Genomic map of Mycobacterium phage Fredward (NC_022753)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022753
Definition
Mycobacterium phage Fredward, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52282
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
103
%GC
61.24
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008767156.1 NC_022753_p88 hypothetical protein phrog_36591 unknown function unknown function -1 47385 47510
YP_008767106.1 NC_022753_p38 hypothetical protein phrog_2516 unknown function unknown function -1 27829 28023
YP_008767158.1 NC_022753_p90 hypothetical protein phrog_9135 unknown function unknown function -1 47623 47838
YP_008767078.1 NC_022753_p10 protease phrog_193 head maturation protease head and packaging 1 8845 9747
YP_008767157.1 NC_022753_p89 hypothetical protein phrog_1477 unknown function unknown function -1 47507 47626
YP_008767110.1 NC_022753_p42 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28822 30666
YP_008767139.1 NC_022753_p71 hypothetical protein phrog_289 GTP-binding domain other -1 40579 40950
YP_008767138.1 NC_022753_p70 hypothetical protein phrog_1374 unknown function unknown function -1 40391 40549
YP_008767097.1 NC_022753_p29 integrase (S-Int) phrog_95 integrase integration and excision -1 23577 25079
YP_008767112.1 NC_022753_p44 HTH/DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30973 31233
YP_008767083.1 NC_022753_p15 hypothetical protein phrog_320 head closure Hc1 connector 1 11867 12226
YP_008767101.1 NC_022753_p33 hypothetical protein phrog_542 unknown function unknown function -1 26430 26636
YP_008767124.1 NC_022753_p56 hypothetical protein phrog_5270 unknown function unknown function -1 36826 37143
YP_008767080.1 NC_022753_p12 structural protein phrog_10 major head protein head and packaging 1 10354 11304
YP_008767168.1 NC_022753_p100 hypothetical protein singleton unknown function unknown function -1 50886 51017
YP_008767126.1 NC_022753_p58 hypothetical protein phrog_19096 unknown function unknown function -1 38013 38351
YP_008767079.1 NC_022753_p11 scaffold protein phrog_233 head scaffolding protein head and packaging 1 9803 10324
YP_008767129.1 NC_022753_p61 hypothetical protein phrog_13032 unknown function unknown function -1 38959 39117
YP_008767113.1 NC_022753_p45 hypothetical protein phrog_21644 DNA binding protein DNA, RNA and nucleotide metabolism -1 31226 31408
YP_008767123.1 NC_022753_p55 hypothetical protein phrog_5242 unknown function unknown function -1 36551 36829
YP_008767100.1 NC_022753_p32 hypothetical protein phrog_6549 unknown function unknown function -1 26242 26430
YP_008767155.1 NC_022753_p87 hypothetical protein phrog_5476 unknown function unknown function -1 47083 47388
YP_008767141.1 NC_022753_p73 RDF protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 41716 42138
YP_008767122.1 NC_022753_p54 metagenomic prevalent protein phrog_1167 phosphofructokinase other -1 36084 36554
YP_008767118.1 NC_022753_p50 hypothetical protein phrog_5897 unknown function unknown function -1 34402 34500
YP_008767169.1 NC_022753_p101 hypothetical protein singleton unknown function unknown function 1 51330 51455
YP_008767161.1 NC_022753_p93 hypothetical protein phrog_11344 unknown function unknown function -1 48584 49399
YP_008767094.1 NC_022753_p26 hypothetical protein phrog_1397 unknown function unknown function 1 21206 21565
YP_008767165.1 NC_022753_p97 hypothetical protein phrog_1445 unknown function unknown function -1 50280 50357
YP_008767099.1 NC_022753_p31 cytidine deaminase phrog_2369 dCMP deaminase DNA, RNA and nucleotide metabolism -1 25785 26264
YP_008767109.1 NC_022753_p41 hypothetical protein phrog_2650 unknown function unknown function -1 28360 28800
