
| YP_008531208.1 | NC_022330_p132 | hypothetical protein | phrog_8201 | unknown function | unknown function | -1 | 70476 | 70550 |
| YP_008531217.1 | NC_022330_p141 | hypothetical protein | phrog_4496 | unknown function | unknown function | -1 | 73358 | 73711 |
| YP_008531164.1 | NC_022330_p88 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52811 | 53176 |
| YP_008531178.1 | NC_022330_p102 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 59335 | 60558 |
| YP_008531209.1 | NC_022330_p133 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70547 | 70915 |
| YP_008531085.1 | NC_022330_p9 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 2277 | 3947 |
| YP_008531131.1 | NC_022330_p55 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39528 | 39767 |
| YP_008531150.1 | NC_022330_p74 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 47381 | 47851 |
| YP_008531225.1 | NC_022330_p149 | hypothetical protein | phrog_8080 | unknown function | unknown function | -1 | 75466 | 75684 |
| YP_008531213.1 | NC_022330_p137 | HNH endonuclease | phrog_3730 | unknown function | unknown function | -1 | 72039 | 72164 |
| YP_008531163.1 | NC_022330_p87 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52597 | 52818 |
| YP_008531116.1 | NC_022330_p40 | lysyl tRNA synthetase-like protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33557 | 33943 |
| YP_008531134.1 | NC_022330_p58 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41270 | 41368 |
| YP_008531103.1 | NC_022330_p27 | structural protein | phrog_346 | minor tail protein | tail | 1 | 22042 | 24438 |
| YP_008531169.1 | NC_022330_p93 | RDF protein | phrog_2844 | unknown function | unknown function | 1 | 55016 | 55114 |
| YP_008531197.1 | NC_022330_p121 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67683 | 68144 |
| YP_008531175.1 | NC_022330_p99 | RDF protein | phrog_889 | unknown function | unknown function | 1 | 57992 | 58462 |
| YP_008531179.1 | NC_022330_p103 | SSB protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60551 | 60991 |
| YP_008531106.1 | NC_022330_p30 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28308 | 28736 |
| YP_008531176.1 | NC_022330_p100 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58464 | 58799 |
| YP_008531093.1 | NC_022330_p17 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 9814 | 10194 |
| YP_008531104.1 | NC_022330_p28 | structural protein/ betalactamase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24435 | 27275 |
| YP_008531078.1 | NC_022330_p2 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 267 | 560 |
| YP_008531127.1 | NC_022330_p51 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 37127 | 37273 |
| YP_008531082.1 | NC_022330_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1152 | 1613 |
| YP_008531139.1 | NC_022330_p63 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 43076 | 43264 |
| YP_008531158.1 | NC_022330_p82 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49946 | 50596 |
| YP_008531147.1 | NC_022330_p71 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45952 | 46362 |
| YP_008531125.1 | NC_022330_p49 | HNH endonuclease | phrog_2893 | unknown function | unknown function | -1 | 36664 | 36900 |
| YP_008531188.1 | NC_022330_p112 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64139 | 64513 |
| YP_008531148.1 | NC_022330_p72 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46355 | 47077 |
| YP_008531110.1 | NC_022330_p34 | hypothetical protein | phrog_526 | holin | lysis | 1 | 30905 | 31288 |
| YP_008531152.1 | NC_022330_p76 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48216 | 48590 |
| YP_008531210.1 | NC_022330_p134 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70912 | 71370 |
| YP_008531219.1 | NC_022330_p143 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73886 | 74122 |
| YP_008531090.1 | NC_022330_p14 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8722 | 8901 |
| YP_008531145.1 | NC_022330_p69 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44661 | 44990 |
| YP_008531172.1 | NC_022330_p96 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 56742 | 57563 |
| YP_008531200.1 | NC_022330_p124 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68489 | 68626 |
| YP_008531186.1 | NC_022330_p110 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 63572 | 63868 |
