Genomic map of Staphylococcus phage phiRS7 (NC_022914)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022914
Definition
Staphylococcus phage phiRS7, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
43394
Host Name
Staphylococcus saprophyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
34.26
Number of singletons
15
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008853730.1 NC_022914_p7 hypothetical protein phrog_933 unknown function unknown function 1 5574 5741
YP_008853769.1 NC_022914_p46 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37058 37459
YP_008853762.1 NC_022914_p39 ssDNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33165 33605
YP_008853750.1 NC_022914_p27 hypothetical protein singleton unknown function unknown function 1 25086 25277
YP_008853764.1 NC_022914_p41 DnaD and phage-associated domain protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 34284 35021
YP_008853756.1 NC_022914_p33 pathogenicity island protein phrog_1733 unknown function unknown function 1 29076 29912
YP_008853746.1 NC_022914_p23 hypothetical protein singleton unknown function unknown function 1 21563 22003
YP_008853758.1 NC_022914_p35 hypothetical protein phrog_16447 unknown function unknown function -1 31230 31697
YP_008853755.1 NC_022914_p32 transcription regulator phrog_3 transcriptional repressor transcription regulation 1 28743 28997
YP_008853752.1 NC_022914_p29 integrase phrog_1 integrase integration and excision -1 26042 27112
YP_008853731.1 NC_022914_p8 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5742 6080
YP_008853780.1 NC_022914_p57 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 41201 41419
YP_008853774.1 NC_022914_p51 hypothetical protein phrog_467 unknown function unknown function 1 38995 39408
YP_008853729.1 NC_022914_p6 capsid protein phrog_10 major head protein head and packaging 1 4234 5559
YP_008853744.1 NC_022914_p21 hypothetical protein phrog_31273 unknown function unknown function 1 21039 21191
YP_008853776.1 NC_022914_p53 hypothetical protein singleton unknown function unknown function 1 39520 39915
YP_008853737.1 NC_022914_p14 tail length tape measure protein phrog_167 tail length tape measure protein tail 1 8603 14035
YP_008853779.1 NC_022914_p56 hypothetical protein phrog_715 MazG-like pyrophosphatase other 1 40772 41158
YP_008853775.1 NC_022914_p52 hypothetical protein singleton unknown function unknown function 1 39409 39513
YP_008853740.1 NC_022914_p17 tail fiber protein singleton unknown function unknown function 1 15187 17286
YP_008853741.1 NC_022914_p18 O-antigen ligase singleton unknown function unknown function -1 17297 18316
YP_008853760.1 NC_022914_p37 hypothetical protein phrog_946 unknown function unknown function 1 32163 32552
YP_008853785.1 NC_022914_p62 HNH endonuclease family protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42917 43246
YP_008853726.1 NC_022914_p3 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2225 2401
YP_008853766.1 NC_022914_p43 helicase DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 35374 36615
YP_008853757.1 NC_022914_p34 hypothetical protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 29915 30682
YP_008853734.1 NC_022914_p11 hypothetical protein phrog_78 tail terminator connector 1 6806 7195
YP_008853773.1 NC_022914_p50 hypothetical protein phrog_3683 unknown function unknown function 1 38802 39005
YP_008853753.1 NC_022914_p30 lipoprotein singleton unknown function unknown function -1 27166 27858
YP_008853761.1 NC_022914_p38 topoisomerase phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32545 33165
YP_008853738.1 NC_022914_p15 hypothetical protein phrog_33 distal tail protein Dit tail 1 14078 14881
YP_008853783.1 NC_022914_p60 hypothetical protein singleton unknown function unknown function 1 41750 41977
YP_008853733.1 NC_022914_p10 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 6370 6789
YP_008853742.1 NC_022914_p19 hypothetical protein singleton unknown function unknown function 1 18315 18479
YP_008853767.1 NC_022914_p44 hypothetical protein phrog_3161 unknown function unknown function 1 36612 36824
YP_008853724.1 NC_022914_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 1 471
YP_008853770.1 NC_022914_p47 hypothetical protein singleton unknown function unknown function 1 37456 37668
YP_008853771.1 NC_022914_p48 hypothetical protein singleton unknown function unknown function 1 37912 38073
YP_008853759.1 NC_022914_p36 hypothetical protein phrog_823 unknown function unknown function 1 31761 32045
YP_008853739.1 NC_022914_p16 hypothetical protein singleton unknown function unknown function 1 14835 15185
YP_008853778.1 NC_022914_p55 DNA binding protein phrog_1305 DNA binding protein DNA, RNA and nucleotide metabolism -1 40081 40791
YP_008853732.1 NC_022914_p9 phage head-tail adaptor phrog_25 head closure Hc1 connector 1 6050 6373
YP_008853736.1 NC_022914_p13 hypothetical protein phrog_27947 unknown function unknown function 1 7866 8585
YP_008853749.1 NC_022914_p26 hypothetical protein phrog_3446 unknown function unknown function 1 24425 24985
YP_008853772.1 NC_022914_p49 hypothetical protein phrog_1689 nucleotide kinase other 1 38074 38802
YP_008853765.1 NC_022914_p42 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 35025 35387
YP_008853782.1 NC_022914_p59 hypothetical protein phrog_386 unknown function unknown function 1 41568 41735
YP_008853743.1 NC_022914_p20 minor structural protein phrog_5555 tail protein tail 1 18581 21052
YP_008853747.1 NC_022914_p24 holin phrog_962 holin lysis 1 21984 22526
YP_008853784.1 NC_022914_p61 hypothetical protein phrog_1058 unknown function unknown function 1 41992 42387
YP_008853751.1 NC_022914_p28 YolD-like protein phrog_3352 unknown function unknown function 1 25287 25697
YP_008853728.1 NC_022914_p5 prohead protease phrog_80 head maturation protease head and packaging 1 3626 4183
YP_008853777.1 NC_022914_p54 hypothetical protein singleton unknown function unknown function 1 39908 40099
YP_008853754.1 NC_022914_p31 repressor protein phrog_4 transcriptional repressor transcription regulation -1 27912 28592
YP_008853727.1 NC_022914_p4 portal protein phrog_12 portal protein head and packaging 1 2401 3645
YP_008853763.1 NC_022914_p40 hypothetical protein phrog_398 unknown function unknown function 1 33619 34284
YP_008853748.1 NC_022914_p25 CHAP domain protein phrog_635 endolysin lysis 1 22516 23940
YP_008853745.1 NC_022914_p22 hypothetical protein singleton unknown function unknown function 1 21226 21552
YP_008853725.1 NC_022914_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 458 2212
YP_008853781.1 NC_022914_p58 RinB singleton RinB-like transcriptional activator transcription regulation 1 41437 41568
YP_008853768.1 NC_022914_p45 phi-ETA orf24 like protein phrog_433 unknown function unknown function 1 36811 37047
YP_008853735.1 NC_022914_p12 major tail protein phrog_88 major tail protein tail 1 7199 7792