Genomic map of Lactobacillus phage PL-1 (NC_022757)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022757
Definition
Lactobacillus phage PL-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38880
Host Name
Lactobacillus paracasei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
44.88
Number of singletons
0
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008767364.1 NC_022757_p58 hypothetical protein phrog_10715 hydrolase other 1 37404 37985
YP_008767332.1 NC_022757_p26 hypothetical protein phrog_9771 unknown function unknown function 1 23118 23348
YP_008767316.1 NC_022757_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6514 6900
YP_008767334.1 NC_022757_p28 hypothetical protein phrog_373 anti-repressor transcription regulation 1 23636 24247
YP_008767361.1 NC_022757_p55 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36211 36741
YP_008767308.1 NC_022757_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 567 2279
YP_008767330.1 NC_022757_p24 integrase phrog_1 integrase integration and excision -1 21077 22228
YP_008767337.1 NC_022757_p31 hypothetical protein phrog_5205 unknown function unknown function 1 24873 25076
YP_008767346.1 NC_022757_p40 hypothetical protein phrog_5418 unknown function unknown function 1 30649 30903
YP_008767329.1 NC_022757_p23 lysin phrog_3393 endolysin lysis 1 19804 20856
YP_008767362.1 NC_022757_p56 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 36745 37065
YP_008767317.1 NC_022757_p11 hypothetical protein phrog_78 tail terminator connector 1 6900 7286
YP_008767309.1 NC_022757_p3 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2291 2482
YP_008767325.1 NC_022757_p19 hypothetical protein phrog_134 unknown function unknown function 1 18769 18900
YP_008767320.1 NC_022757_p14 tail assembly chaperone phrog_5981 unknown function unknown function 1 8036 8449
YP_008767323.1 NC_022757_p17 host interaction protein phrog_588 tail fiber protein and host specificity tail 1 15324 18443
YP_008767312.1 NC_022757_p6 major capsid L phrog_10 major head protein head and packaging 1 4366 5825
YP_008767333.1 NC_022757_p27 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 23379 23633
YP_008767360.1 NC_022757_p54 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 35007 36224
YP_008767357.1 NC_022757_p51 transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 33894 34331
YP_008767311.1 NC_022757_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3695 4324
YP_008767344.1 NC_022757_p38 hypothetical protein phrog_8182 unknown function unknown function 1 30018 30362
YP_008767354.1 NC_022757_p48 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 33113 33406
YP_008767363.1 NC_022757_p57 hypothetical protein phrog_7615 unknown function unknown function 1 37068 37391
YP_008767358.1 NC_022757_p52 hypothetical protein phrog_21820 unknown function unknown function 1 34417 34566
YP_008767338.1 NC_022757_p32 hypothetical protein phrog_674 unknown function unknown function 1 25094 25981
YP_008767351.1 NC_022757_p45 hypothetical protein phrog_10710 unknown function unknown function 1 32493 32738
YP_008767345.1 NC_022757_p39 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 30375 30662
YP_008767365.1 NC_022757_p59 hypothetical protein phrog_4581 terminase small subunit head and packaging 1 37975 38769
YP_008767328.1 NC_022757_p22 holin phrog_1299 holin lysis 1 19530 19802
YP_008767335.1 NC_022757_p29 hypothetical protein phrog_823 unknown function unknown function 1 24275 24634
YP_008767350.1 NC_022757_p44 hypothetical protein phrog_98 unknown function unknown function 1 32093 32500
YP_008767331.1 NC_022757_p25 hypothetical protein phrog_7805 unknown function unknown function -1 22164 23099
YP_008767322.1 NC_022757_p16 tail component phrog_202 distal tail protein Dit tail 1 13435 15327
YP_008767353.1 NC_022757_p47 hypothetical protein phrog_27955 unknown function unknown function 1 32926 33123
YP_008767347.1 NC_022757_p41 hypothetical protein phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30900 31265
YP_008767324.1 NC_022757_p18 hypothetical protein phrog_4573 unknown function unknown function 1 18453 18782
YP_008767327.1 NC_022757_p21 hypothetical protein phrog_3671 unknown function unknown function 1 19298 19540
YP_008767356.1 NC_022757_p50 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 33611 33829
YP_008767310.1 NC_022757_p4 portal protein phrog_12 portal protein head and packaging 1 2488 3741
YP_008767343.1 NC_022757_p37 helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 28754 30016
YP_008767349.1 NC_022757_p43 cytosine-specific methyltransferase phrog_36267 DNA methyltransferase other 1 31627 32082
YP_008767336.1 NC_022757_p30 hypothetical protein phrog_5144 unknown function unknown function 1 24716 24868
YP_008767326.1 NC_022757_p20 hypothetical protein phrog_4325 holin lysis 1 18925 19317
YP_008767313.1 NC_022757_p7 major capsid S phrog_10 major head protein head and packaging 1 4366 5568
YP_008767315.1 NC_022757_p9 head tail joining protein phrog_25 head closure Hc1 connector 1 6185 6514
YP_008767341.1 NC_022757_p35 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 27422 27907
YP_008767339.1 NC_022757_p33 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 25981 26736
YP_008767355.1 NC_022757_p49 hypothetical protein phrog_15069 unknown function unknown function 1 33399 33590
YP_008767314.1 NC_022757_p8 head tail joining protein phrog_40 head-tail adaptor Ad1 connector 1 5836 6195
YP_008767319.1 NC_022757_p13 tail assembly chaperone phrog_5981 unknown function unknown function 1 8036 8550
YP_008767307.1 NC_022757_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 90 545
YP_008767342.1 NC_022757_p36 hypothetical protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 27888 28757
YP_008767340.1 NC_022757_p34 hypothetical protein phrog_398 unknown function unknown function 1 26733 27407
YP_008767352.1 NC_022757_p46 hypothetical protein phrog_24767 unknown function unknown function 1 32731 32901
YP_008767359.1 NC_022757_p53 hypothetical protein phrog_10399 unknown function unknown function 1 34728 34982
YP_008767318.1 NC_022757_p12 major tail protein phrog_88 major tail protein tail 1 7320 7937
YP_008767321.1 NC_022757_p15 tape measure phrog_1293 tail length tape measure protein tail 1 8572 13434
YP_008767348.1 NC_022757_p42 hypothetical protein phrog_12824 endonuclease DNA, RNA and nucleotide metabolism 1 31277 31615