| YP_008531222.1 | NC_022330_p146 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 74559 | 74807 |
| YP_008531123.1 | NC_022330_p47 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 36372 | 36500 |
| YP_008531151.1 | NC_022330_p75 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47851 | 48219 |
| YP_008531165.1 | NC_022330_p89 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53173 | 53535 |
| YP_008531155.1 | NC_022330_p79 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48996 | 49409 |
| YP_008531128.1 | NC_022330_p52 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37273 | 37668 |
| YP_008531157.1 | NC_022330_p81 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49713 | 49949 |
| YP_008531170.1 | NC_022330_p94 | hypothetical protein | phrog_10857 | unknown function | unknown function | 1 | 55111 | 55383 |
| YP_008531187.1 | NC_022330_p111 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63865 | 64128 |
| YP_008531198.1 | NC_022330_p122 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68141 | 68308 |
| YP_008531135.1 | NC_022330_p59 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41365 | 41502 |
| YP_008531185.1 | NC_022330_p109 | hypothetical protein | phrog_15491 | unknown function | unknown function | 1 | 63163 | 63279 |
| YP_008531099.1 | NC_022330_p23 | tapemeasure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13095 | 17825 |
| YP_008531160.1 | NC_022330_p84 | DNA B-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50918 | 52180 |
| YP_008531174.1 | NC_022330_p98 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57837 | 57995 |
| YP_008531206.1 | NC_022330_p130 | ParBc domain protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69717 | 70106 |
| YP_008531087.1 | NC_022330_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4167 | 5723 |
| YP_008531177.1 | NC_022330_p101 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58796 | 59338 |
| YP_008531171.1 | NC_022330_p95 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55380 | 56705 |
| YP_008531161.1 | NC_022330_p85 | HNH endonuclease | phrog_1091 | unknown function | unknown function | 1 | 52177 | 52365 |
| YP_008531205.1 | NC_022330_p129 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69457 | 69720 |
| YP_008531101.1 | NC_022330_p25 | structural/ tail protein | phrog_110 | minor tail protein | tail | 1 | 19504 | 21183 |
| YP_008531194.1 | NC_022330_p118 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67121 | 67294 |
| YP_008531129.1 | NC_022330_p53 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37955 | 38257 |
| YP_008531154.1 | NC_022330_p78 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48766 | 48999 |
| YP_008531180.1 | NC_022330_p104 | Clp protein | phrog_94 | head maturation protease | head and packaging | 1 | 61081 | 61887 |
| YP_008531108.1 | NC_022330_p32 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29041 | 29325 |
| YP_008531211.1 | NC_022330_p135 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71385 | 71732 |
| YP_008531092.1 | NC_022330_p16 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9482 | 9817 |
| YP_008531132.1 | NC_022330_p56 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39745 | 40518 |
| YP_008531120.1 | NC_022330_p44 | HNH endonuclease | phrog_1573 | DNA methyltransferase | other | -1 | 35560 | 35997 |
| YP_008531201.1 | NC_022330_p125 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68623 | 68802 |
| YP_008531133.1 | NC_022330_p57 | hypothetical protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40613 | 41053 |
| YP_008531113.1 | NC_022330_p37 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32470 | 32886 |
| YP_008531138.1 | NC_022330_p62 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42489 | 42767 |
| YP_008531218.1 | NC_022330_p142 | HNH endonuclease | phrog_1438 | unknown function | unknown function | -1 | 73716 | 73889 |
| YP_008531182.1 | NC_022330_p106 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62241 | 62531 |
| YP_008531096.1 | NC_022330_p20 | structural protein | phrog_5711 | head fiber protein | head and packaging | 1 | 11637 | 12110 |
| YP_008531212.1 | NC_022330_p136 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 71716 | 72033 |
| YP_008531143.1 | NC_022330_p67 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43982 | 44143 |
| YP_008531119.1 | NC_022330_p43 | HNH endonuclease | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 34976 | 35563 |
