| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022914 |
Definition |
Staphylococcus phage phiRS7, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
43394 |
Host Name |
Staphylococcus saprophyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
34.26 |
Number of singletons |
15 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008853730.1 | NC_022914_p7 | hypothetical protein | phrog_933 | unknown function | unknown function | 1 | 5574 | 5741 |
| YP_008853769.1 | NC_022914_p46 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37058 | 37459 |
| YP_008853762.1 | NC_022914_p39 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33165 | 33605 |
| YP_008853750.1 | NC_022914_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25086 | 25277 |
| YP_008853764.1 | NC_022914_p41 | DnaD and phage-associated domain protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 34284 | 35021 |
| YP_008853756.1 | NC_022914_p33 | pathogenicity island protein | phrog_1733 | unknown function | unknown function | 1 | 29076 | 29912 |
| YP_008853746.1 | NC_022914_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21563 | 22003 |
| YP_008853758.1 | NC_022914_p35 | hypothetical protein | phrog_16447 | unknown function | unknown function | -1 | 31230 | 31697 |
| YP_008853755.1 | NC_022914_p32 | transcription regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 28743 | 28997 |
| YP_008853752.1 | NC_022914_p29 | integrase | phrog_1 | integrase | integration and excision | -1 | 26042 | 27112 |
| YP_008853731.1 | NC_022914_p8 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5742 | 6080 |
| YP_008853780.1 | NC_022914_p57 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 41201 | 41419 |
| YP_008853774.1 | NC_022914_p51 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 38995 | 39408 |
| YP_008853729.1 | NC_022914_p6 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4234 | 5559 |
| YP_008853744.1 | NC_022914_p21 | hypothetical protein | phrog_31273 | unknown function | unknown function | 1 | 21039 | 21191 |
| YP_008853776.1 | NC_022914_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39520 | 39915 |
| YP_008853737.1 | NC_022914_p14 | tail length tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 8603 | 14035 |
| YP_008853779.1 | NC_022914_p56 | hypothetical protein | phrog_715 | MazG-like pyrophosphatase | other | 1 | 40772 | 41158 |
| YP_008853775.1 | NC_022914_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39409 | 39513 |
| YP_008853740.1 | NC_022914_p17 | tail fiber protein | singleton | unknown function | unknown function | 1 | 15187 | 17286 |
| YP_008853741.1 | NC_022914_p18 | O-antigen ligase | singleton | unknown function | unknown function | -1 | 17297 | 18316 |
| YP_008853760.1 | NC_022914_p37 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 32163 | 32552 |
| YP_008853785.1 | NC_022914_p62 | HNH endonuclease family protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42917 | 43246 |
| YP_008853726.1 | NC_022914_p3 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2225 | 2401 |
| YP_008853766.1 | NC_022914_p43 | helicase DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 35374 | 36615 |
| YP_008853757.1 | NC_022914_p34 | hypothetical protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 29915 | 30682 |
| YP_008853734.1 | NC_022914_p11 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6806 | 7195 |
| YP_008853773.1 | NC_022914_p50 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 38802 | 39005 |
| YP_008853753.1 | NC_022914_p30 | lipoprotein | singleton | unknown function | unknown function | -1 | 27166 | 27858 |
| YP_008853761.1 | NC_022914_p38 | topoisomerase | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32545 | 33165 |
| YP_008853738.1 | NC_022914_p15 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 14078 | 14881 |
| YP_008853783.1 | NC_022914_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41750 | 41977 |
| YP_008853733.1 | NC_022914_p10 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6370 | 6789 |
| YP_008853742.1 | NC_022914_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18315 | 18479 |
| YP_008853767.1 | NC_022914_p44 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 36612 | 36824 |
| YP_008853724.1 | NC_022914_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1 | 471 |
| YP_008853770.1 | NC_022914_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37456 | 37668 |
| YP_008853771.1 | NC_022914_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37912 | 38073 |
| YP_008853759.1 | NC_022914_p36 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 31761 | 32045 |
| YP_008853739.1 | NC_022914_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14835 | 15185 |
| YP_008853778.1 | NC_022914_p55 | DNA binding protein | phrog_1305 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 40081 | 40791 |
| YP_008853732.1 | NC_022914_p9 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6050 | 6373 |
| YP_008853736.1 | NC_022914_p13 | hypothetical protein | phrog_27947 | unknown function | unknown function | 1 | 7866 | 8585 |
| YP_008853749.1 | NC_022914_p26 | hypothetical protein | phrog_3446 | unknown function | unknown function | 1 | 24425 | 24985 |
| YP_008853772.1 | NC_022914_p49 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 38074 | 38802 |
| YP_008853765.1 | NC_022914_p42 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 35025 | 35387 |
| YP_008853782.1 | NC_022914_p59 | hypothetical protein | phrog_386 | unknown function | unknown function | 1 | 41568 | 41735 |
| YP_008853743.1 | NC_022914_p20 | minor structural protein | phrog_5555 | tail protein | tail | 1 | 18581 | 21052 |
| YP_008853747.1 | NC_022914_p24 | holin | phrog_962 | holin | lysis | 1 | 21984 | 22526 |
| YP_008853784.1 | NC_022914_p61 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 41992 | 42387 |
| YP_008853751.1 | NC_022914_p28 | YolD-like protein | phrog_3352 | unknown function | unknown function | 1 | 25287 | 25697 |
| YP_008853728.1 | NC_022914_p5 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 3626 | 4183 |
| YP_008853777.1 | NC_022914_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39908 | 40099 |
| YP_008853754.1 | NC_022914_p31 | repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 27912 | 28592 |
| YP_008853727.1 | NC_022914_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2401 | 3645 |
| YP_008853763.1 | NC_022914_p40 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 33619 | 34284 |
| YP_008853748.1 | NC_022914_p25 | CHAP domain protein | phrog_635 | endolysin | lysis | 1 | 22516 | 23940 |
| YP_008853745.1 | NC_022914_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21226 | 21552 |
| YP_008853725.1 | NC_022914_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 458 | 2212 |
| YP_008853781.1 | NC_022914_p58 | RinB | singleton | RinB-like transcriptional activator | transcription regulation | 1 | 41437 | 41568 |
| YP_008853768.1 | NC_022914_p45 | phi-ETA orf24 like protein | phrog_433 | unknown function | unknown function | 1 | 36811 | 37047 |
| YP_008853735.1 | NC_022914_p12 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7199 | 7792 |