| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022775 |
Definition |
Lactobacillus phage phiJB, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
36969 |
Host Name |
Lactobacillus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
47.7 |
Number of singletons |
8 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008772044.1 | NC_022775_p31 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 19941 | 21254 |
| YP_008772026.1 | NC_022775_p13 | hypothetical protein | phrog_888 | unknown function | unknown function | -1 | 8832 | 9209 |
| YP_008772047.1 | NC_022775_p34 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 23975 | 24511 |
| YP_008772042.1 | NC_022775_p29 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 18519 | 19013 |
| YP_008772056.1 | NC_022775_p43 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 28068 | 28670 |
| YP_008772025.1 | NC_022775_p12 | integrase | phrog_1 | integrase | integration and excision | -1 | 7713 | 8819 |
| YP_008772053.1 | NC_022775_p40 | hypothetical protein | phrog_913 | minor head protein | head and packaging | 1 | 26684 | 27097 |
| YP_008772049.1 | NC_022775_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25376 | 25591 |
| YP_008772040.1 | NC_022775_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18195 | 18356 |
| YP_008772037.1 | NC_022775_p24 | complement component C9 precursor | singleton | unknown function | unknown function | 1 | 17075 | 17254 |
| YP_008772055.1 | NC_022775_p42 | hypothetical protein | phrog_21296 | unknown function | unknown function | 1 | 27650 | 28093 |
| YP_008772036.1 | NC_022775_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16847 | 17071 |
| YP_008772030.1 | NC_022775_p17 | hypothetical protein | phrog_7634 | unknown function | unknown function | 1 | 11561 | 11848 |
| YP_008772027.1 | NC_022775_p14 | transcriptional regulators | phrog_4 | transcriptional repressor | transcription regulation | -1 | 9220 | 9885 |
| YP_008772021.1 | NC_022775_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6126 | 6734 |
| YP_008772039.1 | NC_022775_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17579 | 17842 |
| YP_008772052.1 | NC_022775_p39 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 26353 | 26694 |
| YP_008772045.1 | NC_022775_p32 | minor structural protein | phrog_533 | portal protein | head and packaging | 1 | 21265 | 22782 |
| YP_008772046.1 | NC_022775_p33 | hypothetical protein | phrog_581 | minor head protein | head and packaging | 1 | 22785 | 23912 |
| YP_008772054.1 | NC_022775_p41 | main tail protein | phrog_820 | major tail protein | tail | 1 | 27102 | 27593 |
| YP_008772048.1 | NC_022775_p35 | major capsid protein | phrog_422 | major head protein | head and packaging | 1 | 24516 | 25376 |
| YP_008772024.1 | NC_022775_p11 | hypothetical protein | phrog_16410 | unknown function | unknown function | 1 | 7194 | 7523 |
| YP_008772050.1 | NC_022775_p37 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 25569 | 26000 |
| YP_008772031.1 | NC_022775_p18 | type III restriction protein res subunit | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 11812 | 13209 |
| YP_008772038.1 | NC_022775_p25 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17257 | 17589 |
| YP_008772028.1 | NC_022775_p15 | cro-like transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 10042 | 10236 |
| YP_008772041.1 | NC_022775_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18353 | 18514 |
| YP_008772035.1 | NC_022775_p22 | hypothetical protein | phrog_1313 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 15277 | 16593 |
| YP_008772017.1 | NC_022775_p4 | hypothetical protein | phrog_4325 | holin | lysis | 1 | 4085 | 4507 |
| YP_008772057.1 | NC_022775_p44 | hypothetical protein | phrog_167 | tail length tape measure protein | tail | 1 | 29120 | 32659 |
| YP_008772019.1 | NC_022775_p6 | holin protein | phrog_2609 | holin | lysis | 1 | 4817 | 5140 |
| YP_008772015.1 | NC_022775_p2 | hypothetical protein | phrog_14733 | unknown function | unknown function | 1 | 3504 | 3950 |
| YP_008772022.1 | NC_022775_p9 | hypothetical protein | phrog_2277 | unknown function | unknown function | 1 | 6734 | 6910 |
| YP_008772023.1 | NC_022775_p10 | cytochrome c family protein | singleton | unknown function | unknown function | 1 | 6907 | 7170 |
| YP_008772058.1 | NC_022775_p45 | minor structural protein | phrog_202 | distal tail protein Dit | tail | 1 | 32669 | 34558 |
| YP_008772051.1 | NC_022775_p38 | hypothetical protein | phrog_793 | head-tail adaptor | connector | 1 | 25997 | 26353 |
| YP_008772018.1 | NC_022775_p5 | hypothetical protein | phrog_3671 | unknown function | unknown function | 1 | 4570 | 4839 |
| YP_008772033.1 | NC_022775_p20 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 13918 | 14487 |
| YP_008772029.1 | NC_022775_p16 | AntA/AntB antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 10443 | 11192 |
| YP_008772014.1 | NC_022775_p1 | minor structural protein | phrog_35520 | tail protein | tail | 1 | 1 | 3501 |
| YP_008772034.1 | NC_022775_p21 | bifunctional DNA primase/polymerase | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 14499 | 15284 |
| YP_008772043.1 | NC_022775_p30 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 19535 | 19963 |
| YP_008772059.1 | NC_022775_p46 | minor structural protein | phrog_4798 | tail protein | tail | 1 | 34558 | 36954 |
| YP_008772020.1 | NC_022775_p7 | muramidase | phrog_291 | endolysin | lysis | 1 | 5130 | 6014 |
| YP_008772032.1 | NC_022775_p19 | phage-associated ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 13209 | 13901 |
| YP_008772016.1 | NC_022775_p3 | hypothetical protein | phrog_9321 | unknown function | unknown function | 1 | 3961 | 4125 |