YP_008767070.1 NC_022753_p2 tail protein phrog_226 minor tail protein tail 1 795 1262
YP_008767135.1 NC_022753_p67 hypothetical protein phrog_18779 unknown function unknown function -1 39912 40040
YP_008767151.1 NC_022753_p83 hypothetical protein phrog_5644 unknown function unknown function -1 45974 46336
YP_008767096.1 NC_022753_p28 hypothetical protein phrog_2697 unknown function unknown function -1 23350 23580
YP_008767089.1 NC_022753_p21 tapemeasure protein phrog_305 tail length tape measure protein tail 1 14522 17599
YP_008767164.1 NC_022753_p96 hypothetical protein phrog_16745 unknown function unknown function -1 50028 50249
YP_008767073.1 NC_022753_p5 structural protein phrog_356 minor tail protein tail 1 3347 4006
YP_008767134.1 NC_022753_p66 hypothetical protein phrog_3369 unknown function unknown function -1 39754 39915
YP_008767120.1 NC_022753_p52 RDF protein phrog_221 metallo-phosphoesterase other -1 35118 35885
YP_008767085.1 NC_022753_p17 hypothetical protein phrog_123 tail terminator connector 1 12591 12998
YP_008767163.1 NC_022753_p95 hypothetical protein phrog_5371 unknown function unknown function -1 49777 50025
YP_008767166.1 NC_022753_p98 hypothetical protein phrog_9783 unknown function unknown function -1 50457 50543
YP_008767162.1 NC_022753_p94 hypothetical protein phrog_12994 unknown function unknown function -1 49402 49707
YP_008767095.1 NC_022753_p27 structural protein phrog_2689 minor tail protein tail 1 21576 23297
YP_008767091.1 NC_022753_p23 structural protein phrog_110 minor tail protein tail 1 18628 20418
YP_008767098.1 NC_022753_p30 hypothetical protein phrog_733 excisionase integration and excision 1 25227 25667
YP_008767137.1 NC_022753_p69 hypothetical protein phrog_1123 unknown function unknown function -1 40137 40391
YP_008767125.1 NC_022753_p57 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37140 37793
YP_008767149.1 NC_022753_p81 hypothetical protein phrog_4421 unknown function unknown function -1 44958 45221
YP_008767103.1 NC_022753_p35 hypothetical protein phrog_21271 unknown function unknown function -1 26904 27098
YP_008767105.1 NC_022753_p37 hypothetical protein phrog_15233 unknown function unknown function -1 27519 27839
YP_008767143.1 NC_022753_p75 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42221 43021
YP_008767076.1 NC_022753_p8 terminase phrog_9 terminase large subunit head and packaging 1 5664 7418
YP_008767142.1 NC_022753_p74 hypothetical protein phrog_25146 unknown function unknown function -1 42102 42224
YP_008767114.1 NC_022753_p46 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 31465 31986
YP_008767069.1 NC_022753_p1 WhiB/HNH protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 505 798
YP_008767148.1 NC_022753_p80 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44039 44956
YP_008767150.1 NC_022753_p82 repressor phrog_357 transcriptional repressor transcription regulation -1 45244 45786
YP_008767108.1 NC_022753_p40 hypothetical protein phrog_1545 unknown function unknown function -1 28202 28363
YP_008767132.1 NC_022753_p64 hypothetical protein phrog_1498 unknown function unknown function -1 39411 39584
YP_008767093.1 NC_022753_p25 hypothetical protein phrog_981 minor tail protein tail 1 20898 21209
YP_008767119.1 NC_022753_p51 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 34491 35114
YP_008767104.1 NC_022753_p36 hypothetical protein phrog_383 unknown function unknown function -1 27095 27532
YP_008767133.1 NC_022753_p65 hypothetical protein phrog_8372 unknown function unknown function -1 39581 39757
YP_008767159.1 NC_022753_p91 hypothetical protein phrog_2124 unknown function unknown function -1 47840 47980
YP_008767145.1 NC_022753_p77 hypothetical protein phrog_2903 unknown function unknown function -1 43169 43396
