| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022975 |
Definition |
Mycobacterium phage HanShotFirst, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52390 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
63.81 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008858273.1 | NC_022975_p84 | NifU-like domain protein | phrog_8429 | NifU-like Fe-S cluster assembly protein | moron, auxiliary metabolic gene and host takeover | -1 | 49305 | 49721 |
| YP_008858265.1 | NC_022975_p76 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 47670 | 47852 |
| YP_008858199.1 | NC_022975_p10 | LysB | phrog_102 | endolysin | lysis | 1 | 5623 | 6591 |
| YP_008858238.1 | NC_022975_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35289 | 36074 |
| YP_008858254.1 | NC_022975_p65 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43648 | 43821 |
| YP_008858200.1 | NC_022975_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6611 | 8299 |
| YP_008858198.1 | NC_022975_p9 | LysA | phrog_317 | endolysin | lysis | 1 | 4212 | 5633 |
| YP_008858266.1 | NC_022975_p77 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47849 | 48049 |
| YP_008858234.1 | NC_022975_p45 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 33994 | 34224 |
| YP_008858211.1 | NC_022975_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15469 | 16268 |
| YP_008858274.1 | NC_022975_p85 | tRNA methyl transferase | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 49718 | 50638 |
| YP_008858226.1 | NC_022975_p37 | hypothetical protein | phrog_12181 | unknown function | unknown function | -1 | 30595 | 30903 |
| YP_008858246.1 | NC_022975_p57 | hypothetical protein | phrog_11567 | unknown function | unknown function | -1 | 39891 | 40067 |
| YP_008858233.1 | NC_022975_p44 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 33872 | 33997 |
| YP_008858214.1 | NC_022975_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18775 | 20832 |
| YP_008858268.1 | NC_022975_p79 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48234 | 48401 |
| YP_008858260.1 | NC_022975_p71 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45574 | 45900 |
| YP_008858259.1 | NC_022975_p70 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44757 | 45581 |
| YP_008858204.1 | NC_022975_p15 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11197 | 12201 |
| YP_008858257.1 | NC_022975_p68 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44224 | 44544 |
| YP_008858215.1 | NC_022975_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20851 | 21033 |
| YP_008858193.1 | NC_022975_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1565 | 1801 |
| YP_008858255.1 | NC_022975_p66 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43818 | 43937 |
| YP_008858269.1 | NC_022975_p80 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48398 | 48526 |
| YP_008858248.1 | NC_022975_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40161 | 40295 |
| YP_008858229.1 | NC_022975_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31252 | 31347 |
| YP_008858196.1 | NC_022975_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3677 | 3937 |
| YP_008858206.1 | NC_022975_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12831 | 13280 |
| YP_008858252.1 | NC_022975_p63 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42531 | 42830 |
| YP_008858271.1 | NC_022975_p82 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48702 | 48854 |
| YP_008858235.1 | NC_022975_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34255 | 34746 |
| YP_008858243.1 | NC_022975_p54 | DNA primase | phrog_1167 | phosphofructokinase | other | -1 | 38306 | 38872 |
| YP_008858280.1 | NC_022975_p91 | hypothetical protein | phrog_13308 | unknown function | unknown function | -1 | 51714 | 52097 |
| YP_008858239.1 | NC_022975_p50 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 36067 | 36276 |
| YP_008858249.1 | NC_022975_p60 | DNA methyltransferase | phrog_67 | DNA methyltransferase | other | -1 | 40321 | 41970 |
| YP_008858191.1 | NC_022975_p2 | HNH domain protein | singleton | unknown function | unknown function | 1 | 873 | 1067 |
| YP_008858251.1 | NC_022975_p62 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42448 | 42534 |
| YP_008858241.1 | NC_022975_p52 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36415 | 38133 |
| YP_008858227.1 | NC_022975_p38 | hypothetical protein | phrog_6549 | unknown function | unknown function | -1 | 30900 | 31085 |
| YP_008858245.1 | NC_022975_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39730 | 39891 |
| YP_008858217.1 | NC_022975_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22873 | 23319 |
| YP_008858201.1 | NC_022975_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8296 | 9738 |
| YP_008858253.1 | NC_022975_p64 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42827 | 43648 |
