functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_022752 |
Definition |
Salmonella phage SETP13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
42665 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
49.78 |
Number of singletons |
2 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_008767049.1 | NC_022752_p50 | hypothetical protein | phrog_12538 | unknown function | unknown function | 1 | 36379 | 36573 |
YP_008767055.1 | NC_022752_p56 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 38052 | 38255 |
YP_008767013.1 | NC_022752_p14 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 9326 | 9514 |
YP_008767003.1 | NC_022752_p4 | hypothetical protein | phrog_4334 | unknown function | unknown function | -1 | 3328 | 3696 |
YP_008767059.1 | NC_022752_p60 | class I holin | phrog_2508 | holin | lysis | 1 | 39426 | 39716 |
YP_008767066.1 | NC_022752_p67 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 41673 | 42029 |
YP_008767045.1 | NC_022752_p46 | EaA protein | phrog_60 | unknown function | unknown function | -1 | 32706 | 33281 |
YP_008767053.1 | NC_022752_p54 | hypothetical protein | phrog_9384 | unknown function | unknown function | 1 | 37386 | 37574 |
YP_008767012.1 | NC_022752_p13 | major tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 8939 | 9289 |
YP_008767041.1 | NC_022752_p42 | hypothetical protein | phrog_8602 | unknown function | unknown function | -1 | 31305 | 31508 |
YP_008767000.1 | NC_022752_p1 | phage terminase small subunit | phrog_3064 | terminase | head and packaging | 1 | 40 | 549 |
YP_008767056.1 | NC_022752_p57 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 38258 | 38623 |
YP_008767058.1 | NC_022752_p59 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 39143 | 39424 |
YP_008767051.1 | NC_022752_p52 | hypothetical protein | phrog_924 | unknown function | unknown function | 1 | 36861 | 37070 |
YP_008767062.1 | NC_022752_p63 | hypothetical protein | phrog_27442 | unknown function | unknown function | 1 | 40895 | 41089 |
YP_008767050.1 | NC_022752_p51 | hypothetical protein | phrog_625 | unknown function | unknown function | 1 | 36589 | 36864 |
YP_008767047.1 | NC_022752_p48 | hypothetical protein | phrog_5169 | unknown function | unknown function | -1 | 35521 | 35754 |
YP_008767016.1 | NC_022752_p17 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 10635 | 10994 |
YP_008767015.1 | NC_022752_p16 | neck protein | phrog_3614 | unknown function | unknown function | 1 | 10030 | 10635 |
YP_008767001.1 | NC_022752_p2 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 539 | 1810 |
YP_008767068.1 | NC_022752_p69 | hypothetical protein | phrog_10134 | unknown function | unknown function | 1 | 42341 | 42571 |
YP_008767035.1 | NC_022752_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26066 | 26359 |
YP_008767014.1 | NC_022752_p15 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9518 | 10027 |
YP_008767064.1 | NC_022752_p65 | hypothetical protein | phrog_20019 | unknown function | unknown function | 1 | 41277 | 41486 |
YP_008767033.1 | NC_022752_p34 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 24439 | 25779 |
YP_008767063.1 | NC_022752_p64 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 41095 | 41280 |
YP_008767057.1 | NC_022752_p58 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 38629 | 39063 |
YP_008767065.1 | NC_022752_p66 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 41521 | 41676 |
YP_008767027.1 | NC_022752_p28 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 18112 | 18612 |
YP_008767022.1 | NC_022752_p23 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 13460 | 14590 |
YP_008767005.1 | NC_022752_p6 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 4845 | 5303 |
YP_008767011.1 | NC_022752_p12 | head protein | phrog_4366 | head fiber protein | head and packaging | 1 | 8643 | 8927 |
YP_008767067.1 | NC_022752_p68 | hypothetical protein | phrog_31127 | unknown function | unknown function | 1 | 42146 | 42325 |
YP_008767028.1 | NC_022752_p29 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 18609 | 19124 |
YP_008767061.1 | NC_022752_p62 | endolysin | phrog_7 | endolysin | lysis | 1 | 40226 | 40708 |
YP_008767040.1 | NC_022752_p41 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 29878 | 31308 |
YP_008767029.1 | NC_022752_p30 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 19121 | 19486 |
YP_008767043.1 | NC_022752_p44 | hypothetical protein | phrog_34383 | unknown function | unknown function | -1 | 32079 | 32336 |
YP_008767046.1 | NC_022752_p47 | helicase/primase protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 33278 | 35464 |
YP_008767060.1 | NC_022752_p61 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39694 | 40239 |
YP_008767037.1 | NC_022752_p38 | hypothetical protein | phrog_14925 | unknown function | unknown function | -1 | 26671 | 26823 |
YP_008767006.1 | NC_022752_p7 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 5447 | 5872 |
YP_008767009.1 | NC_022752_p10 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6828 | 7529 |
YP_008767026.1 | NC_022752_p27 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 15777 | 18110 |
YP_008767039.1 | NC_022752_p40 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 29170 | 29796 |
YP_008767021.1 | NC_022752_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13230 | 13433 |
YP_008767042.1 | NC_022752_p43 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 31552 | 32079 |
YP_008767020.1 | NC_022752_p21 | hypothetical protein | phrog_2452 | unknown function | unknown function | -1 | 13003 | 13233 |
YP_008767044.1 | NC_022752_p45 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 32470 | 32688 |
YP_008767019.1 | NC_022752_p20 | tail protein | phrog_290 | minor tail protein | tail | 1 | 11805 | 12974 |
YP_008767024.1 | NC_022752_p25 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 15003 | 15419 |
YP_008767023.1 | NC_022752_p24 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | -1 | 14653 | 14832 |
YP_008767017.1 | NC_022752_p18 | tail protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10991 | 11386 |
YP_008767025.1 | NC_022752_p26 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 15425 | 15784 |
YP_008767008.1 | NC_022752_p9 | spanin protein | phrog_5672 | Rz-like spanin | lysis | 1 | 6600 | 6743 |
YP_008767004.1 | NC_022752_p5 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 3799 | 4842 |
YP_008767031.1 | NC_022752_p32 | tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 22048 | 24102 |
YP_008767054.1 | NC_022752_p55 | hypothetical protein | phrog_6094 | unknown function | unknown function | 1 | 37603 | 38055 |
YP_008767032.1 | NC_022752_p33 | hypothetical protein | phrog_13851 | unknown function | unknown function | -1 | 24221 | 24442 |
YP_008767036.1 | NC_022752_p37 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26390 | 26674 |
YP_008767010.1 | NC_022752_p11 | capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7752 | 8582 |
YP_008767038.1 | NC_022752_p39 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26911 | 29112 |
YP_008767018.1 | NC_022752_p19 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 11386 | 11805 |
YP_008767034.1 | NC_022752_p35 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 25860 | 26051 |
YP_008767052.1 | NC_022752_p53 | hypothetical protein | phrog_18511 | unknown function | unknown function | 1 | 37204 | 37389 |
YP_008767007.1 | NC_022752_p8 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 6248 | 6634 |
YP_008767048.1 | NC_022752_p49 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 35751 | 35921 |
YP_008767002.1 | NC_022752_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 1823 | 3292 |
YP_008767030.1 | NC_022752_p31 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 19477 | 22035 |