| YP_008531088.1 | NC_022330_p12 | hypothetical protein | phrog_2753 | head maturation protease | head and packaging | 1 | 5726 | 7018 |
| YP_008531081.1 | NC_022330_p5 | hypothetical protein | phrog_8426 | unknown function | unknown function | 1 | 1010 | 1159 |
| YP_008531102.1 | NC_022330_p26 | tail protein | phrog_732 | minor tail protein | tail | 1 | 21192 | 22025 |
| YP_008531226.1 | NC_022330_p150 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75793 | 76014 |
| YP_008531214.1 | NC_022330_p138 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72154 | 72390 |
| YP_008531100.1 | NC_022330_p24 | structural protein | phrog_106 | minor tail protein | tail | 1 | 17855 | 19516 |
| YP_008531162.1 | NC_022330_p86 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 52347 | 52622 |
| YP_008531167.1 | NC_022330_p91 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 53881 | 54822 |
| YP_008531141.1 | NC_022330_p65 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43635 | 43742 |
| YP_008531142.1 | NC_022330_p66 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43750 | 44049 |
| YP_008531149.1 | NC_022330_p73 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 47070 | 47381 |
| YP_008531183.1 | NC_022330_p107 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 62536 | 62847 |
| YP_008531118.1 | NC_022330_p42 | HNH endonuclease | phrog_722 | unknown function | unknown function | -1 | 34596 | 34979 |
| YP_008531136.1 | NC_022330_p60 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 41499 | 42344 |
| YP_008531223.1 | NC_022330_p147 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 74804 | 74995 |
| YP_008531184.1 | NC_022330_p108 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62900 | 63190 |
| YP_008531091.1 | NC_022330_p15 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 8901 | 9467 |
| YP_008531111.1 | NC_022330_p35 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31281 | 31619 |
| YP_008531144.1 | NC_022330_p68 | secreted protein | phrog_301 | secreted protein | other | 1 | 44332 | 44664 |
| YP_008531216.1 | NC_022330_p140 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 72958 | 73353 |
| YP_008531204.1 | NC_022330_p128 | hypothetical protein | phrog_6448 | unknown function | unknown function | 1 | 69080 | 69193 |
| YP_008531121.1 | NC_022330_p45 | HNH endonuclease | phrog_722 | unknown function | unknown function | -1 | 35994 | 36269 |
| YP_008531159.1 | NC_022330_p83 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50578 | 50925 |
| YP_008531153.1 | NC_022330_p77 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48590 | 48769 |
| YP_008531107.1 | NC_022330_p31 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28723 | 28908 |
| YP_008531166.1 | NC_022330_p90 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53532 | 53726 |
| YP_008531168.1 | NC_022330_p92 | hypothetical protein | phrog_7164 | unknown function | unknown function | 1 | 54822 | 55019 |
| YP_008531095.1 | NC_022330_p19 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 10603 | 11577 |
| YP_008531086.1 | NC_022330_p10 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 3959 | 4180 |
| YP_008531227.1 | NC_022330_p151 | hypothetical protein | phrog_8627 | unknown function | unknown function | 1 | 76059 | 76472 |
| YP_008531137.1 | NC_022330_p61 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42346 | 42492 |
| YP_008531196.1 | NC_022330_p120 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67480 | 67734 |
| YP_008531220.1 | NC_022330_p144 | hypothetical protein | phrog_7581 | unknown function | unknown function | -1 | 74125 | 74328 |
| YP_008531190.1 | NC_022330_p114 | polymerase II | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 65006 | 65791 |
| YP_008531115.1 | NC_022330_p39 | hypothetical protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 33375 | 33554 |
| YP_008531079.1 | NC_022330_p3 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 557 | 742 |
| YP_008531173.1 | NC_022330_p97 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57560 | 57820 |
| YP_008531094.1 | NC_022330_p18 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10172 | 10576 |
| YP_008531114.1 | NC_022330_p38 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 32893 | 33138 |
| YP_008531112.1 | NC_022330_p36 | lysin B | phrog_102 | endolysin | lysis | 1 | 31616 | 32473 |