Genomic map of Lactobacillus phage J-1 (NC_022756)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022756
Definition
Lactobacillus phage J-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40931
Host Name
Lactobacillus paracasei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
44.76
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008767273.1 NC_022756_p30 hypothetical protein singleton unknown function unknown function -1 25105 25311
YP_008767288.1 NC_022756_p45 hypothetical protein phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 32951 33316
YP_008767256.1 NC_022756_p13 tail assembly chaperone phrog_5981 unknown function unknown function 1 8036 8550
YP_008767262.1 NC_022756_p19 hypothetical protein phrog_134 unknown function unknown function 1 18916 19047
YP_008767275.1 NC_022756_p32 hypothetical protein phrog_373 anti-repressor transcription regulation 1 25687 26298
YP_008767286.1 NC_022756_p43 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 32426 32713
YP_008767294.1 NC_022756_p51 hypothetical protein phrog_27955 unknown function unknown function 1 34977 35174
YP_008767295.1 NC_022756_p52 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 35164 35457
YP_008767274.1 NC_022756_p31 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 25430 25684
YP_008767293.1 NC_022756_p50 hypothetical protein phrog_24767 unknown function unknown function 1 34782 34952
YP_008767297.1 NC_022756_p54 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 35662 35880
YP_008767269.1 NC_022756_p26 hypothetical protein phrog_9771 unknown function unknown function 1 23265 23495
YP_008767272.1 NC_022756_p29 transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 24488 25117
YP_008767264.1 NC_022756_p21 hypothetical protein phrog_3671 unknown function unknown function 1 19445 19687
YP_008767261.1 NC_022756_p18 hypothetical protein phrog_4573 unknown function unknown function 1 18600 18923
YP_008767282.1 NC_022756_p39 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 29473 29958
YP_008767245.1 NC_022756_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 567 2279
YP_008767244.1 NC_022756_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 90 545
YP_008767254.1 NC_022756_p11 hypothetical protein phrog_78 tail terminator connector 1 6900 7286
YP_008767250.1 NC_022756_p7 major capsid S phrog_10 major head protein head and packaging 1 4366 5568
YP_008767255.1 NC_022756_p12 major tail protein phrog_88 major tail protein tail 1 7320 7937
YP_008767292.1 NC_022756_p49 hypothetical protein phrog_10710 unknown function unknown function 1 34544 34789
YP_008767302.1 NC_022756_p59 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38262 38792
YP_008767304.1 NC_022756_p61 hypothetical protein phrog_7615 unknown function unknown function 1 39119 39442
YP_008767257.1 NC_022756_p14 tail assembly chaperone phrog_5981 unknown function unknown function 1 8036 8449
YP_008767291.1 NC_022756_p48 hypothetical protein phrog_98 unknown function unknown function 1 34144 34551
YP_008767287.1 NC_022756_p44 hypothetical protein phrog_5418 unknown function unknown function 1 32700 32954
YP_008767268.1 NC_022756_p25 hypothetical protein phrog_7805 unknown function unknown function -1 22311 23246
YP_008767252.1 NC_022756_p9 head tail joining protein phrog_25 head closure Hc1 connector 1 6185 6514
YP_008767300.1 NC_022756_p57 hypothetical protein phrog_10399 unknown function unknown function 1 36779 37033
YP_008767258.1 NC_022756_p15 tape measure phrog_1293 tail length tape measure protein tail 1 8572 13434
YP_008767266.1 NC_022756_p23 lysin phrog_3393 endolysin lysis 1 19951 21003
YP_008767306.1 NC_022756_p63 hypothetical protein phrog_4581 terminase small subunit head and packaging 1 40026 40820
YP_008767263.1 NC_022756_p20 hypothetical protein phrog_4325 holin lysis 1 19072 19464
YP_008767259.1 NC_022756_p16 tail component phrog_202 distal tail protein Dit tail 1 13435 15474
YP_008767303.1 NC_022756_p60 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 38796 39116
YP_008767278.1 NC_022756_p35 hypothetical protein phrog_5205 unknown function unknown function 1 26924 27127
YP_008767298.1 NC_022756_p55 transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 35945 36382
YP_008767290.1 NC_022756_p47 cytosine-specific methyltransferase phrog_36267 DNA methyltransferase other 1 33678 34133
YP_008767246.1 NC_022756_p3 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2291 2482
YP_008767280.1 NC_022756_p37 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 28032 28787
YP_008767301.1 NC_022756_p58 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 37058 38275
YP_008767277.1 NC_022756_p34 hypothetical protein phrog_5144 unknown function unknown function 1 26767 26919
YP_008767283.1 NC_022756_p40 hypothetical protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 29939 30808
YP_008767289.1 NC_022756_p46 hypothetical protein phrog_12824 endonuclease DNA, RNA and nucleotide metabolism 1 33328 33666
YP_008767249.1 NC_022756_p6 major capsid L phrog_10 major head protein head and packaging 1 4366 5825
YP_008767296.1 NC_022756_p53 hypothetical protein phrog_15069 unknown function unknown function 1 35450 35641
YP_008767276.1 NC_022756_p33 hypothetical protein phrog_823 unknown function unknown function 1 26326 26685
YP_008767299.1 NC_022756_p56 hypothetical protein phrog_21820 unknown function unknown function 1 36468 36617
YP_008767248.1 NC_022756_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3695 4324
YP_008767260.1 NC_022756_p17 host interaction protein phrog_588 tail fiber protein and host specificity tail 1 15471 18590
YP_008767251.1 NC_022756_p8 head tail joining protein phrog_40 head-tail adaptor Ad1 connector 1 5836 6195
YP_008767271.1 NC_022756_p28 hypothetical protein phrog_5319 outer membrane protein other -1 23756 24433
YP_008767253.1 NC_022756_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6514 6900
YP_008767267.1 NC_022756_p24 integrase phrog_1 integrase integration and excision -1 21224 22375
YP_008767284.1 NC_022756_p41 helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 30805 32067
YP_008767247.1 NC_022756_p4 portal protein phrog_12 portal protein head and packaging 1 2488 3741
YP_008767270.1 NC_022756_p27 hypothetical protein phrog_32683 unknown function unknown function -1 23656 23895
YP_008767265.1 NC_022756_p22 holin phrog_1299 holin lysis 1 19677 19949
YP_008767279.1 NC_022756_p36 hypothetical protein phrog_674 unknown function unknown function 1 27145 28032
YP_008767285.1 NC_022756_p42 hypothetical protein phrog_8182 unknown function unknown function 1 32069 32413
YP_008767281.1 NC_022756_p38 hypothetical protein phrog_398 unknown function unknown function 1 28784 29458
YP_008767305.1 NC_022756_p62 hypothetical protein phrog_10715 hydrolase other 1 39455 40036