Genomic map of Mycobacterium phage HanShotFirst (NC_022975)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022975
Definition
Mycobacterium phage HanShotFirst, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52390
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
91
%GC
63.81
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008858273.1 NC_022975_p84 NifU-like domain protein phrog_8429 NifU-like Fe-S cluster assembly protein moron, auxiliary metabolic gene and host takeover -1 49305 49721
YP_008858265.1 NC_022975_p76 hypothetical protein phrog_6510 unknown function unknown function -1 47670 47852
YP_008858199.1 NC_022975_p10 LysB phrog_102 endolysin lysis 1 5623 6591
YP_008858238.1 NC_022975_p49 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35289 36074
YP_008858254.1 NC_022975_p65 hypothetical protein phrog_2507 unknown function unknown function -1 43648 43821
YP_008858200.1 NC_022975_p11 terminase phrog_9 terminase large subunit head and packaging 1 6611 8299
YP_008858198.1 NC_022975_p9 LysA phrog_317 endolysin lysis 1 4212 5633
YP_008858266.1 NC_022975_p77 hypothetical protein phrog_1387 unknown function unknown function -1 47849 48049
YP_008858234.1 NC_022975_p45 hypothetical protein phrog_1781 unknown function unknown function -1 33994 34224
YP_008858211.1 NC_022975_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15469 16268
YP_008858274.1 NC_022975_p85 tRNA methyl transferase phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 49718 50638
YP_008858226.1 NC_022975_p37 hypothetical protein phrog_12181 unknown function unknown function -1 30595 30903
YP_008858246.1 NC_022975_p57 hypothetical protein phrog_11567 unknown function unknown function -1 39891 40067
YP_008858233.1 NC_022975_p44 hypothetical protein phrog_542 unknown function unknown function -1 33872 33997
YP_008858214.1 NC_022975_p25 minor tail protein phrog_106 minor tail protein tail 1 18775 20832
YP_008858268.1 NC_022975_p79 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48234 48401
YP_008858260.1 NC_022975_p71 hypothetical protein phrog_1584 unknown function unknown function -1 45574 45900
YP_008858259.1 NC_022975_p70 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44757 45581
YP_008858204.1 NC_022975_p15 capsid protein phrog_10 major head protein head and packaging 1 11197 12201
YP_008858257.1 NC_022975_p68 hypothetical protein phrog_2184 unknown function unknown function -1 44224 44544
YP_008858215.1 NC_022975_p26 hypothetical protein phrog_1543 minor tail protein tail 1 20851 21033
YP_008858193.1 NC_022975_p4 hypothetical protein phrog_7087 unknown function unknown function 1 1565 1801
YP_008858255.1 NC_022975_p66 hypothetical protein phrog_1705 unknown function unknown function -1 43818 43937
YP_008858269.1 NC_022975_p80 hypothetical protein phrog_2093 unknown function unknown function -1 48398 48526
YP_008858248.1 NC_022975_p59 hypothetical protein phrog_397 unknown function unknown function -1 40161 40295
YP_008858229.1 NC_022975_p40 hypothetical protein phrog_1860 unknown function unknown function -1 31252 31347
YP_008858196.1 NC_022975_p7 hypothetical protein phrog_1718 tail protein tail 1 3677 3937
YP_008858206.1 NC_022975_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12831 13280
YP_008858252.1 NC_022975_p63 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42531 42830
YP_008858271.1 NC_022975_p82 hypothetical protein phrog_932 unknown function unknown function -1 48702 48854
YP_008858235.1 NC_022975_p46 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34255 34746
YP_008858243.1 NC_022975_p54 DNA primase phrog_1167 phosphofructokinase other -1 38306 38872
YP_008858280.1 NC_022975_p91 hypothetical protein phrog_13308 unknown function unknown function -1 51714 52097
YP_008858239.1 NC_022975_p50 hypothetical protein phrog_5618 unknown function unknown function -1 36067 36276
YP_008858249.1 NC_022975_p60 DNA methyltransferase phrog_67 DNA methyltransferase other -1 40321 41970
YP_008858191.1 NC_022975_p2 HNH domain protein singleton unknown function unknown function 1 873 1067
YP_008858251.1 NC_022975_p62 hypothetical protein phrog_1019 unknown function unknown function -1 42448 42534
YP_008858241.1 NC_022975_p52 phosphoesterase phrog_221 metallo-phosphoesterase other -1 36415 38133
YP_008858227.1 NC_022975_p38 hypothetical protein phrog_6549 unknown function unknown function -1 30900 31085
YP_008858245.1 NC_022975_p56 hypothetical protein phrog_1783 unknown function unknown function -1 39730 39891
YP_008858217.1 NC_022975_p28 hypothetical protein phrog_352 minor tail protein tail 1 22873 23319
YP_008858201.1 NC_022975_p12 portal protein phrog_104 portal protein head and packaging 1 8296 9738
YP_008858253.1 NC_022975_p64 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42827 43648
YP_008858202.1 NC_022975_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9735 10616