| YP_008858202.1 | NC_022975_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9735 | 10616 |
| YP_008858256.1 | NC_022975_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43934 | 44227 |
| YP_008858209.1 | NC_022975_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14041 | 14487 |
| YP_008858195.1 | NC_022975_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 2962 | 3663 |
| YP_008858203.1 | NC_022975_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10675 | 11187 |
| YP_008858207.1 | NC_022975_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13280 | 13642 |
| YP_008858228.1 | NC_022975_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31085 | 31264 |
| YP_008858192.1 | NC_022975_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1083 | 1517 |
| YP_008858231.1 | NC_022975_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 31628 | 32008 |
| YP_008858218.1 | NC_022975_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23331 | 23663 |
| YP_008858219.1 | NC_022975_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23660 | 24007 |
| YP_008858263.1 | NC_022975_p74 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47108 | 47407 |
| YP_008858276.1 | NC_022975_p87 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 50784 | 50996 |
| YP_008858277.1 | NC_022975_p88 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51021 | 51140 |
| YP_008858212.1 | NC_022975_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15469 | 15846 |
| YP_008858250.1 | NC_022975_p61 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41967 | 42461 |
| YP_008858262.1 | NC_022975_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46334 | 47020 |
| YP_008858223.1 | NC_022975_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27781 | 27990 |
| YP_008858208.1 | NC_022975_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13642 | 14037 |
| YP_008858220.1 | NC_022975_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24032 | 25885 |
| YP_008858224.1 | NC_022975_p35 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27990 | 28676 |
| YP_008858261.1 | NC_022975_p72 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45897 | 46292 |
| YP_008858240.1 | NC_022975_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36273 | 36440 |
| YP_008858244.1 | NC_022975_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38869 | 39390 |
| YP_008858279.1 | NC_022975_p90 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 51379 | 51594 |
| YP_008858236.1 | NC_022975_p47 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 34781 | 35113 |
| YP_008858272.1 | NC_022975_p83 | hypothetical protein | phrog_14636 | unknown function | unknown function | -1 | 48855 | 49025 |
| YP_008858225.1 | NC_022975_p36 | integrase (S-int) | phrog_95 | integrase | integration and excision | 1 | 28972 | 30474 |
| YP_008858230.1 | NC_022975_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31344 | 31631 |
| YP_008858213.1 | NC_022975_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16280 | 18751 |
| YP_008858242.1 | NC_022975_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38130 | 38336 |
| YP_008858197.1 | NC_022975_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 3945 | 4202 |
| YP_008858278.1 | NC_022975_p89 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 51158 | 51352 |
| YP_008858216.1 | NC_022975_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21033 | 22835 |
| YP_008858258.1 | NC_022975_p69 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44548 | 44730 |
| YP_008858264.1 | NC_022975_p75 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47404 | 47673 |
| YP_008858210.1 | NC_022975_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14496 | 15347 |
| YP_008858221.1 | NC_022975_p32 | carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25878 | 27359 |
| YP_008858205.1 | NC_022975_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12280 | 12831 |
| YP_008858237.1 | NC_022975_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35086 | 35292 |
| YP_008858247.1 | NC_022975_p58 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 40090 | 40164 |
| YP_008858267.1 | NC_022975_p78 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48046 | 48234 |
| YP_008858270.1 | NC_022975_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48523 | 48705 |
| YP_008858222.1 | NC_022975_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27403 | 27771 |
| YP_008858232.1 | NC_022975_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32005 | 33831 |
| YP_008858275.1 | NC_022975_p86 | hypothetical protein | phrog_14752 | unknown function | unknown function | -1 | 50635 | 50787 |
| YP_008858194.1 | NC_022975_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 1882 | 2952 |
| YP_008858190.1 | NC_022975_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 601 | 753 |