Genomic map of Staphylococcus phage S25-4 (NC_022918)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022918
Definition
Staphylococcus phage S25-4 DNA, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Kayvirus.
DB of origin
REFSEQ
Length
132123
Host Name
Staphylococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
184
%GC
30.3
Number of singletons
0
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008853978.1 NC_022918_p30 hypothetical protein phrog_4355 unknown function unknown function -1 11908 12324
YP_008853982.1 NC_022918_p34 hypothetical protein phrog_4045 unknown function unknown function -1 13444 13986
YP_008853994.1 NC_022918_p46 hypothetical protein phrog_3319 unknown function unknown function -1 21082 21564
YP_008853988.1 NC_022918_p40 hypothetical protein phrog_3686 unknown function unknown function -1 18827 19045
YP_008854018.1 NC_022918_p70 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 34441 34671
YP_008854102.1 NC_022918_p154 structural protein with bacterial Ig-like domain group 2 phrog_341 major tail protein tail 1 116414 116926
YP_008854027.1 NC_022918_p79 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 41915 42133
YP_008854081.1 NC_022918_p133 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 97429 99348
YP_008854093.1 NC_022918_p145 hypothetical protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 107542 107847
YP_008854112.1 NC_022918_p164 hypothetical protein phrog_1113 unknown function unknown function 1 121989 122852
YP_008854106.1 NC_022918_p158 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 118275 119525
YP_008853971.1 NC_022918_p23 hypothetical protein phrog_25118 unknown function unknown function 1 9765 9953
YP_008854092.1 NC_022918_p144 hypothetical protein phrog_1054 unknown function unknown function 1 106972 107532
YP_008854111.1 NC_022918_p163 hypothetical protein phrog_2356 unknown function unknown function 1 121543 121989
YP_008854038.1 NC_022918_p90 hypothetical protein phrog_3094 unknown function unknown function 1 48316 49533
YP_008854043.1 NC_022918_p95 hypothetical protein phrog_1133 unknown function unknown function 1 53029 53985
YP_008854033.1 NC_022918_p85 hypothetical protein phrog_1321 unknown function unknown function 1 44307 44585
YP_008853962.1 NC_022918_p14 hypothetical protein phrog_3325 TreN-like membrane protein other 1 5957 6115
YP_008854000.1 NC_022918_p52 hypothetical protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover -1 23989 25107
YP_008854089.1 NC_022918_p141 hypothetical protein phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 105029 106078
YP_008854039.1 NC_022918_p91 hypothetical protein phrog_3937 unknown function unknown function 1 49609 49959
YP_008854131.1 NC_022918_p183 hypothetical protein phrog_10962 unknown function unknown function 1 130384 130737
YP_008854030.1 NC_022918_p82 hypothetical protein phrog_1481 unknown function unknown function -1 43177 43503
YP_008854080.1 NC_022918_p132 hypothetical protein phrog_2773 unknown function unknown function 1 97052 97429
YP_008854005.1 NC_022918_p57 hypothetical protein phrog_2966 unknown function unknown function -1 26661 26822
YP_008854070.1 NC_022918_p122 structural protein phrog_1394 virion structural protein head and packaging 1 81889 82410
YP_008854020.1 NC_022918_p72 hypothetical protein phrog_3310 transglycosylase other -1 35010 35702
YP_008854094.1 NC_022918_p146 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 107923 111141
YP_008854044.1 NC_022918_p96 major structural protein phrog_752 major head protein head and packaging 1 54101 55492
YP_008854058.1 NC_022918_p110 structural protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 63771 64307
YP_008854015.1 NC_022918_p67 RNase H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 33181 33606
YP_008854088.1 NC_022918_p140 hypothetical protein phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 102901 105015
YP_008854079.1 NC_022918_p131 hypothetical protein phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 96027 97052
YP_008853951.1 NC_022918_p3 hypothetical protein phrog_654 unknown function unknown function 1 1074 1379
