Genomic map of Salmonella phage SETP13 (NC_022752)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022752
Definition
Salmonella phage SETP13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus.
DB of origin
REFSEQ
Length
42665
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
49.78
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008767049.1 NC_022752_p50 hypothetical protein phrog_12538 unknown function unknown function 1 36379 36573
YP_008767055.1 NC_022752_p56 hypothetical protein phrog_3766 unknown function unknown function 1 38052 38255
YP_008767013.1 NC_022752_p14 hypothetical protein phrog_4451 unknown function unknown function 1 9326 9514
YP_008767003.1 NC_022752_p4 hypothetical protein phrog_4334 unknown function unknown function -1 3328 3696
YP_008767059.1 NC_022752_p60 class I holin phrog_2508 holin lysis 1 39426 39716
YP_008767066.1 NC_022752_p67 hypothetical protein phrog_268 unknown function unknown function 1 41673 42029
YP_008767045.1 NC_022752_p46 EaA protein phrog_60 unknown function unknown function -1 32706 33281
YP_008767053.1 NC_022752_p54 hypothetical protein phrog_9384 unknown function unknown function 1 37386 37574
YP_008767012.1 NC_022752_p13 major tail protein phrog_4069 Hoc-like head decoration head and packaging 1 8939 9289
YP_008767041.1 NC_022752_p42 hypothetical protein phrog_8602 unknown function unknown function -1 31305 31508
YP_008767000.1 NC_022752_p1 phage terminase small subunit phrog_3064 terminase head and packaging 1 40 549
YP_008767056.1 NC_022752_p57 hypothetical protein phrog_4947 unknown function unknown function 1 38258 38623
YP_008767058.1 NC_022752_p59 hypothetical protein phrog_2359 holin lysis 1 39143 39424
YP_008767051.1 NC_022752_p52 hypothetical protein phrog_924 unknown function unknown function 1 36861 37070
YP_008767062.1 NC_022752_p63 hypothetical protein phrog_27442 unknown function unknown function 1 40895 41089
YP_008767050.1 NC_022752_p51 hypothetical protein phrog_625 unknown function unknown function 1 36589 36864
YP_008767047.1 NC_022752_p48 hypothetical protein phrog_5169 unknown function unknown function -1 35521 35754
YP_008767016.1 NC_022752_p17 hypothetical protein phrog_161 head closure Hc1 connector 1 10635 10994
YP_008767015.1 NC_022752_p16 neck protein phrog_3614 unknown function unknown function 1 10030 10635
YP_008767001.1 NC_022752_p2 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 539 1810
YP_008767068.1 NC_022752_p69 hypothetical protein phrog_10134 unknown function unknown function 1 42341 42571
YP_008767035.1 NC_022752_p36 hypothetical protein singleton unknown function unknown function -1 26066 26359
YP_008767014.1 NC_022752_p15 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 9518 10027
YP_008767064.1 NC_022752_p65 hypothetical protein phrog_20019 unknown function unknown function 1 41277 41486
YP_008767033.1 NC_022752_p34 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 24439 25779
YP_008767063.1 NC_022752_p64 hypothetical protein phrog_2180 unknown function unknown function 1 41095 41280
YP_008767057.1 NC_022752_p58 hypothetical protein phrog_1040 peptidase HslV family other 1 38629 39063
YP_008767065.1 NC_022752_p66 hypothetical protein phrog_4684 unknown function unknown function 1 41521 41676
YP_008767027.1 NC_022752_p28 hypothetical protein phrog_384 virion structural protein head and packaging 1 18112 18612
YP_008767022.1 NC_022752_p23 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 13460 14590
YP_008767005.1 NC_022752_p6 tail protein phrog_3945 Hoc-like head decoration head and packaging 1 4845 5303
YP_008767011.1 NC_022752_p12 head protein phrog_4366 head fiber protein head and packaging 1 8643 8927
YP_008767067.1 NC_022752_p68 hypothetical protein phrog_31127 unknown function unknown function 1 42146 42325
YP_008767028.1 NC_022752_p29 hypothetical protein phrog_396 minor tail protein tail 1 18609 19124
YP_008767061.1 NC_022752_p62 endolysin phrog_7 endolysin lysis 1 40226 40708
YP_008767040.1 NC_022752_p41 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 29878 31308
YP_008767029.1 NC_022752_p30 hypothetical protein phrog_329 minor tail protein tail 1 19121 19486
YP_008767043.1 NC_022752_p44 hypothetical protein phrog_34383 unknown function unknown function -1 32079 32336
YP_008767046.1 NC_022752_p47 helicase/primase protein phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 33278 35464
YP_008767060.1 NC_022752_p61 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39694 40239
YP_008767037.1 NC_022752_p38 hypothetical protein phrog_14925 unknown function unknown function -1 26671 26823
YP_008767006.1 NC_022752_p7 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 5447 5872
YP_008767009.1 NC_022752_p10 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 6828 7529
YP_008767026.1 NC_022752_p27 tail tape measure protein phrog_1538 tail length tape measure protein tail 1 15777 18110
YP_008767039.1 NC_022752_p40 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 29170 29796
YP_008767021.1 NC_022752_p22 hypothetical protein singleton unknown function unknown function -1 13230 13433
YP_008767042.1 NC_022752_p43 hypothetical protein phrog_3127 unknown function unknown function -1 31552 32079
YP_008767020.1 NC_022752_p21 hypothetical protein phrog_2452 unknown function unknown function -1 13003 13233
YP_008767044.1 NC_022752_p45 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 32470 32688
YP_008767019.1 NC_022752_p20 tail protein phrog_290 minor tail protein tail 1 11805 12974
YP_008767024.1 NC_022752_p25 hypothetical protein phrog_313 Tail assembly chaperone tail 1 15003 15419
YP_008767023.1 NC_022752_p24 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover -1 14653 14832
YP_008767017.1 NC_022752_p18 tail protein phrog_169 tail completion or Neck1 protein connector 1 10991 11386
YP_008767025.1 NC_022752_p26 hypothetical protein phrog_4557 unknown function unknown function 1 15425 15784
YP_008767008.1 NC_022752_p9 spanin protein phrog_5672 Rz-like spanin lysis 1 6600 6743
YP_008767004.1 NC_022752_p5 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 3799 4842
YP_008767031.1 NC_022752_p32 tailspike protein phrog_1819 tail spike protein tail 1 22048 24102
YP_008767054.1 NC_022752_p55 hypothetical protein phrog_6094 unknown function unknown function 1 37603 38055
YP_008767032.1 NC_022752_p33 hypothetical protein phrog_13851 unknown function unknown function -1 24221 24442
YP_008767036.1 NC_022752_p37 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 26390 26674
YP_008767010.1 NC_022752_p11 capsid protein phrog_247 major head protein head and packaging 1 7752 8582
YP_008767038.1 NC_022752_p39 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 26911 29112
YP_008767018.1 NC_022752_p19 hypothetical protein phrog_179 tail terminator connector 1 11386 11805
YP_008767034.1 NC_022752_p35 hypothetical protein phrog_4879 unknown function unknown function -1 25860 26051
YP_008767052.1 NC_022752_p53 hypothetical protein phrog_18511 unknown function unknown function 1 37204 37389
YP_008767007.1 NC_022752_p8 hypothetical protein phrog_2536 Rz-like spanin lysis 1 6248 6634
YP_008767048.1 NC_022752_p49 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 35751 35921
YP_008767002.1 NC_022752_p3 portal protein phrog_145 portal protein head and packaging 1 1823 3292
YP_008767030.1 NC_022752_p31 tail fiber protein phrog_469 tail protein tail 1 19477 22035