| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022757 |
Definition |
Lactobacillus phage PL-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
38880 |
Host Name |
Lactobacillus paracasei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
44.88 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008767364.1 | NC_022757_p58 | hypothetical protein | phrog_10715 | hydrolase | other | 1 | 37404 | 37985 |
| YP_008767332.1 | NC_022757_p26 | hypothetical protein | phrog_9771 | unknown function | unknown function | 1 | 23118 | 23348 |
| YP_008767316.1 | NC_022757_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6514 | 6900 |
| YP_008767334.1 | NC_022757_p28 | hypothetical protein | phrog_373 | anti-repressor | transcription regulation | 1 | 23636 | 24247 |
| YP_008767361.1 | NC_022757_p55 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36211 | 36741 |
| YP_008767308.1 | NC_022757_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 567 | 2279 |
| YP_008767330.1 | NC_022757_p24 | integrase | phrog_1 | integrase | integration and excision | -1 | 21077 | 22228 |
| YP_008767337.1 | NC_022757_p31 | hypothetical protein | phrog_5205 | unknown function | unknown function | 1 | 24873 | 25076 |
| YP_008767346.1 | NC_022757_p40 | hypothetical protein | phrog_5418 | unknown function | unknown function | 1 | 30649 | 30903 |
| YP_008767329.1 | NC_022757_p23 | lysin | phrog_3393 | endolysin | lysis | 1 | 19804 | 20856 |
| YP_008767362.1 | NC_022757_p56 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 36745 | 37065 |
| YP_008767317.1 | NC_022757_p11 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6900 | 7286 |
| YP_008767309.1 | NC_022757_p3 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2291 | 2482 |
| YP_008767325.1 | NC_022757_p19 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 18769 | 18900 |
| YP_008767320.1 | NC_022757_p14 | tail assembly chaperone | phrog_5981 | unknown function | unknown function | 1 | 8036 | 8449 |
| YP_008767323.1 | NC_022757_p17 | host interaction protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 15324 | 18443 |
| YP_008767312.1 | NC_022757_p6 | major capsid L | phrog_10 | major head protein | head and packaging | 1 | 4366 | 5825 |
| YP_008767333.1 | NC_022757_p27 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 23379 | 23633 |
| YP_008767360.1 | NC_022757_p54 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 35007 | 36224 |
| YP_008767357.1 | NC_022757_p51 | transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 33894 | 34331 |
| YP_008767311.1 | NC_022757_p5 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3695 | 4324 |
| YP_008767344.1 | NC_022757_p38 | hypothetical protein | phrog_8182 | unknown function | unknown function | 1 | 30018 | 30362 |
| YP_008767354.1 | NC_022757_p48 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 33113 | 33406 |
| YP_008767363.1 | NC_022757_p57 | hypothetical protein | phrog_7615 | unknown function | unknown function | 1 | 37068 | 37391 |
| YP_008767358.1 | NC_022757_p52 | hypothetical protein | phrog_21820 | unknown function | unknown function | 1 | 34417 | 34566 |
| YP_008767338.1 | NC_022757_p32 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 25094 | 25981 |
| YP_008767351.1 | NC_022757_p45 | hypothetical protein | phrog_10710 | unknown function | unknown function | 1 | 32493 | 32738 |
| YP_008767345.1 | NC_022757_p39 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 30375 | 30662 |
| YP_008767365.1 | NC_022757_p59 | hypothetical protein | phrog_4581 | terminase small subunit | head and packaging | 1 | 37975 | 38769 |
| YP_008767328.1 | NC_022757_p22 | holin | phrog_1299 | holin | lysis | 1 | 19530 | 19802 |
| YP_008767335.1 | NC_022757_p29 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 24275 | 24634 |
| YP_008767350.1 | NC_022757_p44 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 32093 | 32500 |
| YP_008767331.1 | NC_022757_p25 | hypothetical protein | phrog_7805 | unknown function | unknown function | -1 | 22164 | 23099 |
| YP_008767322.1 | NC_022757_p16 | tail component | phrog_202 | distal tail protein Dit | tail | 1 | 13435 | 15327 |
| YP_008767353.1 | NC_022757_p47 | hypothetical protein | phrog_27955 | unknown function | unknown function | 1 | 32926 | 33123 |
| YP_008767347.1 | NC_022757_p41 | hypothetical protein | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30900 | 31265 |
| YP_008767324.1 | NC_022757_p18 | hypothetical protein | phrog_4573 | unknown function | unknown function | 1 | 18453 | 18782 |
| YP_008767327.1 | NC_022757_p21 | hypothetical protein | phrog_3671 | unknown function | unknown function | 1 | 19298 | 19540 |
| YP_008767356.1 | NC_022757_p50 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 33611 | 33829 |
| YP_008767310.1 | NC_022757_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2488 | 3741 |
| YP_008767343.1 | NC_022757_p37 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 28754 | 30016 |
| YP_008767349.1 | NC_022757_p43 | cytosine-specific methyltransferase | phrog_36267 | DNA methyltransferase | other | 1 | 31627 | 32082 |
| YP_008767336.1 | NC_022757_p30 | hypothetical protein | phrog_5144 | unknown function | unknown function | 1 | 24716 | 24868 |
| YP_008767326.1 | NC_022757_p20 | hypothetical protein | phrog_4325 | holin | lysis | 1 | 18925 | 19317 |
| YP_008767313.1 | NC_022757_p7 | major capsid S | phrog_10 | major head protein | head and packaging | 1 | 4366 | 5568 |
| YP_008767315.1 | NC_022757_p9 | head tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 6185 | 6514 |
| YP_008767341.1 | NC_022757_p35 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 27422 | 27907 |
| YP_008767339.1 | NC_022757_p33 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 25981 | 26736 |
| YP_008767355.1 | NC_022757_p49 | hypothetical protein | phrog_15069 | unknown function | unknown function | 1 | 33399 | 33590 |
| YP_008767314.1 | NC_022757_p8 | head tail joining protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5836 | 6195 |
| YP_008767319.1 | NC_022757_p13 | tail assembly chaperone | phrog_5981 | unknown function | unknown function | 1 | 8036 | 8550 |
| YP_008767307.1 | NC_022757_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 90 | 545 |
| YP_008767342.1 | NC_022757_p36 | hypothetical protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 27888 | 28757 |
| YP_008767340.1 | NC_022757_p34 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 26733 | 27407 |
| YP_008767352.1 | NC_022757_p46 | hypothetical protein | phrog_24767 | unknown function | unknown function | 1 | 32731 | 32901 |
| YP_008767359.1 | NC_022757_p53 | hypothetical protein | phrog_10399 | unknown function | unknown function | 1 | 34728 | 34982 |
| YP_008767318.1 | NC_022757_p12 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7320 | 7937 |
| YP_008767321.1 | NC_022757_p15 | tape measure | phrog_1293 | tail length tape measure protein | tail | 1 | 8572 | 13434 |
| YP_008767348.1 | NC_022757_p42 | hypothetical protein | phrog_12824 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 31277 | 31615 |