| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022965 |
Definition |
Mycobacterium phage CloudWang3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52873 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
103 |
%GC |
61.35 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008856872.1 | NC_022965_p99 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 50648 | 50845 |
| YP_008856828.1 | NC_022965_p55 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 35983 | 36753 |
| YP_008856846.1 | NC_022965_p73 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42622 | 43443 |
| YP_008856862.1 | NC_022965_p89 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 48080 | 48433 |
| YP_008856791.1 | NC_022965_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13462 | 13839 |
| YP_008856810.1 | NC_022965_p37 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 25999 | 26388 |
| YP_008856859.1 | NC_022965_p86 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 46857 | 47066 |
| YP_008856873.1 | NC_022965_p100 | hypothetical protein | phrog_9083 | unknown function | unknown function | -1 | 50850 | 50981 |
| YP_008856781.1 | NC_022965_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 4661 | 5359 |
| YP_008856775.1 | NC_022965_p2 | hypothetical protein | phrog_4415 | peptidase | other | 1 | 1089 | 1925 |
| YP_008856844.1 | NC_022965_p71 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 41894 | 42193 |
| YP_008856876.1 | NC_022965_p103 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51315 | 51647 |
| YP_008856845.1 | NC_022965_p72 | hypothetical protein | phrog_6023 | unknown function | unknown function | -1 | 42199 | 42573 |
| YP_008856804.1 | NC_022965_p31 | minor tail protein | phrog_2683 | minor tail protein | tail | 1 | 22503 | 23924 |
| YP_008856785.1 | NC_022965_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7511 | 9265 |
| YP_008856820.1 | NC_022965_p47 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30934 | 31140 |
| YP_008856795.1 | NC_022965_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14745 | 15164 |
| YP_008856871.1 | NC_022965_p98 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 49935 | 50645 |
| YP_008856861.1 | NC_022965_p88 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 47556 | 48083 |
| YP_008856815.1 | NC_022965_p42 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27583 | 29424 |
| YP_008856875.1 | NC_022965_p102 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51202 | 51282 |
| YP_008856832.1 | NC_022965_p59 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37751 | 38143 |
| YP_008856779.1 | NC_022965_p6 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3037 | 3999 |
| YP_008856803.1 | NC_022965_p30 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 22210 | 22506 |
| YP_008856778.1 | NC_022965_p5 | tail protein | phrog_226 | minor tail protein | tail | 1 | 2482 | 2952 |
| YP_008856807.1 | NC_022965_p34 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24840 | 25427 |
| YP_008856789.1 | NC_022965_p16 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12218 | 13189 |
| YP_008856863.1 | NC_022965_p90 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 48459 | 48839 |
| YP_008856813.1 | NC_022965_p40 | hypothetical protein | phrog_4371 | unknown function | unknown function | -1 | 27088 | 27345 |
| YP_008856821.1 | NC_022965_p48 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31142 | 31870 |
| YP_008856869.1 | NC_022965_p96 | hypothetical protein | phrog_6665 | unknown function | unknown function | -1 | 49614 | 49727 |
| YP_008856837.1 | NC_022965_p64 | hypothetical protein | phrog_3369 | unknown function | unknown function | -1 | 39318 | 39467 |
| YP_008856792.1 | NC_022965_p19 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 13836 | 14027 |
| YP_008856855.1 | NC_022965_p82 | hypothetical protein | phrog_9760 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 46005 | 46130 |
| YP_008856788.1 | NC_022965_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11655 | 12185 |
| YP_008856783.1 | NC_022965_p10 | LysA | phrog_317 | endolysin | lysis | 1 | 5832 | 7043 |
| YP_008856847.1 | NC_022965_p74 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 43440 | 43853 |
| YP_008856823.1 | NC_022965_p50 | hypothetical protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32573 | 32944 |
| YP_008856786.1 | NC_022965_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9262 | 10725 |
| YP_008856800.1 | NC_022965_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18960 | 19976 |
| YP_008856866.1 | NC_022965_p93 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49119 | 49322 |
| YP_008856790.1 | NC_022965_p17 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13262 | 13459 |
| YP_008856867.1 | NC_022965_p94 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49322 | 49498 |
| YP_008856817.1 | NC_022965_p44 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 29617 | 29955 |
| YP_008856868.1 | NC_022965_p95 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 49486 | 49614 |
| YP_008856776.1 | NC_022965_p3 | hypothetical protein | phrog_4347 | unknown function | unknown function | 1 | 1925 | 2146 |
| YP_008856856.1 | NC_022965_p83 | SprT-like protein | phrog_1006 | unknown function | unknown function | -1 | 46091 | 46525 |
| YP_008856843.1 | NC_022965_p70 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41640 | 41897 |
| YP_008856838.1 | NC_022965_p65 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39464 | 39697 |
| YP_008856801.1 | NC_022965_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19949 | 21745 |
| YP_008856860.1 | NC_022965_p87 | DNA methylase | phrog_1008 | DNA methyltransferase | other | -1 | 47087 | 47734 |
