| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022973 |
Definition |
Mycobacterium phage Conspiracy, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
50755 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
60.61 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008857992.1 | NC_022973_p55 | hypothetical protein | phrog_6549 | unknown function | unknown function | -1 | 38848 | 39066 |
| YP_008857974.1 | NC_022973_p37 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28502 | 30346 |
| YP_008857978.1 | NC_022973_p41 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 31774 | 32307 |
| YP_008857960.1 | NC_022973_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19564 | 21363 |
| YP_008857948.1 | NC_022973_p11 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10081 | 10590 |
| YP_008858005.1 | NC_022973_p68 | hypothetical protein | phrog_5957 | unknown function | unknown function | -1 | 42956 | 43246 |
| YP_008858000.1 | NC_022973_p63 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40365 | 40754 |
| YP_008858020.1 | NC_022973_p83 | hypothetical protein | phrog_6093 | unknown function | unknown function | -1 | 48444 | 48590 |
| YP_008857939.1 | NC_022973_p2 | minor tail subunit | phrog_226 | minor tail protein | tail | 1 | 872 | 1321 |
| YP_008857958.1 | NC_022973_p21 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15069 | 18410 |
| YP_008857970.1 | NC_022973_p33 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 27060 | 27260 |
| YP_008857986.1 | NC_022973_p49 | hypothetical protein | phrog_4195 | unknown function | unknown function | -1 | 36747 | 37166 |
| YP_008858011.1 | NC_022973_p74 | hypothetical protein | phrog_5561 | unknown function | unknown function | -1 | 45015 | 45200 |
| YP_008857941.1 | NC_022973_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2386 | 3441 |
| YP_008858009.1 | NC_022973_p72 | hypothetical protein | phrog_5066 | unknown function | unknown function | -1 | 44596 | 44853 |
| YP_008857968.1 | NC_022973_p31 | cytidine deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 26372 | 26881 |
| YP_008858016.1 | NC_022973_p79 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 46497 | 46637 |
| YP_008857984.1 | NC_022973_p47 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35516 | 36286 |
| YP_008858023.1 | NC_022973_p86 | hypothetical protein | phrog_8568 | unknown function | unknown function | -1 | 50030 | 50263 |
| YP_008857967.1 | NC_022973_p30 | DNA binding domain protein | phrog_733 | excisionase | integration and excision | 1 | 25853 | 26272 |
| YP_008857961.1 | NC_022973_p24 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 21377 | 21841 |
| YP_008858004.1 | NC_022973_p67 | RecB-like nuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42144 | 42959 |
| YP_008857952.1 | NC_022973_p15 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 12135 | 12497 |
| YP_008857950.1 | NC_022973_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 11624 | 11998 |
| YP_008857989.1 | NC_022973_p52 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37713 | 38372 |
| YP_008857982.1 | NC_022973_p45 | hypothetical protein | phrog_5897 | unknown function | unknown function | -1 | 34798 | 34893 |
| YP_008857980.1 | NC_022973_p43 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34399 | 34569 |
| YP_008857943.1 | NC_022973_p6 | LysA | phrog_1512 | endolysin | lysis | 1 | 4262 | 5176 |
| YP_008857996.1 | NC_022973_p59 | hypothetical protein | phrog_13032 | unknown function | unknown function | -1 | 39900 | 40055 |
| YP_008858015.1 | NC_022973_p78 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46375 | 46500 |
| YP_008857963.1 | NC_022973_p26 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 22133 | 22453 |
| YP_008858007.1 | NC_022973_p70 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 44057 | 44353 |
| YP_008857990.1 | NC_022973_p53 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38182 | 38592 |
| YP_008857998.1 | NC_022973_p61 | hypothetical protein | phrog_6893 | unknown function | unknown function | -1 | 40136 | 40219 |
| YP_008858021.1 | NC_022973_p84 | hypothetical protein | phrog_6340 | unknown function | unknown function | -1 | 48593 | 49006 |
| YP_008857946.1 | NC_022973_p9 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 7757 | 9190 |
| YP_008858010.1 | NC_022973_p73 | hypothetical protein | phrog_6322 | unknown function | unknown function | -1 | 44850 | 45002 |
| YP_008858022.1 | NC_022973_p85 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 49062 | 49223 |
| YP_008857966.1 | NC_022973_p29 | integrase | phrog_95 | integrase | integration and excision | -1 | 24193 | 25686 |
| YP_008857944.1 | NC_022973_p7 | LysB | phrog_102 | endolysin | lysis | 1 | 5173 | 5982 |
| YP_008857957.1 | NC_022973_p20 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14271 | 14651 |
| YP_008857987.1 | NC_022973_p50 | hypothetical protein | phrog_5242 | unknown function | unknown function | -1 | 37163 | 37429 |