YP_008854096.1 NC_022918_p148 hypothetical protein phrog_1069 unknown function unknown function 1 111470 111952
YP_008854124.1 NC_022918_p176 hypothetical protein phrog_4009 unknown function unknown function 1 128491 128739
YP_008854025.1 NC_022918_p77 holin phrog_962 holin lysis -1 39596 40099
YP_008853990.1 NC_022918_p42 hypothetical protein phrog_3464 nucleotidyltransferase DNA, RNA and nucleotide metabolism -1 19230 19967
YP_008854056.1 NC_022918_p108 hypothetical protein phrog_2754 virion structural protein head and packaging 1 62826 63137
YP_008854129.1 NC_022918_p181 hypothetical protein phrog_13028 unknown function unknown function 1 129840 130169
YP_008854113.1 NC_022918_p165 hypothetical protein phrog_1007 unknown function unknown function 1 123224 123955
YP_008854087.1 NC_022918_p139 hypothetical protein phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover 1 102494 102886
YP_008854048.1 NC_022918_p100 hypothetical protein phrog_1127 unknown function unknown function 1 57693 58313
YP_008854067.1 NC_022918_p119 hypothetical protein phrog_975 baseplate protein tail 1 77434 78138
YP_008853964.1 NC_022918_p16 hypothetical protein phrog_29692 unknown function unknown function 1 6705 7211
YP_008854100.1 NC_022918_p152 hypothetical protein phrog_1025 RNA polymerase sigma factor transcription regulation 1 114970 115632
YP_008854031.1 NC_022918_p83 hypothetical protein phrog_4526 unknown function unknown function -1 43536 43802
YP_008854061.1 NC_022918_p113 structural protein phrog_2677 tail protein with lysin activity tail 1 70938 71825
YP_008854097.1 NC_022918_p149 hypothetical protein phrog_2672 unknown function unknown function 1 112039 113310
YP_008854122.1 NC_022918_p174 hypothetical protein phrog_6850 unknown function unknown function 1 127539 127751
YP_008854128.1 NC_022918_p180 hypothetical protein phrog_3669 unknown function unknown function 1 129459 129827
YP_008853953.1 NC_022918_p5 hypothetical protein phrog_654 unknown function unknown function 1 1649 1939
YP_008854118.1 NC_022918_p170 hypothetical protein phrog_3157 unknown function unknown function 1 126268 126510
YP_008853983.1 NC_022918_p35 hypothetical protein phrog_1017 unknown function unknown function -1 13998 14486
YP_008854077.1 NC_022918_p129 hypothetical protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 92900 94513
YP_008854123.1 NC_022918_p175 hypothetical protein phrog_3854 ribulose-1;5-bisphosphate carboxylase/oxygenase small subunit moron, auxiliary metabolic gene and host takeover 1 127832 128476
YP_008853989.1 NC_022918_p41 hypothetical protein phrog_3950 unknown function unknown function -1 19046 19240
YP_008853952.1 NC_022918_p4 hypothetical protein phrog_13453 nuclease DNA, RNA and nucleotide metabolism 1 1364 1552
YP_008853998.1 NC_022918_p50 hypothetical protein phrog_3751 membrane protein moron, auxiliary metabolic gene and host takeover -1 22853 23131
YP_008854099.1 NC_022918_p151 hypothetical protein phrog_1089 unknown function unknown function 1 114630 114983
YP_008853977.1 NC_022918_p29 hypothetical protein phrog_11889 unknown function unknown function -1 11663 11908
YP_008854035.1 NC_022918_p87 phage terminase large subunit GpA structural protein phrog_675 terminase large subunit head and packaging 1 45007 46824
YP_008853950.1 NC_022918_p2 hypothetical protein phrog_36897 unknown function unknown function 1 851 1060
YP_008854115.1 NC_022918_p167 hypothetical protein phrog_1303 DNA binding protein DNA, RNA and nucleotide metabolism 1 124497 124940
YP_008854011.1 NC_022918_p63 RNA ligase phrog_548 RNA ligase DNA, RNA and nucleotide metabolism -1 30770 31462
YP_008854055.1 NC_022918_p107 hypothetical protein phrog_4320 unknown function unknown function 1 62562 62753
YP_008853979.1 NC_022918_p31 hypothetical protein phrog_4249 unknown function unknown function -1 12324 12515
YP_008853975.1 NC_022918_p27 hypothetical protein phrog_8073 unknown function unknown function -1 11022 11312
YP_008854103.1 NC_022918_p155 hypothetical protein phrog_1696 major tail protein tail 1 116941 117168
YP_008854086.1 NC_022918_p138 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 101869 102477
YP_008854076.1 NC_022918_p128 helicase with intein phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 89886 92888