| YP_008856819.1 | NC_022965_p46 | HTH domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30506 | 30934 |
| YP_008856841.1 | NC_022965_p68 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 40571 | 40750 |
| YP_008856827.1 | NC_022965_p54 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35311 | 35979 |
| YP_008856793.1 | NC_022965_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14027 | 14395 |
| YP_008856824.1 | NC_022965_p51 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32944 | 34998 |
| YP_008856798.1 | NC_022965_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15844 | 16311 |
| YP_008856805.1 | NC_022965_p32 | Gatase1-like domain protein | phrog_2235 | minor tail protein | tail | 1 | 23935 | 24219 |
| YP_008856851.1 | NC_022965_p78 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 45124 | 45345 |
| YP_008856822.1 | NC_022965_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32023 | 32568 |
| YP_008856812.1 | NC_022965_p39 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 26789 | 27091 |
| YP_008856811.1 | NC_022965_p38 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26385 | 26792 |
| YP_008856825.1 | NC_022965_p52 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34995 | 35177 |
| YP_008856797.1 | NC_022965_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15844 | 16724 |
| YP_008856831.1 | NC_022965_p58 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37291 | 37923 |
| YP_008856839.1 | NC_022965_p66 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 39817 | 40203 |
| YP_008856802.1 | NC_022965_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 21761 | 22213 |
| YP_008856830.1 | NC_022965_p57 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 37190 | 37291 |
| YP_008856816.1 | NC_022965_p43 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 29432 | 29620 |
| YP_008856818.1 | NC_022965_p45 | RNA ligase | phrog_548 | RNA ligase | DNA, RNA and nucleotide metabolism | -1 | 29955 | 30506 |
| YP_008856836.1 | NC_022965_p63 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39181 | 39321 |
| YP_008856849.1 | NC_022965_p76 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 44626 | 44778 |
| YP_008856833.1 | NC_022965_p60 | EndoVII | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38136 | 38546 |
| YP_008856853.1 | NC_022965_p80 | hypothetical protein | phrog_1342 | unknown function | unknown function | -1 | 45476 | 45697 |
| YP_008856774.1 | NC_022965_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 418 | 1176 |
| YP_008856809.1 | NC_022965_p36 | hypothetical protein | phrog_5261 | unknown function | unknown function | 1 | 25751 | 25912 |
| YP_008856842.1 | NC_022965_p69 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40783 | 41589 |
| YP_008856864.1 | NC_022965_p91 | hypothetical protein | phrog_5098 | unknown function | unknown function | -1 | 48836 | 49033 |
| YP_008856782.1 | NC_022965_p9 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 5695 | 5832 |
| YP_008856874.1 | NC_022965_p101 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 50984 | 51172 |
| YP_008856857.1 | NC_022965_p84 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 46556 | 46699 |
| YP_008856784.1 | NC_022965_p11 | holin | phrog_526 | holin | lysis | 1 | 7043 | 7474 |
| YP_008856854.1 | NC_022965_p81 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45697 | 46008 |
| YP_008856870.1 | NC_022965_p97 | hypothetical protein | phrog_3831 | unknown function | unknown function | -1 | 49729 | 49938 |
| YP_008856834.1 | NC_022965_p61 | hypothetical protein | phrog_4886 | unknown function | unknown function | -1 | 38564 | 38716 |
| YP_008856799.1 | NC_022965_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16717 | 18933 |
| YP_008856777.1 | NC_022965_p4 | HNH domain protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2143 | 2439 |
| YP_008856840.1 | NC_022965_p67 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 40200 | 40556 |
| YP_008856865.1 | NC_022965_p92 | hypothetical protein | phrog_2001 | unknown function | unknown function | -1 | 49030 | 49122 |
| YP_008856852.1 | NC_022965_p79 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 45354 | 45503 |
| YP_008856780.1 | NC_022965_p7 | tail protein | phrog_819 | tail protein | tail | 1 | 3999 | 4664 |
| YP_008856794.1 | NC_022965_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14395 | 14748 |
| YP_008856835.1 | NC_022965_p62 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38709 | 39209 |
| YP_008856826.1 | NC_022965_p53 | hypothetical protein | phrog_5870 | unknown function | unknown function | -1 | 35174 | 35314 |
| YP_008856858.1 | NC_022965_p85 | hypothetical protein | phrog_865 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46696 | 46854 |
| YP_008856796.1 | NC_022965_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15193 | 15795 |
| YP_008856806.1 | NC_022965_p33 | hypothetical protein | phrog_12066 | unknown function | unknown function | 1 | 24284 | 24478 |
| YP_008856814.1 | NC_022965_p41 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 27342 | 27560 |
| YP_008856829.1 | NC_022965_p56 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 36750 | 37193 |
| YP_008856850.1 | NC_022965_p77 | hypothetical protein | phrog_3236 | unknown function | unknown function | -1 | 44783 | 45127 |
| YP_008856808.1 | NC_022965_p35 | ParB | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25420 | 25695 |
| YP_008856848.1 | NC_022965_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43875 | 44426 |
| YP_008856787.1 | NC_022965_p14 | capsid assembly protease | phrog_193 | head maturation protease | head and packaging | 1 | 10800 | 11606 |