| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022979 |
Definition |
Mycobacterium phage Graduation, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52823 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
63.45 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008858628.1 | NC_022979_p90 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 50202 | 50285 |
| YP_008858584.1 | NC_022979_p46 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33296 | 33694 |
| YP_008858562.1 | NC_022979_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16297 | 17096 |
| YP_008858561.1 | NC_022979_p23 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15340 | 16188 |
| YP_008858625.1 | NC_022979_p87 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48756 | 48905 |
| YP_008858624.1 | NC_022979_p86 | hypothetical protein | phrog_9318 | unknown function | unknown function | -1 | 48567 | 48737 |
| YP_008858573.1 | NC_022979_p35 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28150 | 28551 |
| YP_008858553.1 | NC_022979_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10893 | 11774 |
| YP_008858570.1 | NC_022979_p32 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24486 | 24785 |
| YP_008858586.1 | NC_022979_p48 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34516 | 36333 |
| YP_008858556.1 | NC_022979_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13439 | 13675 |
| YP_008858599.1 | NC_022979_p61 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 40949 | 41023 |
| YP_008858544.1 | NC_022979_p6 | structural protein | phrog_1197 | tail protein | tail | 1 | 2366 | 3436 |
| YP_008858569.1 | NC_022979_p31 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24157 | 24489 |
| YP_008858621.1 | NC_022979_p83 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48093 | 48281 |
| YP_008858613.1 | NC_022979_p75 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44838 | 45662 |
| YP_008858566.1 | NC_022979_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21677 | 21859 |
| YP_008858633.1 | NC_022979_p95 | hypothetical protein | phrog_15443 | unknown function | unknown function | -1 | 51839 | 52063 |
| YP_008858564.1 | NC_022979_p26 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 17109 | 19577 |
| YP_008858622.1 | NC_022979_p84 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48281 | 48448 |
| YP_008858609.1 | NC_022979_p71 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43888 | 44181 |
| YP_008858555.1 | NC_022979_p17 | capsid major subunit | phrog_10 | major head protein | head and packaging | 1 | 12355 | 13353 |
| YP_008858589.1 | NC_022979_p51 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 37157 | 37489 |
| YP_008858630.1 | NC_022979_p92 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 50587 | 50775 |
| YP_008858545.1 | NC_022979_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3446 | 4141 |
| YP_008858601.1 | NC_022979_p63 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41299 | 41787 |
| YP_008858543.1 | NC_022979_p5 | hypothetical protein | phrog_25290 | unknown function | unknown function | 1 | 2083 | 2349 |
| YP_008858608.1 | NC_022979_p70 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 43622 | 43891 |
| YP_008858582.1 | NC_022979_p44 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32911 | 33006 |
| YP_008858580.1 | NC_022979_p42 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 32382 | 32744 |
| YP_008858602.1 | NC_022979_p64 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41774 | 41860 |
| YP_008858588.1 | NC_022979_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 36631 | 37122 |
| YP_008858627.1 | NC_022979_p89 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49507 | 50205 |
| YP_008858549.1 | NC_022979_p11 | LysA | phrog_317 | endolysin | lysis | 1 | 5397 | 6791 |
| YP_008858565.1 | NC_022979_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19601 | 21658 |
| YP_008858560.1 | NC_022979_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14885 | 15331 |
| YP_008858554.1 | NC_022979_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11833 | 12345 |
| YP_008858552.1 | NC_022979_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9454 | 10896 |
| YP_008858605.1 | NC_022979_p67 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42500 | 43321 |
| YP_008858576.1 | NC_022979_p38 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29660 | 29956 |
| YP_008858607.1 | NC_022979_p69 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43494 | 43625 |
| YP_008858596.1 | NC_022979_p58 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39924 | 40445 |
| YP_008858618.1 | NC_022979_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47469 | 47630 |
| YP_008858632.1 | NC_022979_p94 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 51159 | 51755 |
| YP_008858591.1 | NC_022979_p53 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37665 | 38456 |
| YP_008858547.1 | NC_022979_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4559 | 4816 |
| YP_008858578.1 | NC_022979_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31727 | 31999 |