YP_008854091.1 NC_022918_p143 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 106409 106729
YP_008853959.1 NC_022918_p11 hypothetical protein phrog_2601 unknown function unknown function 1 4374 4682
YP_008853968.1 NC_022918_p20 hypothetical protein phrog_6946 unknown function unknown function 1 8616 8780
YP_008854037.1 NC_022918_p89 hypothetical protein phrog_1116 unknown function unknown function 1 47795 48274
YP_008853973.1 NC_022918_p25 hypothetical protein phrog_3549 unknown function unknown function 1 10132 10455
YP_008853996.1 NC_022918_p48 hypothetical protein phrog_3702 unknown function unknown function -1 22156 22683
YP_008854017.1 NC_022918_p69 hypothetical protein phrog_2896 unknown function unknown function -1 33810 34451
YP_008853958.1 NC_022918_p10 hypothetical protein phrog_3077 unknown function unknown function -1 3726 4064
YP_008853980.1 NC_022918_p32 hypothetical protein phrog_3619 unknown function unknown function -1 12512 12997
YP_008854064.1 NC_022918_p116 structural protein phrog_2204 glycerophosphoryl diester phosphodiesterase other 1 73466 76012
YP_008854116.1 NC_022918_p168 hypothetical protein phrog_2726 unknown function unknown function 1 124957 125661
YP_008854109.1 NC_022918_p161 hypothetical protein phrog_1080 unknown function unknown function 1 120269 120805
YP_008854019.1 NC_022918_p71 hypothetical protein phrog_2770 unknown function unknown function -1 34674 34901
YP_008854130.1 NC_022918_p182 hypothetical protein phrog_4983 unknown function unknown function 1 130173 130367
YP_008854054.1 NC_022918_p106 hypothetical protein phrog_2701 unknown function unknown function 1 61913 62053
YP_008854085.1 NC_022918_p137 hypothetical protein phrog_1095 unknown function unknown function 1 101430 101882
YP_008854110.1 NC_022918_p162 hypothetical protein phrog_984 unknown function unknown function 1 120798 121565
YP_008854036.1 NC_022918_p88 structural protein phrog_1917 virion structural protein head and packaging 1 46838 47638
YP_008854007.1 NC_022918_p59 hypothetical protein phrog_2811 virion structural protein head and packaging -1 28952 29215
YP_008854121.1 NC_022918_p173 hypothetical protein phrog_6867 unknown function unknown function 1 127277 127525
YP_008853984.1 NC_022918_p36 hypothetical protein phrog_3857 unknown function unknown function -1 14499 14903
YP_008854127.1 NC_022918_p179 hypothetical protein phrog_3640 membrane protein moron, auxiliary metabolic gene and host takeover 1 129264 129446
YP_008854001.1 NC_022918_p53 hypothetical protein phrog_2861 unknown function unknown function -1 25258 25584
YP_008854050.1 NC_022918_p102 hypothetical protein phrog_1151 unknown function unknown function 1 59170 59385
YP_008853997.1 NC_022918_p49 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation -1 22686 22850
YP_008853987.1 NC_022918_p39 hypothetical protein phrog_2948 unknown function unknown function -1 18275 18823
YP_008854023.1 NC_022918_p75 hypothetical protein phrog_3667 unknown function unknown function -1 37688 37996
YP_008854024.1 NC_022918_p76 endolysin phrog_635 endolysin lysis -1 38109 39596
YP_008854095.1 NC_022918_p147 hypothetical protein phrog_3621 unknown function unknown function 1 111211 111453
YP_008854066.1 NC_022918_p118 structural protein phrog_1073 unknown function unknown function 1 76910 77434
YP_008854006.1 NC_022918_p58 hypothetical protein phrog_3200 unknown function unknown function -1 26822 28873
YP_008854045.1 NC_022918_p97 hypothetical protein phrog_1205 unknown function unknown function 1 55584 55880
YP_008853967.1 NC_022918_p19 hypothetical protein phrog_10435 unknown function unknown function 1 8408 8545
YP_008854002.1 NC_022918_p54 hypothetical protein phrog_2708 nucleotide kinase other -1 25577 25993
YP_008854016.1 NC_022918_p68 hypothetical protein phrog_2706 unknown function unknown function -1 33596 33787
YP_008853969.1 NC_022918_p21 hypothetical protein phrog_3480 unknown function unknown function 1 9018 9254
YP_008853972.1 NC_022918_p24 hypothetical protein phrog_3789 unknown function unknown function 1 9968 10132
YP_008854009.1 NC_022918_p61 hypothetical protein phrog_2642 unknown function unknown function -1 29412 29990
