| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022751 |
Definition |
Cyanophage PP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
42480 |
Host Name |
Plectonema boryanum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
41 |
%GC |
46.4 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008766996.1 | NC_022751_p38 | hypothetical protein | phrog_37152 | unknown function | unknown function | -1 | 40307 | 40807 |
| YP_008766997.1 | NC_022751_p39 | hypothetical protein | phrog_37501 | unknown function | unknown function | -1 | 40813 | 41298 |
| YP_008766989.1 | NC_022751_p31 | tail tube A | phrog_10775 | tail protein | tail | -1 | 33108 | 33773 |
| YP_008766963.1 | NC_022751_p5 | hypothetical protein | phrog_33146 | unknown function | unknown function | 1 | 1949 | 3202 |
| YP_008766960.1 | NC_022751_p2 | hypothetical protein | phrog_37788 | unknown function | unknown function | 1 | 774 | 1334 |
| YP_008766974.1 | NC_022751_p16 | hypothetical protein | phrog_32411 | unknown function | unknown function | 1 | 11497 | 11742 |
| YP_008766984.1 | NC_022751_p26 | tail protein | phrog_33290 | ParB-like partition nuclease | DNA, RNA and nucleotide metabolism | -1 | 20299 | 25437 |
| YP_008766987.1 | NC_022751_p29 | tail tube B | phrog_21185 | tail protein | tail | -1 | 29665 | 32748 |
| YP_008766961.1 | NC_022751_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1331 | 1567 |
| YP_008766983.1 | NC_022751_p25 | tail fiber | phrog_19395 | tail fiber protein; host specificity | tail | -1 | 16740 | 20201 |
| YP_008766982.1 | NC_022751_p24 | tail fiber | phrog_22682 | tail fiber protein | tail | -1 | 15551 | 16753 |
| YP_008766999.1 | NC_022751_p41 | hypothetical protein | phrog_32491 | unknown function | unknown function | -1 | 41599 | 41850 |
| YP_008766992.1 | NC_022751_p34 | scaffolding protein | phrog_19777 | head scaffolding protein | head and packaging | -1 | 35384 | 36067 |
| YP_008766979.1 | NC_022751_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14038 | 14247 |
| YP_008766971.1 | NC_022751_p13 | hypothetical protein | phrog_37438 | unknown function | unknown function | 1 | 9089 | 9295 |
| YP_008766972.1 | NC_022751_p14 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9299 | 11167 |
| YP_008766988.1 | NC_022751_p30 | recombination endonuclease VII | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 32738 | 33103 |
| YP_008766968.1 | NC_022751_p10 | hypothetical protein | phrog_29046 | unknown function | unknown function | 1 | 5377 | 6636 |
| YP_008766993.1 | NC_022751_p35 | portal protein | phrog_332 | head-tail adaptor | connector | -1 | 36072 | 38027 |
| YP_008766975.1 | NC_022751_p17 | hypothetical protein | phrog_31336 | unknown function | unknown function | 1 | 11826 | 12788 |
| YP_008766995.1 | NC_022751_p37 | terminase | phrog_38 | terminase large subunit | head and packaging | -1 | 38504 | 40201 |
| YP_008766962.1 | NC_022751_p4 | hypothetical protein | phrog_33605 | unknown function | unknown function | 1 | 1545 | 1748 |
| YP_008766978.1 | NC_022751_p20 | ERF family protein | phrog_2324 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 13522 | 14025 |
| YP_008766990.1 | NC_022751_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34050 | 34166 |
| YP_008766998.1 | NC_022751_p40 | hypothetical protein | phrog_29870 | unknown function | unknown function | -1 | 41319 | 41594 |
| YP_008766976.1 | NC_022751_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13017 | 13193 |
| YP_008766994.1 | NC_022751_p36 | DNA endonuclease | phrog_5046 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 38042 | 38467 |
| YP_008766977.1 | NC_022751_p19 | hypothetical protein | phrog_33364 | unknown function | unknown function | 1 | 13272 | 13514 |
| YP_008766966.1 | NC_022751_p8 | hypothetical protein | phrog_37564 | unknown function | unknown function | 1 | 4624 | 5133 |
| YP_008766970.1 | NC_022751_p12 | hypothetical protein | phrog_35193 | unknown function | unknown function | 1 | 8876 | 9076 |
| YP_008766965.1 | NC_022751_p7 | hypothetical protein | phrog_36145 | unknown function | unknown function | 1 | 3956 | 4624 |
| YP_008766986.1 | NC_022751_p28 | internal protein | phrog_35077 | unknown function | unknown function | -1 | 28471 | 29661 |
| YP_008766991.1 | NC_022751_p33 | capsid protein | phrog_267 | major head protein | head and packaging | -1 | 34216 | 35361 |
| YP_008766959.1 | NC_022751_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 419 | 685 |
| YP_008766964.1 | NC_022751_p6 | hypothetical protein | phrog_36294 | unknown function | unknown function | 1 | 3292 | 3837 |
| YP_008766967.1 | NC_022751_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5078 | 5371 |
| YP_008766981.1 | NC_022751_p23 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14627 | 15487 |
| YP_008766969.1 | NC_022751_p11 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 6641 | 8815 |
| YP_008766980.1 | NC_022751_p22 | hypothetical protein | phrog_38676 | unknown function | unknown function | 1 | 14210 | 14548 |
| YP_008766973.1 | NC_022751_p15 | hypothetical protein | phrog_28195 | unknown function | unknown function | 1 | 11149 | 11304 |
| YP_008766985.1 | NC_022751_p27 | endopeptidase | phrog_21656 | peptidase | other | -1 | 25485 | 28469 |