YP_008767107.1 NC_022753_p39 hypothetical protein phrog_6689 unknown function unknown function -1 28020 28202
YP_008767084.1 NC_022753_p16 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 12226 12594
YP_008767074.1 NC_022753_p6 lysin A phrog_1512 endolysin lysis 1 4159 4836
YP_008767152.1 NC_022753_p84 hypothetical protein phrog_1178 unknown function unknown function -1 46340 46582
YP_008767154.1 NC_022753_p86 hypothetical protein phrog_1875 unknown function unknown function -1 46833 47081
YP_008767081.1 NC_022753_p13 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 11371 11745
YP_008767127.1 NC_022753_p59 hypothetical protein phrog_4670 unknown function unknown function -1 38348 38494
YP_008767128.1 NC_022753_p60 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 38499 38957
YP_008767090.1 NC_022753_p22 structural protein phrog_106 minor tail protein tail 1 17609 18631
YP_008767072.1 NC_022753_p4 structural protein phrog_1197 tail protein tail 1 2306 3343
YP_008767147.1 NC_022753_p79 hypothetical protein phrog_642 unknown function unknown function -1 43708 44010
YP_008767131.1 NC_022753_p63 hypothetical protein phrog_16665 unknown function unknown function -1 39277 39414
YP_008767088.1 NC_022753_p20 hypothetical protein phrog_3656 tail assembly chaperone tail 1 14059 14529
YP_008767111.1 NC_022753_p43 hypothetical protein phrog_762 unknown function unknown function -1 30674 30976
YP_008767136.1 NC_022753_p68 hypothetical protein phrog_19854 unknown function unknown function -1 40027 40149
YP_008767170.1 NC_022753_p102 hypothetical protein singleton unknown function unknown function -1 51711 51881
YP_008767153.1 NC_022753_p85 hypothetical protein phrog_5066 unknown function unknown function -1 46579 46836
YP_008767075.1 NC_022753_p7 lysin B phrog_102 endolysin lysis 1 4833 5642
YP_008767087.1 NC_022753_p19 hypothetical protein phrog_330 tail assembly chaperone tail 1 13727 14092
YP_008767102.1 NC_022753_p34 hypothetical protein phrog_980 unknown function unknown function -1 26633 26911
YP_008767092.1 NC_022753_p24 hypothetical protein phrog_352 minor tail protein tail 1 20438 20884
YP_008767117.1 NC_022753_p49 hypothetical protein phrog_499 unknown function unknown function -1 34240 34401
YP_008767082.1 NC_022753_p14 hypothetical protein phrog_2348 unknown function unknown function 1 11742 11870
YP_008767086.1 NC_022753_p18 structural protein phrog_117 major tail protein tail 1 13012 13614
YP_008767146.1 NC_022753_p78 hypothetical protein phrog_520 unknown function unknown function -1 43443 43727
YP_008767167.1 NC_022753_p99 hypothetical protein phrog_3471 unknown function unknown function -1 50611 50865
YP_008767160.1 NC_022753_p92 hypothetical protein phrog_2059 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 47997 48539
YP_008767171.1 NC_022753_p103 hypothetical protein singleton unknown function unknown function -1 51941 52210
YP_008767115.1 NC_022753_p47 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32011 34068
YP_008767071.1 NC_022753_p3 tail protein phrog_1260 minor tail protein tail 1 1344 2309
YP_008767140.1 NC_022753_p72 hypothetical protein phrog_2068 phosphoribosyl transferase other -1 40974 41693
YP_008767121.1 NC_022753_p53 hypothetical protein phrog_17770 unknown function unknown function -1 35882 36091
YP_008767077.1 NC_022753_p9 portal protein phrog_104 portal protein head and packaging 1 7418 8848
YP_008767116.1 NC_022753_p48 hypothetical protein phrog_13215 unknown function unknown function -1 34061 34243
YP_008767144.1 NC_022753_p76 hypothetical protein phrog_20834 unknown function unknown function -1 43023 43172
YP_008767130.1 NC_022753_p62 hypothetical protein phrog_19806 unknown function unknown function -1 39107 39280