YP_008858256.1 NC_022975_p67 hypothetical protein phrog_520 unknown function unknown function -1 43934 44227
YP_008858209.1 NC_022975_p20 hypothetical protein phrog_123 tail terminator connector 1 14041 14487
YP_008858195.1 NC_022975_p6 hypothetical protein phrog_553 minor tail protein tail 1 2962 3663
YP_008858203.1 NC_022975_p14 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 10675 11187
YP_008858207.1 NC_022975_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 13280 13642
YP_008858228.1 NC_022975_p39 hypothetical protein phrog_2035 unknown function unknown function -1 31085 31264
YP_008858192.1 NC_022975_p3 hypothetical protein phrog_226 minor tail protein tail 1 1083 1517
YP_008858231.1 NC_022975_p42 hypothetical protein phrog_383 unknown function unknown function -1 31628 32008
YP_008858218.1 NC_022975_p29 hypothetical protein phrog_981 minor tail protein tail 1 23331 23663
YP_008858219.1 NC_022975_p30 hypothetical protein phrog_1397 unknown function unknown function 1 23660 24007
YP_008858263.1 NC_022975_p74 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47108 47407
YP_008858276.1 NC_022975_p87 hypothetical protein phrog_2287 unknown function unknown function -1 50784 50996
YP_008858277.1 NC_022975_p88 hypothetical protein phrog_2212 unknown function unknown function -1 51021 51140
YP_008858212.1 NC_022975_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15469 15846
YP_008858250.1 NC_022975_p61 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41967 42461
YP_008858262.1 NC_022975_p73 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46334 47020
YP_008858223.1 NC_022975_p34 hypothetical protein phrog_1560 unknown function unknown function 1 27781 27990
YP_008858208.1 NC_022975_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13642 14037
YP_008858220.1 NC_022975_p31 minor tail protein phrog_346 minor tail protein tail 1 24032 25885
YP_008858224.1 NC_022975_p35 hypothetical protein phrog_553 minor tail protein tail 1 27990 28676
YP_008858261.1 NC_022975_p72 hypothetical protein phrog_1809 unknown function unknown function -1 45897 46292
YP_008858240.1 NC_022975_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36273 36440
YP_008858244.1 NC_022975_p55 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38869 39390
YP_008858279.1 NC_022975_p90 hypothetical protein phrog_828 unknown function unknown function 1 51379 51594
YP_008858236.1 NC_022975_p47 hypothetical protein phrog_2094 unknown function unknown function -1 34781 35113
YP_008858272.1 NC_022975_p83 hypothetical protein phrog_14636 unknown function unknown function -1 48855 49025
YP_008858225.1 NC_022975_p36 integrase (S-int) phrog_95 integrase integration and excision 1 28972 30474
YP_008858230.1 NC_022975_p41 hypothetical protein phrog_1971 unknown function unknown function -1 31344 31631
YP_008858213.1 NC_022975_p24 tapemeasure phrog_305 tail length tape measure protein tail 1 16280 18751
YP_008858242.1 NC_022975_p53 hypothetical protein phrog_1503 unknown function unknown function -1 38130 38336
YP_008858197.1 NC_022975_p8 hypothetical protein phrog_747 unknown function unknown function 1 3945 4202
YP_008858278.1 NC_022975_p89 hypothetical protein phrog_3574 unknown function unknown function 1 51158 51352
YP_008858216.1 NC_022975_p27 minor tail protein phrog_110 minor tail protein tail 1 21033 22835
YP_008858258.1 NC_022975_p69 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44548 44730
YP_008858264.1 NC_022975_p75 hypothetical protein phrog_1720 unknown function unknown function -1 47404 47673
YP_008858210.1 NC_022975_p21 major tail protein phrog_117 major tail protein tail 1 14496 15347
YP_008858221.1 NC_022975_p32 carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 25878 27359
YP_008858205.1 NC_022975_p16 hypothetical protein phrog_1857 head-tail connector protein connector 1 12280 12831
YP_008858237.1 NC_022975_p48 hypothetical protein phrog_499 unknown function unknown function -1 35086 35292
YP_008858247.1 NC_022975_p58 hypothetical protein phrog_5801 unknown function unknown function -1 40090 40164
YP_008858267.1 NC_022975_p78 hypothetical protein phrog_1155 unknown function unknown function -1 48046 48234
YP_008858270.1 NC_022975_p81 hypothetical protein singleton unknown function unknown function -1 48523 48705
YP_008858222.1 NC_022975_p33 hypothetical protein phrog_644 unknown function unknown function 1 27403 27771
YP_008858232.1 NC_022975_p43 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32005 33831
YP_008858275.1 NC_022975_p86 hypothetical protein phrog_14752 unknown function unknown function -1 50635 50787
YP_008858194.1 NC_022975_p5 hypothetical protein phrog_1197 tail protein tail 1 1882 2952
YP_008858190.1 NC_022975_p1 hypothetical protein phrog_4649 unknown function unknown function 1 601 753