| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022754 |
Definition |
Salmonella phage SETP7, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
42749 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
49.9 |
Number of singletons |
2 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008767173.1 | NC_022754_p2 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 536 | 1807 |
| YP_008767206.1 | NC_022754_p35 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26533 | 26820 |
| YP_008767194.1 | NC_022754_p23 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | -1 | 14114 | 14293 |
| YP_008767183.1 | NC_022754_p12 | head protein | phrog_4366 | head fiber protein | head and packaging | 1 | 8334 | 8618 |
| YP_008767202.1 | NC_022754_p31 | tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 21508 | 23562 |
| YP_008767172.1 | NC_022754_p1 | phage terminase small subunit | phrog_3064 | terminase | head and packaging | 1 | 40 | 546 |
| YP_008767201.1 | NC_022754_p30 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 18937 | 21495 |
| YP_008767215.1 | NC_022754_p44 | EaA protein | phrog_60 | unknown function | unknown function | -1 | 33340 | 33747 |
| YP_008767186.1 | NC_022754_p15 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9209 | 9718 |
| YP_008767213.1 | NC_022754_p42 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32460 | 32960 |
| YP_008767198.1 | NC_022754_p27 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 17572 | 18072 |
| YP_008767216.1 | NC_022754_p45 | primase/helicase protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 33744 | 35930 |
| YP_008767174.1 | NC_022754_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 1820 | 3289 |
| YP_008767204.1 | NC_022754_p33 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 23848 | 26229 |
| YP_008767226.1 | NC_022754_p55 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 38433 | 38798 |
| YP_008767188.1 | NC_022754_p17 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 10326 | 10685 |
| YP_008767181.1 | NC_022754_p10 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6519 | 7220 |
| YP_008767219.1 | NC_022754_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36511 | 36657 |
| YP_008767211.1 | NC_022754_p40 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 30478 | 31902 |
| YP_008767205.1 | NC_022754_p34 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 26310 | 26501 |
| YP_008767184.1 | NC_022754_p13 | major tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 8630 | 8980 |
| YP_008767237.1 | NC_022754_p66 | hypothetical protein | phrog_2531 | unknown function | unknown function | 1 | 42133 | 42411 |
| YP_008767182.1 | NC_022754_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7224 | 8273 |
| YP_008767176.1 | NC_022754_p5 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 4116 | 5159 |
| YP_008767191.1 | NC_022754_p20 | tail protein | phrog_290 | minor tail protein | tail | 1 | 11496 | 12665 |
| YP_008767220.1 | NC_022754_p49 | hypothetical protein | phrog_12538 | unknown function | unknown function | 1 | 36845 | 37048 |
| YP_008767223.1 | NC_022754_p52 | hypothetical protein | phrog_6094 | unknown function | unknown function | 1 | 37715 | 38059 |
| YP_008767217.1 | NC_022754_p46 | hypothetical protein | phrog_5169 | unknown function | unknown function | -1 | 35988 | 36221 |
| YP_008767187.1 | NC_022754_p16 | neck protein | phrog_3614 | unknown function | unknown function | 1 | 9721 | 10326 |
| YP_008767189.1 | NC_022754_p18 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10682 | 11077 |
| YP_008767212.1 | NC_022754_p41 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 31944 | 32456 |
| YP_008767175.1 | NC_022754_p4 | hypothetical protein | phrog_6095 | amidase | lysis | -1 | 3320 | 3973 |
| YP_008767227.1 | NC_022754_p56 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 38804 | 39238 |
| YP_008767209.1 | NC_022754_p38 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27511 | 29712 |
| YP_008767179.1 | NC_022754_p8 | spanin protein | phrog_2536 | Rz-like spanin | lysis | 1 | 5939 | 6325 |
| YP_008767218.1 | NC_022754_p47 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 36218 | 36388 |
| YP_008767200.1 | NC_022754_p29 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 18581 | 18946 |
| YP_008767221.1 | NC_022754_p50 | hypothetical protein | phrog_18511 | unknown function | unknown function | 1 | 37305 | 37490 |
| YP_008767233.1 | NC_022754_p62 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 41270 | 41455 |
| YP_008767224.1 | NC_022754_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38084 | 38236 |
| YP_008767225.1 | NC_022754_p54 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 38233 | 38436 |
| YP_008767232.1 | NC_022754_p61 | hypothetical protein | phrog_27442 | unknown function | unknown function | 1 | 41070 | 41264 |
| YP_008767178.1 | NC_022754_p7 | hypothetical protein | phrog_14923 | unknown function | unknown function | 1 | 5775 | 5894 |
| YP_008767229.1 | NC_022754_p58 | class I holin | phrog_2508 | holin | lysis | 1 | 39601 | 39891 |
| YP_008767197.1 | NC_022754_p26 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 15237 | 17570 |
| YP_008767207.1 | NC_022754_p36 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26810 | 27307 |
| YP_008767235.1 | NC_022754_p64 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 41607 | 41762 |
| YP_008767238.1 | NC_022754_p67 | hypothetical protein | phrog_10134 | unknown function | unknown function | 1 | 42425 | 42655 |
| YP_008767208.1 | NC_022754_p37 | hypothetical protein | phrog_10404 | unknown function | unknown function | -1 | 27390 | 27521 |
| YP_008767234.1 | NC_022754_p63 | hypothetical protein | phrog_3002 | unknown function | unknown function | 1 | 41452 | 41610 |
| YP_008767177.1 | NC_022754_p6 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 5162 | 5620 |
| YP_008767193.1 | NC_022754_p22 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 12921 | 14051 |
| YP_008767210.1 | NC_022754_p39 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 29770 | 30396 |
| YP_008767214.1 | NC_022754_p43 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 33093 | 33311 |
| YP_008767228.1 | NC_022754_p57 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 39318 | 39599 |
| YP_008767236.1 | NC_022754_p65 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 41759 | 42115 |
| YP_008767180.1 | NC_022754_p9 | spanin protein | phrog_5672 | Rz-like spanin | lysis | 1 | 6291 | 6434 |
| YP_008767185.1 | NC_022754_p14 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 9017 | 9205 |
| YP_008767203.1 | NC_022754_p32 | hypothetical protein | phrog_5915 | unknown function | unknown function | -1 | 23681 | 23851 |
| YP_008767196.1 | NC_022754_p25 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 14885 | 15244 |
| YP_008767231.1 | NC_022754_p60 | endolysin | phrog_7 | endolysin | lysis | 1 | 40401 | 40883 |
| YP_008767222.1 | NC_022754_p51 | hypothetical protein | phrog_9384 | unknown function | unknown function | 1 | 37487 | 37651 |
| YP_008767230.1 | NC_022754_p59 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40085 | 40414 |
| YP_008767199.1 | NC_022754_p28 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 18069 | 18584 |
| YP_008767190.1 | NC_022754_p19 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 11077 | 11496 |
| YP_008767195.1 | NC_022754_p24 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 14463 | 14879 |
| YP_008767192.1 | NC_022754_p21 | hypothetical protein | phrog_2452 | unknown function | unknown function | -1 | 12694 | 12924 |