| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022758 |
Definition |
Staphylococcus phage YMC/09/04/R1988, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Triavirus; unclassified Triavirus. |
DB of origin |
REFSEQ |
Length |
44459 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
33.37 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008767401.1 | NC_022758_p36 | hypothetical protein | phrog_643 | transcriptional regulator | transcription regulation | 1 | 29104 | 29349 |
| YP_008767416.1 | NC_022758_p51 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 36660 | 37007 |
| YP_008767383.1 | NC_022758_p18 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 17471 | 19381 |
| YP_008767411.1 | NC_022758_p46 | DNA-binding protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 35157 | 35561 |
| YP_008767384.1 | NC_022758_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19381 | 19521 |
| YP_008767387.1 | NC_022758_p22 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 20979 | 21143 |
| YP_008767395.1 | NC_022758_p30 | hypothetical protein | phrog_5192 | unknown function | unknown function | -1 | 26733 | 26918 |
| YP_008767370.1 | NC_022758_p5 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 4056 | 5219 |
| YP_008767399.1 | NC_022758_p34 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 28249 | 28692 |
| YP_008767369.1 | NC_022758_p4 | scaffold protein | phrog_94 | head maturation protease | head and packaging | 1 | 3271 | 4044 |
| YP_008767417.1 | NC_022758_p52 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 37004 | 37312 |
| YP_008767368.1 | NC_022758_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2049 | 3287 |
| YP_008767398.1 | NC_022758_p33 | regulatory protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 28004 | 28225 |
| YP_008767375.1 | NC_022758_p10 | tail protein | phrog_88 | major tail protein | tail | 1 | 6739 | 7380 |
| YP_008767403.1 | NC_022758_p38 | hypothetical protein | phrog_640 | unknown function | unknown function | 1 | 29738 | 29953 |
| YP_008767374.1 | NC_022758_p9 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6309 | 6704 |
| YP_008767410.1 | NC_022758_p45 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 34972 | 35157 |
| YP_008767424.1 | NC_022758_p59 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41818 | 42108 |
| YP_008767404.1 | NC_022758_p39 | DNA-binding protein | phrog_534 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29978 | 30241 |
| YP_008767397.1 | NC_022758_p32 | helix-turn-helix domain protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 27073 | 27843 |
| YP_008767409.1 | NC_022758_p44 | DNA-directed DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 32998 | 34959 |
| YP_008767380.1 | NC_022758_p15 | tail tape measure protein | phrog_33 | distal tail protein Dit | tail | 1 | 14749 | 15573 |
| YP_008767385.1 | NC_022758_p20 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 19509 | 20597 |
| YP_008767423.1 | NC_022758_p58 | hypothetical protein | phrog_256 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 39030 | 41477 |
| YP_008767377.1 | NC_022758_p12 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 7985 | 8326 |
| YP_008767381.1 | NC_022758_p16 | hypothetical protein | phrog_326 | tail protein with endopeptidase domain | other | 1 | 15582 | 17165 |
| YP_008767372.1 | NC_022758_p7 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 5578 | 5910 |
| YP_008767367.1 | NC_022758_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 353 | 2044 |
| YP_008767396.1 | NC_022758_p31 | hypothetical protein | phrog_6385 | unknown function | unknown function | -1 | 26915 | 27061 |
| YP_008767421.1 | NC_022758_p56 | integrase regulator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 38322 | 38474 |
| YP_008767402.1 | NC_022758_p37 | hypothetical protein | phrog_750 | unknown function | unknown function | -1 | 29318 | 29683 |
| YP_008767366.1 | NC_022758_p1 | terminase-small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 40 | 363 |
| YP_008767390.1 | NC_022758_p25 | N-acetylmuramoyl-L-alanine amidase | phrog_489 | endolysin | lysis | 1 | 21937 | 23391 |
| YP_008767407.1 | NC_022758_p42 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 31190 | 32356 |
| YP_008767388.1 | NC_022758_p23 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 21189 | 21488 |
| YP_008767414.1 | NC_022758_p49 | hypothetical protein | phrog_1241 | unknown function | unknown function | 1 | 36074 | 36280 |
| YP_008767392.1 | NC_022758_p27 | integrase | phrog_1 | integrase | integration and excision | -1 | 24236 | 25441 |
| YP_008767393.1 | NC_022758_p28 | hypothetical protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 25652 | 26356 |
| YP_008767376.1 | NC_022758_p11 | hypothetical protein | phrog_341 | major tail protein | tail | 1 | 7472 | 7927 |
| YP_008767427.1 | NC_022758_p62 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44063 | 44374 |
| YP_008767400.1 | NC_022758_p35 | hypothetical protein | phrog_2366 | unknown function | unknown function | -1 | 28839 | 29048 |
| YP_008767386.1 | NC_022758_p21 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 20597 | 20986 |
| YP_008767408.1 | NC_022758_p43 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32382 | 32939 |
| YP_008767371.1 | NC_022758_p6 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5288 | 5566 |
| YP_008767405.1 | NC_022758_p40 | transcriptional regulator | phrog_633 | transcriptional regulator | transcription regulation | 1 | 30493 | 30816 |
| YP_008767413.1 | NC_022758_p48 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 35818 | 36060 |
| YP_008767420.1 | NC_022758_p55 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 38119 | 38325 |
| YP_008767406.1 | NC_022758_p41 | hypothetical protein | phrog_408 | unknown function | unknown function | 1 | 30831 | 31193 |
| YP_008767389.1 | NC_022758_p24 | holin | phrog_263 | holin | lysis | 1 | 21624 | 21926 |
| YP_008767426.1 | NC_022758_p61 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 43469 | 43906 |
| YP_008767422.1 | NC_022758_p57 | hypothetical protein | phrog_386 | unknown function | unknown function | 1 | 38542 | 38742 |
| YP_008767418.1 | NC_022758_p53 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 37305 | 37553 |
| YP_008767378.1 | NC_022758_p13 | hypothetical protein | phrog_567 | unknown function | unknown function | 1 | 8377 | 8535 |
| YP_008767412.1 | NC_022758_p47 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 35558 | 35812 |
| YP_008767425.1 | NC_022758_p60 | SNF2 domain protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42098 | 43456 |
| YP_008767379.1 | NC_022758_p14 | tail length tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 8549 | 14749 |
| YP_008767419.1 | NC_022758_p54 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 37546 | 38082 |
| YP_008767382.1 | NC_022758_p17 | hypothetical protein | phrog_574 | unknown function | unknown function | 1 | 17165 | 17455 |
| YP_008767394.1 | NC_022758_p29 | hypothetical protein | phrog_1176 | unknown function | unknown function | -1 | 26496 | 26663 |
| YP_008767373.1 | NC_022758_p8 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5907 | 6308 |
| YP_008767415.1 | NC_022758_p50 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 36283 | 36663 |
| YP_008767391.1 | NC_022758_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23804 | 24049 |