Genomic map of Staphylococcus phage YMC/09/04/R1988 (NC_022758)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022758
Definition
Staphylococcus phage YMC/09/04/R1988, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Triavirus; unclassified Triavirus.
DB of origin
REFSEQ
Length
44459
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
33.37
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008767401.1 NC_022758_p36 hypothetical protein phrog_643 transcriptional regulator transcription regulation 1 29104 29349
YP_008767416.1 NC_022758_p51 hypothetical protein phrog_98 unknown function unknown function 1 36660 37007
YP_008767383.1 NC_022758_p18 hypothetical protein phrog_287 minor tail protein tail 1 17471 19381
YP_008767411.1 NC_022758_p46 DNA-binding protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 35157 35561
YP_008767384.1 NC_022758_p19 hypothetical protein singleton unknown function unknown function 1 19381 19521
YP_008767387.1 NC_022758_p22 hypothetical protein phrog_134 unknown function unknown function 1 20979 21143
YP_008767395.1 NC_022758_p30 hypothetical protein phrog_5192 unknown function unknown function -1 26733 26918
YP_008767370.1 NC_022758_p5 major head protein phrog_10 major head protein head and packaging 1 4056 5219
YP_008767399.1 NC_022758_p34 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 28249 28692
YP_008767369.1 NC_022758_p4 scaffold protein phrog_94 head maturation protease head and packaging 1 3271 4044
YP_008767417.1 NC_022758_p52 hypothetical protein phrog_1034 unknown function unknown function 1 37004 37312
YP_008767368.1 NC_022758_p3 portal protein phrog_12 portal protein head and packaging 1 2049 3287
YP_008767398.1 NC_022758_p33 regulatory protein phrog_3 transcriptional repressor transcription regulation 1 28004 28225
YP_008767375.1 NC_022758_p10 tail protein phrog_88 major tail protein tail 1 6739 7380
YP_008767403.1 NC_022758_p38 hypothetical protein phrog_640 unknown function unknown function 1 29738 29953
YP_008767374.1 NC_022758_p9 hypothetical protein phrog_78 tail terminator connector 1 6309 6704
YP_008767410.1 NC_022758_p45 hypothetical protein phrog_299 unknown function unknown function 1 34972 35157
YP_008767424.1 NC_022758_p59 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 41818 42108
YP_008767404.1 NC_022758_p39 DNA-binding protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 29978 30241
YP_008767397.1 NC_022758_p32 helix-turn-helix domain protein phrog_4 transcriptional repressor transcription regulation -1 27073 27843
YP_008767409.1 NC_022758_p44 DNA-directed DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 32998 34959
YP_008767380.1 NC_022758_p15 tail tape measure protein phrog_33 distal tail protein Dit tail 1 14749 15573
YP_008767385.1 NC_022758_p20 hypothetical protein phrog_257 minor tail protein tail 1 19509 20597
YP_008767423.1 NC_022758_p58 hypothetical protein phrog_256 DNA helicase DNA, RNA and nucleotide metabolism 1 39030 41477
YP_008767377.1 NC_022758_p12 hypothetical protein phrog_187 head-tail adaptor connector 1 7985 8326
YP_008767381.1 NC_022758_p16 hypothetical protein phrog_326 tail protein with endopeptidase domain other 1 15582 17165
YP_008767372.1 NC_022758_p7 hypothetical protein phrog_25 head closure Hc1 connector 1 5578 5910
YP_008767367.1 NC_022758_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 353 2044
YP_008767396.1 NC_022758_p31 hypothetical protein phrog_6385 unknown function unknown function -1 26915 27061
YP_008767421.1 NC_022758_p56 integrase regulator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 38322 38474
YP_008767402.1 NC_022758_p37 hypothetical protein phrog_750 unknown function unknown function -1 29318 29683
YP_008767366.1 NC_022758_p1 terminase-small subunit phrog_361 terminase small subunit head and packaging 1 40 363
YP_008767390.1 NC_022758_p25 N-acetylmuramoyl-L-alanine amidase phrog_489 endolysin lysis 1 21937 23391
YP_008767407.1 NC_022758_p42 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 31190 32356
YP_008767388.1 NC_022758_p23 hypothetical protein phrog_276 unknown function unknown function 1 21189 21488
YP_008767414.1 NC_022758_p49 hypothetical protein phrog_1241 unknown function unknown function 1 36074 36280
YP_008767392.1 NC_022758_p27 integrase phrog_1 integrase integration and excision -1 24236 25441
YP_008767393.1 NC_022758_p28 hypothetical protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 25652 26356
YP_008767376.1 NC_022758_p11 hypothetical protein phrog_341 major tail protein tail 1 7472 7927
YP_008767427.1 NC_022758_p62 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44063 44374
YP_008767400.1 NC_022758_p35 hypothetical protein phrog_2366 unknown function unknown function -1 28839 29048
YP_008767386.1 NC_022758_p21 hypothetical protein phrog_300 tail fiber protein tail 1 20597 20986
YP_008767408.1 NC_022758_p43 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32382 32939
YP_008767371.1 NC_022758_p6 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5288 5566
YP_008767405.1 NC_022758_p40 transcriptional regulator phrog_633 transcriptional regulator transcription regulation 1 30493 30816
YP_008767413.1 NC_022758_p48 hypothetical protein phrog_258 virulence associated other 1 35818 36060
YP_008767420.1 NC_022758_p55 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 38119 38325
YP_008767406.1 NC_022758_p41 hypothetical protein phrog_408 unknown function unknown function 1 30831 31193
YP_008767389.1 NC_022758_p24 holin phrog_263 holin lysis 1 21624 21926
YP_008767426.1 NC_022758_p61 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 43469 43906
YP_008767422.1 NC_022758_p57 hypothetical protein phrog_386 unknown function unknown function 1 38542 38742
YP_008767418.1 NC_022758_p53 hypothetical protein phrog_266 unknown function unknown function 1 37305 37553
YP_008767378.1 NC_022758_p13 hypothetical protein phrog_567 unknown function unknown function 1 8377 8535
YP_008767412.1 NC_022758_p47 hypothetical protein phrog_236 nucleotide kinase other 1 35558 35812
YP_008767425.1 NC_022758_p60 SNF2 domain protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 42098 43456
YP_008767379.1 NC_022758_p14 tail length tape measure protein phrog_167 tail length tape measure protein tail 1 8549 14749
YP_008767419.1 NC_022758_p54 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 37546 38082
YP_008767382.1 NC_022758_p17 hypothetical protein phrog_574 unknown function unknown function 1 17165 17455
YP_008767394.1 NC_022758_p29 hypothetical protein phrog_1176 unknown function unknown function -1 26496 26663
YP_008767373.1 NC_022758_p8 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 5907 6308
YP_008767415.1 NC_022758_p50 hypothetical protein phrog_467 unknown function unknown function 1 36283 36663
YP_008767391.1 NC_022758_p26 hypothetical protein singleton unknown function unknown function 1 23804 24049