YP_008854119.1 NC_022918_p171 hypothetical protein phrog_5958 unknown function unknown function 1 126515 127072
YP_008854049.1 NC_022918_p101 hypothetical protein phrog_1000 unknown function unknown function 1 58332 59168
YP_008854084.1 NC_022918_p136 hypothetical protein phrog_1291 unknown function unknown function 1 101092 101430
YP_008854010.1 NC_022918_p62 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 29983 30573
YP_008854046.1 NC_022918_p98 hypothetical protein phrog_772 tail fiber protein tail 1 55893 56801
YP_008853949.1 NC_022918_p1 hypothetical protein phrog_4538 unknown function unknown function 1 1 326
YP_008853949.1 NC_022918_p1 hypothetical protein phrog_4538 unknown function unknown function 1 131352 132123
YP_008854012.1 NC_022918_p64 hypothetical protein phrog_3093 unknown function unknown function -1 31466 31690
YP_008853995.1 NC_022918_p47 hypothetical protein phrog_3635 unknown function unknown function -1 21614 22156
YP_008854022.1 NC_022918_p74 hypothetical protein phrog_200 lipoprotein other -1 36894 37688
YP_008854082.1 NC_022918_p134 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 99348 99944
YP_008853966.1 NC_022918_p18 hypothetical protein phrog_8721 unknown function unknown function 1 8106 8327
YP_008853963.1 NC_022918_p15 hypothetical protein phrog_3276 unknown function unknown function 1 6282 6605
YP_008854041.1 NC_022918_p93 phage portal structural protein phrog_12 portal protein head and packaging 1 50352 52043
YP_008853981.1 NC_022918_p33 hypothetical protein phrog_2349 unknown function unknown function -1 12990 13430
YP_008853991.1 NC_022918_p43 hypothetical protein phrog_3697 unknown function unknown function -1 20156 20383
YP_008854021.1 NC_022918_p73 homing endonuclease phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism -1 35918 36865
YP_008854034.1 NC_022918_p86 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 44582 44992
YP_008853985.1 NC_022918_p37 hypothetical protein phrog_246 NinI-like serine-threonine phosphatase other -1 14906 15607
YP_008854125.1 NC_022918_p177 hypothetical protein phrog_3524 unknown function unknown function 1 128751 128927
YP_008854004.1 NC_022918_p56 hypothetical protein phrog_3048 unknown function unknown function -1 26429 26617
YP_008854051.1 NC_022918_p103 structural phage tail sheath protein phrog_279 tail sheath tail 1 59412 61175
YP_008854098.1 NC_022918_p150 RecA phrog_97 UvsX-like recombinase other 1 113370 114626
YP_008854028.1 NC_022918_p80 hypothetical protein phrog_1215 unknown function unknown function -1 42610 42819
YP_008853965.1 NC_022918_p17 hypothetical protein phrog_3543 unknown function unknown function 1 7281 7661
YP_008854003.1 NC_022918_p55 hypothetical protein phrog_715 MazG-like pyrophosphatase other -1 26127 26429
YP_008853955.1 NC_022918_p7 hypothetical protein phrog_654 unknown function unknown function 1 2226 2522
YP_008854101.1 NC_022918_p153 structural protein phrog_1240 Ig domain containing protein other 1 115759 116391
YP_008854057.1 NC_022918_p109 hypothetical protein phrog_1038 tail assembly chaperone tail 1 63269 63727
YP_008854075.1 NC_022918_p127 hypothetical protein phrog_2691 tail fiber protein tail 1 88420 89796
YP_008854008.1 NC_022918_p60 hypothetical protein phrog_1274 lysM motif protein lysis -1 29232 29405
YP_008853957.1 NC_022918_p9 homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2890 3498
YP_008854108.1 NC_022918_p160 hypothetical protein phrog_3644 unknown function unknown function 1 119894 120205
YP_008853974.1 NC_022918_p26 hypothetical protein phrog_6205 unknown function unknown function 1 10476 10697
YP_008854068.1 NC_022918_p120 structural baseplate J-like protein phrog_6 baseplate wedge subunit tail 1 78153 79199
YP_008853999.1 NC_022918_p51 hypothetical protein phrog_1909 unknown function unknown function -1 23131 23976
YP_008854062.1 NC_022918_p114 hypothetical protein phrog_20793 unknown function unknown function 1 71911 72171
YP_008853961.1 NC_022918_p13 hypothetical protein phrog_3388 unknown function unknown function 1 5247 5438
YP_008854052.1 NC_022918_p104 structural protein phrog_985 virion structural protein head and packaging 1 61248 61676
