| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022915 |
Definition |
Ralstonia phage RSK1 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
40471 |
Host Name |
Ralstonia solanacearum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
59.59 |
Number of singletons |
28 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008853829.1 | NC_022915_p44 | phage recombination protein | phrog_2449 | single strand annealing protein | DNA, RNA and nucleotide metabolism | -1 | 34346 | 35335 |
| YP_008853827.1 | NC_022915_p42 | hypothetical protein | phrog_1273 | unknown function | unknown function | -1 | 32186 | 32539 |
| YP_008853816.1 | NC_022915_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27528 | 27989 |
| YP_008853797.1 | NC_022915_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11177 | 11515 |
| YP_008853836.1 | NC_022915_p51 | endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38505 | 39005 |
| YP_008853795.1 | NC_022915_p10 | packaged DNA protein | phrog_578 | head closure Hc3 | connector | 1 | 8735 | 10198 |
| YP_008853802.1 | NC_022915_p17 | bacteriolytic protein | phrog_19253 | unknown function | unknown function | 1 | 18351 | 20435 |
| YP_008853824.1 | NC_022915_p39 | hypothetical protein | phrog_37642 | unknown function | unknown function | -1 | 31316 | 31624 |
| YP_008853821.1 | NC_022915_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29954 | 30493 |
| YP_008853823.1 | NC_022915_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31048 | 31254 |
| YP_008853807.1 | NC_022915_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22306 | 22773 |
| YP_008853811.1 | NC_022915_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24799 | 24909 |
| YP_008853814.1 | NC_022915_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26582 | 27319 |
| YP_008853794.1 | NC_022915_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8395 | 8733 |
| YP_008853813.1 | NC_022915_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25696 | 26481 |
| YP_008853825.1 | NC_022915_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31664 | 31867 |
| YP_008853818.1 | NC_022915_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28516 | 28734 |
| YP_008853800.1 | NC_022915_p15 | DNA transfer protein | phrog_917 | released from the phage upon host infection | other | 1 | 12995 | 14503 |
| YP_008853822.1 | NC_022915_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30701 | 31051 |
| YP_008853790.1 | NC_022915_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6261 | 6968 |
| YP_008853812.1 | NC_022915_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24945 | 25559 |
| YP_008853808.1 | NC_022915_p23 | hypothetical protein | phrog_36911 | unknown function | unknown function | 1 | 22786 | 24225 |
| YP_008853799.1 | NC_022915_p14 | DNA transfer protein | phrog_598 | DNA ejection | DNA, RNA and nucleotide metabolism | 1 | 12177 | 12986 |
| YP_008853820.1 | NC_022915_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29325 | 29957 |
| YP_008853792.1 | NC_022915_p7 | head DNA stabilization protein | phrog_637 | head-tail adaptor Ad3 | connector | 1 | 7258 | 7752 |
| YP_008853793.1 | NC_022915_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7762 | 8391 |
| YP_008853789.1 | NC_022915_p4 | capsid protein | phrog_283 | major head protein | head and packaging | 1 | 5011 | 6264 |
| YP_008853796.1 | NC_022915_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10201 | 11172 |
| YP_008853828.1 | NC_022915_p43 | phage-type endonuclease | phrog_7655 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32558 | 34336 |
| YP_008853826.1 | NC_022915_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31883 | 32053 |
| YP_008853810.1 | NC_022915_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24667 | 24795 |
| YP_008853817.1 | NC_022915_p32 | HNH endonuclease family protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27986 | 28519 |
| YP_008853832.1 | NC_022915_p47 | phage repressor | singleton | unknown function | unknown function | -1 | 35794 | 36153 |
| YP_008853815.1 | NC_022915_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27316 | 27531 |
| YP_008853819.1 | NC_022915_p34 | pentapeptide repeat protein | phrog_31265 | unknown function | unknown function | -1 | 28759 | 29262 |
| YP_008853838.1 | NC_022915_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39330 | 39857 |
| YP_008853791.1 | NC_022915_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7016 | 7255 |
| YP_008853834.1 | NC_022915_p49 | replication protein | phrog_16167 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 36731 | 37666 |
| YP_008853831.1 | NC_022915_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35533 | 35709 |
| YP_008853803.1 | NC_022915_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20441 | 20656 |
| YP_008853839.1 | NC_022915_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39911 | 40114 |
| YP_008853804.1 | NC_022915_p19 | phage-related membrane protein | phrog_1528 | holin | lysis | 1 | 20653 | 20961 |
| YP_008853801.1 | NC_022915_p16 | transglycosylase | phrog_6704 | unknown function | unknown function | 1 | 14505 | 18347 |
| YP_008853786.1 | NC_022915_p1 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 292 | 1779 |
| YP_008853798.1 | NC_022915_p13 | tail fiber protein | phrog_12032 | short tail fiber protein | tail | 1 | 11512 | 12180 |
| YP_008853805.1 | NC_022915_p20 | lytic transglycosylase catalytic | phrog_669 | endolysin | lysis | 1 | 20958 | 21593 |
| YP_008853788.1 | NC_022915_p3 | hypothetical protein | phrog_648 | head scaffolding protein | head and packaging | 1 | 4021 | 4962 |
| YP_008853806.1 | NC_022915_p21 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | 1 | 21590 | 22117 |
| YP_008853830.1 | NC_022915_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35359 | 35523 |
| YP_008853835.1 | NC_022915_p50 | hypothetical protein | phrog_6028 | unknown function | unknown function | 1 | 37668 | 38441 |
| YP_008853837.1 | NC_022915_p52 | hypothetical protein | phrog_20616 | unknown function | unknown function | 1 | 39061 | 39294 |
| YP_008853787.1 | NC_022915_p2 | portal protein | phrog_156 | portal protein | head and packaging | 1 | 1786 | 3918 |
| YP_008853809.1 | NC_022915_p24 | polysaccharide deacetylase | phrog_24355 | polysaccharide deacetylase | moron, auxiliary metabolic gene and host takeover | 1 | 24235 | 24633 |
| YP_008853833.1 | NC_022915_p48 | predicted protein | singleton | unknown function | unknown function | -1 | 36175 | 36549 |