| YP_008858597.1 | NC_022979_p59 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40291 | 40806 |
| YP_008858634.1 | NC_022979_p96 | hypothetical protein | phrog_10520 | unknown function | unknown function | -1 | 52060 | 52305 |
| YP_008858546.1 | NC_022979_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4291 | 4551 |
| YP_008858619.1 | NC_022979_p81 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47627 | 47896 |
| YP_008858542.1 | NC_022979_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1684 | 1995 |
| YP_008858575.1 | NC_022979_p37 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28751 | 29539 |
| YP_008858611.1 | NC_022979_p73 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44472 | 44654 |
| YP_008858594.1 | NC_022979_p56 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 39353 | 39532 |
| YP_008858581.1 | NC_022979_p43 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32744 | 32923 |
| YP_008858623.1 | NC_022979_p85 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48445 | 48570 |
| YP_008858603.1 | NC_022979_p65 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 41857 | 42237 |
| YP_008858610.1 | NC_022979_p72 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44178 | 44468 |
| YP_008858590.1 | NC_022979_p52 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37486 | 37668 |
| YP_008858567.1 | NC_022979_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21859 | 23661 |
| YP_008858557.1 | NC_022979_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13675 | 14124 |
| YP_008858585.1 | NC_022979_p47 | DNA methyltransferase | phrog_116 | DNA methyltransferase | other | -1 | 33666 | 34493 |
| YP_008858568.1 | NC_022979_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23699 | 24145 |
| YP_008858620.1 | NC_022979_p82 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47893 | 48096 |
| YP_008858595.1 | NC_022979_p57 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 39529 | 39927 |
| YP_008858615.1 | NC_022979_p77 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45966 | 46361 |
| YP_008858604.1 | NC_022979_p66 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42234 | 42500 |
| YP_008858574.1 | NC_022979_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28560 | 28751 |
| YP_008858550.1 | NC_022979_p12 | LysB | phrog_102 | endolysin | lysis | 1 | 6781 | 7749 |
| YP_008858635.1 | NC_022979_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52307 | 52474 |
| YP_008858551.1 | NC_022979_p13 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7769 | 9457 |
| YP_008858600.1 | NC_022979_p62 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41020 | 41280 |
| YP_008858614.1 | NC_022979_p76 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45655 | 45969 |
| YP_008858612.1 | NC_022979_p74 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 44651 | 44809 |
| YP_008858541.1 | NC_022979_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1130 | 1570 |
| YP_008858563.1 | NC_022979_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16297 | 16674 |
| YP_008858577.1 | NC_022979_p39 | integrase (S-Int) | phrog_95 | integrase | integration and excision | 1 | 30062 | 31606 |
| YP_008858558.1 | NC_022979_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14124 | 14486 |
| YP_008858587.1 | NC_022979_p49 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 36370 | 36600 |
| YP_008858616.1 | NC_022979_p78 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46403 | 46915 |
| YP_008858593.1 | NC_022979_p55 | NrdC | phrog_221 | metallo-phosphoesterase | other | -1 | 38589 | 39356 |
| YP_008858579.1 | NC_022979_p41 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31996 | 32385 |
| YP_008858559.1 | NC_022979_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14486 | 14881 |
| YP_008858626.1 | NC_022979_p88 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 48902 | 49219 |
| YP_008858548.1 | NC_022979_p10 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4816 | 5397 |
| YP_008858572.1 | NC_022979_p34 | carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26657 | 28141 |
| YP_008858592.1 | NC_022979_p54 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 38449 | 38589 |
| YP_008858598.1 | NC_022979_p60 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40785 | 40949 |
| YP_008858629.1 | NC_022979_p91 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 50345 | 50590 |
| YP_008858571.1 | NC_022979_p33 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24811 | 26664 |
| YP_008858606.1 | NC_022979_p68 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43321 | 43497 |
| YP_008858617.1 | NC_022979_p79 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47177 | 47476 |
| YP_008858540.1 | NC_022979_p2 | hypothetical protein | phrog_14140 | unknown function | unknown function | 1 | 902 | 1093 |
| YP_008858539.1 | NC_022979_p1 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 598 | 894 |
| YP_008858583.1 | NC_022979_p45 | hypothetical protein | phrog_9480 | unknown function | unknown function | -1 | 33003 | 33299 |
| YP_008858631.1 | NC_022979_p93 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50911 | 51162 |