YP_008854120.1 NC_022918_p172 hypothetical protein phrog_3664 DNA sliding clamp inhibitor; arrest of S.aureus DNA synthesis DNA, RNA and nucleotide metabolism 1 127108 127284
YP_008854069.1 NC_022918_p121 structural protein phrog_2386 virion structural protein head and packaging 1 79220 81778
YP_008854053.1 NC_022918_p105 hypothetical protein phrog_8192 unknown function unknown function 1 61765 61923
YP_008854014.1 NC_022918_p66 hypothetical protein phrog_2995 unknown function unknown function -1 32551 33165
YP_008854073.1 NC_022918_p125 structural protein phrog_2665 virion structural protein head and packaging 1 86097 88019
YP_008854107.1 NC_022918_p159 hypothetical protein phrog_2892 unknown function unknown function 1 119539 119907
YP_008853986.1 NC_022918_p38 hypothetical protein phrog_13015 virion structural protein head and packaging -1 15704 17572
YP_008854059.1 NC_022918_p111 hypothetical protein phrog_1047 tail associated lysin tail 1 64363 68418
YP_008854047.1 NC_022918_p99 structural protein phrog_1004 virion structural protein head and packaging 1 56815 57693
YP_008854078.1 NC_022918_p130 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 94506 95948
YP_008854065.1 NC_022918_p117 structural protein phrog_1011 virion structural protein head and packaging 1 76119 76910
YP_008854114.1 NC_022918_p166 structural protein phrog_1104 virion structural protein head and packaging 1 123973 124431
YP_008854029.1 NC_022918_p81 hypothetical protein phrog_937 hemolysin other -1 42832 43164
YP_008854063.1 NC_022918_p115 transposase phrog_506 transposase integration and excision 1 72161 73270
YP_008854013.1 NC_022918_p65 hypothetical protein phrog_170 PhoH-like phosphate starvation-inducible other -1 31759 32499
YP_008853992.1 NC_022918_p44 hypothetical protein phrog_2164 unknown function unknown function -1 20385 20771
YP_008854026.1 NC_022918_p78 hypothetical protein phrog_987 unknown function unknown function -1 40184 40369
YP_008853970.1 NC_022918_p22 hypothetical protein phrog_4273 unknown function unknown function 1 9346 9690
YP_008853993.1 NC_022918_p45 hypothetical protein phrog_3504 unknown function unknown function -1 20868 21041
YP_008854042.1 NC_022918_p94 structural caudovirus prohead protease phrog_1028 head maturation protease head and packaging 1 52237 53010
YP_008854060.1 NC_022918_p112 hypothetical protein phrog_1015 tail protein with lysin activity tail 1 68498 70924
YP_008854126.1 NC_022918_p178 hypothetical protein phrog_3128 unknown function unknown function 1 128920 129216
YP_008854090.1 NC_022918_p142 hypothetical protein phrog_2797 unknown function unknown function 1 106096 106425
YP_008854040.1 NC_022918_p92 hypothetical protein phrog_1108 portal protein head and packaging 1 50037 50348
YP_008854104.1 NC_022918_p156 structural protein phrog_2673 unknown function unknown function 1 117263 117523
YP_008854072.1 NC_022918_p124 hypothetical protein phrog_1074 unknown function unknown function 1 85938 86096
YP_008854071.1 NC_022918_p123 structural protein phrog_877 unknown function unknown function 1 82431 85889
YP_008853976.1 NC_022918_p28 hypothetical protein phrog_2884 unknown function unknown function -1 11402 11650
YP_008853956.1 NC_022918_p8 hypothetical protein phrog_1099 unknown function unknown function 1 2526 2783
YP_008854117.1 NC_022918_p169 hypothetical protein phrog_2863 unknown function unknown function 1 125723 126121
YP_008854132.1 NC_022918_p184 hypothetical protein phrog_31426 unknown function unknown function 1 130760 131251
YP_008854074.1 NC_022918_p126 hypothetical protein phrog_2671 tail fiber protein tail 1 88042 88413
YP_008854083.1 NC_022918_p135 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 99959 101026
YP_008853954.1 NC_022918_p6 hypothetical protein phrog_654 unknown function unknown function 1 1939 2226
YP_008853960.1 NC_022918_p12 hypothetical protein phrog_3164 unknown function unknown function 1 4888 5172
YP_008854032.1 NC_022918_p84 hypothetical protein phrog_3395 membrane protein moron, auxiliary metabolic gene and host takeover 1 43943 44329
YP_008854105.1 NC_022918_p157 hypothetical protein phrog_2721 unknown function unknown function 1 117527 118282