Genomic map of Ralstonia phage RSK1 (NC_022915)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022915
Definition
Ralstonia phage RSK1 DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
40471
Host Name
Ralstonia solanacearum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
59.59
Number of singletons
28
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008853829.1 NC_022915_p44 phage recombination protein phrog_2449 single strand annealing protein DNA, RNA and nucleotide metabolism -1 34346 35335
YP_008853827.1 NC_022915_p42 hypothetical protein phrog_1273 unknown function unknown function -1 32186 32539
YP_008853816.1 NC_022915_p31 hypothetical protein singleton unknown function unknown function -1 27528 27989
YP_008853797.1 NC_022915_p12 hypothetical protein singleton unknown function unknown function 1 11177 11515
YP_008853836.1 NC_022915_p51 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38505 39005
YP_008853795.1 NC_022915_p10 packaged DNA protein phrog_578 head closure Hc3 connector 1 8735 10198
YP_008853802.1 NC_022915_p17 bacteriolytic protein phrog_19253 unknown function unknown function 1 18351 20435
YP_008853824.1 NC_022915_p39 hypothetical protein phrog_37642 unknown function unknown function -1 31316 31624
YP_008853821.1 NC_022915_p36 hypothetical protein singleton unknown function unknown function -1 29954 30493
YP_008853823.1 NC_022915_p38 hypothetical protein singleton unknown function unknown function -1 31048 31254
YP_008853807.1 NC_022915_p22 hypothetical protein singleton unknown function unknown function 1 22306 22773
YP_008853811.1 NC_022915_p26 hypothetical protein singleton unknown function unknown function 1 24799 24909
YP_008853814.1 NC_022915_p29 hypothetical protein singleton unknown function unknown function -1 26582 27319
YP_008853794.1 NC_022915_p9 hypothetical protein singleton unknown function unknown function 1 8395 8733
YP_008853813.1 NC_022915_p28 hypothetical protein singleton unknown function unknown function -1 25696 26481
YP_008853825.1 NC_022915_p40 hypothetical protein singleton unknown function unknown function -1 31664 31867
YP_008853818.1 NC_022915_p33 hypothetical protein singleton unknown function unknown function -1 28516 28734
YP_008853800.1 NC_022915_p15 DNA transfer protein phrog_917 released from the phage upon host infection other 1 12995 14503
YP_008853822.1 NC_022915_p37 hypothetical protein singleton unknown function unknown function -1 30701 31051
YP_008853790.1 NC_022915_p5 hypothetical protein singleton unknown function unknown function 1 6261 6968
YP_008853812.1 NC_022915_p27 hypothetical protein singleton unknown function unknown function 1 24945 25559
YP_008853808.1 NC_022915_p23 hypothetical protein phrog_36911 unknown function unknown function 1 22786 24225
YP_008853799.1 NC_022915_p14 DNA transfer protein phrog_598 DNA ejection DNA, RNA and nucleotide metabolism 1 12177 12986
YP_008853820.1 NC_022915_p35 hypothetical protein singleton unknown function unknown function -1 29325 29957
YP_008853792.1 NC_022915_p7 head DNA stabilization protein phrog_637 head-tail adaptor Ad3 connector 1 7258 7752
YP_008853793.1 NC_022915_p8 hypothetical protein singleton unknown function unknown function 1 7762 8391
YP_008853789.1 NC_022915_p4 capsid protein phrog_283 major head protein head and packaging 1 5011 6264
YP_008853796.1 NC_022915_p11 hypothetical protein singleton unknown function unknown function 1 10201 11172
YP_008853828.1 NC_022915_p43 phage-type endonuclease phrog_7655 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism -1 32558 34336
YP_008853826.1 NC_022915_p41 hypothetical protein singleton unknown function unknown function -1 31883 32053
YP_008853810.1 NC_022915_p25 hypothetical protein singleton unknown function unknown function 1 24667 24795
YP_008853817.1 NC_022915_p32 HNH endonuclease family protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 27986 28519
YP_008853832.1 NC_022915_p47 phage repressor singleton unknown function unknown function -1 35794 36153
YP_008853815.1 NC_022915_p30 hypothetical protein singleton unknown function unknown function -1 27316 27531
YP_008853819.1 NC_022915_p34 pentapeptide repeat protein phrog_31265 unknown function unknown function -1 28759 29262
YP_008853838.1 NC_022915_p53 hypothetical protein singleton unknown function unknown function 1 39330 39857
YP_008853791.1 NC_022915_p6 hypothetical protein singleton unknown function unknown function 1 7016 7255
YP_008853834.1 NC_022915_p49 replication protein phrog_16167 replication initiation protein DNA, RNA and nucleotide metabolism 1 36731 37666
YP_008853831.1 NC_022915_p46 hypothetical protein singleton unknown function unknown function -1 35533 35709
YP_008853803.1 NC_022915_p18 hypothetical protein singleton unknown function unknown function 1 20441 20656
YP_008853839.1 NC_022915_p54 hypothetical protein singleton unknown function unknown function 1 39911 40114
YP_008853804.1 NC_022915_p19 phage-related membrane protein phrog_1528 holin lysis 1 20653 20961
YP_008853801.1 NC_022915_p16 transglycosylase phrog_6704 unknown function unknown function 1 14505 18347
YP_008853786.1 NC_022915_p1 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 292 1779
YP_008853798.1 NC_022915_p13 tail fiber protein phrog_12032 short tail fiber protein tail 1 11512 12180
YP_008853805.1 NC_022915_p20 lytic transglycosylase catalytic phrog_669 endolysin lysis 1 20958 21593
YP_008853788.1 NC_022915_p3 hypothetical protein phrog_648 head scaffolding protein head and packaging 1 4021 4962
YP_008853806.1 NC_022915_p21 hypothetical protein phrog_312 Rz-like spanin lysis 1 21590 22117
YP_008853830.1 NC_022915_p45 hypothetical protein singleton unknown function unknown function -1 35359 35523
YP_008853835.1 NC_022915_p50 hypothetical protein phrog_6028 unknown function unknown function 1 37668 38441
YP_008853837.1 NC_022915_p52 hypothetical protein phrog_20616 unknown function unknown function 1 39061 39294
YP_008853787.1 NC_022915_p2 portal protein phrog_156 portal protein head and packaging 1 1786 3918
YP_008853809.1 NC_022915_p24 polysaccharide deacetylase phrog_24355 polysaccharide deacetylase moron, auxiliary metabolic gene and host takeover 1 24235 24633
YP_008853833.1 NC_022915_p48 predicted protein singleton unknown function unknown function -1 36175 36549