| YP_008857973.1 | NC_022973_p36 | hypothetical protein | phrog_2650 | unknown function | unknown function | -1 | 28039 | 28482 |
| YP_008857964.1 | NC_022973_p27 | hypothetical protein | phrog_2683 | minor tail protein | tail | 1 | 22450 | 23847 |
| YP_008857969.1 | NC_022973_p32 | hypothetical protein | phrog_6992 | unknown function | unknown function | -1 | 26878 | 27051 |
| YP_008858001.1 | NC_022973_p64 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40763 | 41569 |
| YP_008857981.1 | NC_022973_p44 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 34569 | 34805 |
| YP_008857954.1 | NC_022973_p17 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 12910 | 13317 |
| YP_008857979.1 | NC_022973_p42 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32333 | 34402 |
| YP_008857999.1 | NC_022973_p62 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 40216 | 40368 |
| YP_008858019.1 | NC_022973_p82 | hypothetical protein | phrog_3906 | unknown function | unknown function | -1 | 47519 | 48352 |
| YP_008857971.1 | NC_022973_p34 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27307 | 27768 |
| YP_008857995.1 | NC_022973_p58 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39441 | 39899 |
| YP_008857972.1 | NC_022973_p35 | hypothetical protein | phrog_5282 | unknown function | unknown function | -1 | 27758 | 28042 |
| YP_008857976.1 | NC_022973_p39 | HTH domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30743 | 30997 |
| YP_008857988.1 | NC_022973_p51 | hypothetical protein | phrog_5270 | unknown function | unknown function | -1 | 37426 | 37716 |
| YP_008858008.1 | NC_022973_p71 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 44354 | 44599 |
| YP_008857962.1 | NC_022973_p25 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 21834 | 22136 |
| YP_008858012.1 | NC_022973_p75 | hypothetical protein | phrog_5476 | unknown function | unknown function | -1 | 45197 | 45538 |
| YP_008858014.1 | NC_022973_p77 | hypothetical protein | phrog_6186 | unknown function | unknown function | -1 | 45752 | 46378 |
| YP_008857953.1 | NC_022973_p16 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 12497 | 12910 |
| YP_008857955.1 | NC_022973_p18 | major tail protein | phrog_117 | major tail protein | tail | 1 | 13333 | 14160 |
| YP_008858002.1 | NC_022973_p65 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41612 | 41863 |
| YP_008857975.1 | NC_022973_p38 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 30360 | 30746 |
| YP_008857951.1 | NC_022973_p14 | hypothetical protein | phrog_2348 | unknown function | unknown function | 1 | 11995 | 12138 |
| YP_008857985.1 | NC_022973_p48 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 36283 | 36750 |
| YP_008857938.1 | NC_022973_p1 | HNH protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 535 | 834 |
| YP_008857994.1 | NC_022973_p57 | hypothetical protein | phrog_4670 | unknown function | unknown function | -1 | 39287 | 39421 |
| YP_008857947.1 | NC_022973_p10 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9187 | 10026 |
| YP_008857997.1 | NC_022973_p60 | hypothetical protein | phrog_4539 | unknown function | unknown function | -1 | 40045 | 40143 |
| YP_008857945.1 | NC_022973_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 5979 | 7757 |
| YP_008858003.1 | NC_022973_p66 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 41838 | 42140 |
| YP_008857942.1 | NC_022973_p5 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 3447 | 4088 |
| YP_008857965.1 | NC_022973_p28 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 23857 | 24141 |
| YP_008857959.1 | NC_022973_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18474 | 19487 |
| YP_008858013.1 | NC_022973_p76 | hypothetical protein | phrog_6649 | unknown function | unknown function | -1 | 45535 | 45741 |
| YP_008857991.1 | NC_022973_p54 | hypothetical protein | phrog_5993 | unknown function | unknown function | -1 | 38594 | 38851 |
| YP_008857977.1 | NC_022973_p40 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30999 | 31718 |
| YP_008857949.1 | NC_022973_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 10617 | 11546 |
| YP_008857956.1 | NC_022973_p19 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14271 | 15064 |
| YP_008858017.1 | NC_022973_p80 | ArdA-like protein | phrog_2059 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | -1 | 46654 | 47169 |
| YP_008857983.1 | NC_022973_p46 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 34893 | 35519 |
| YP_008857993.1 | NC_022973_p56 | hypothetical protein | phrog_10096 | unknown function | unknown function | -1 | 39066 | 39290 |
| YP_008858018.1 | NC_022973_p81 | hypothetical protein | phrog_5927 | unknown function | unknown function | -1 | 47187 | 47402 |
| YP_008858006.1 | NC_022973_p69 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43263 | 43793 |
| YP_008857940.1 | NC_022973_p3 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 1427 | 2389 |