Genomic map of Mycobacterium phage Graduation (NC_022979)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022979
Definition
Mycobacterium phage Graduation, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52823
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
97
%GC
63.45
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008858628.1 NC_022979_p90 hypothetical protein phrog_2212 unknown function unknown function -1 50202 50285
YP_008858584.1 NC_022979_p46 hypothetical protein phrog_383 unknown function unknown function -1 33296 33694
YP_008858562.1 NC_022979_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16297 17096
YP_008858561.1 NC_022979_p23 major tail subunit phrog_117 major tail protein tail 1 15340 16188
YP_008858625.1 NC_022979_p87 hypothetical protein phrog_932 unknown function unknown function -1 48756 48905
YP_008858624.1 NC_022979_p86 hypothetical protein phrog_9318 unknown function unknown function -1 48567 48737
YP_008858573.1 NC_022979_p35 hypothetical protein phrog_644 unknown function unknown function 1 28150 28551
YP_008858553.1 NC_022979_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10893 11774
YP_008858570.1 NC_022979_p32 hypothetical protein phrog_1397 unknown function unknown function 1 24486 24785
YP_008858586.1 NC_022979_p48 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 34516 36333
YP_008858556.1 NC_022979_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 13439 13675
YP_008858599.1 NC_022979_p61 hypothetical protein phrog_5801 unknown function unknown function -1 40949 41023
YP_008858544.1 NC_022979_p6 structural protein phrog_1197 tail protein tail 1 2366 3436
YP_008858569.1 NC_022979_p31 hypothetical protein phrog_981 minor tail protein tail 1 24157 24489
YP_008858621.1 NC_022979_p83 hypothetical protein phrog_1155 unknown function unknown function -1 48093 48281
YP_008858613.1 NC_022979_p75 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44838 45662
YP_008858566.1 NC_022979_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21677 21859
YP_008858633.1 NC_022979_p95 hypothetical protein phrog_15443 unknown function unknown function -1 51839 52063
YP_008858564.1 NC_022979_p26 tapemeasure phrog_305 tail length tape measure protein tail 1 17109 19577
YP_008858622.1 NC_022979_p84 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48281 48448
YP_008858609.1 NC_022979_p71 hypothetical protein phrog_520 unknown function unknown function -1 43888 44181
YP_008858555.1 NC_022979_p17 capsid major subunit phrog_10 major head protein head and packaging 1 12355 13353
YP_008858589.1 NC_022979_p51 hypothetical protein phrog_2094 unknown function unknown function -1 37157 37489
YP_008858630.1 NC_022979_p92 hypothetical protein phrog_5130 unknown function unknown function -1 50587 50775
YP_008858545.1 NC_022979_p7 hypothetical protein phrog_553 minor tail protein tail 1 3446 4141
YP_008858601.1 NC_022979_p63 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41299 41787
YP_008858543.1 NC_022979_p5 hypothetical protein phrog_25290 unknown function unknown function 1 2083 2349
YP_008858608.1 NC_022979_p70 hypothetical protein phrog_780 unknown function unknown function -1 43622 43891
YP_008858582.1 NC_022979_p44 hypothetical protein phrog_1860 unknown function unknown function -1 32911 33006
YP_008858580.1 NC_022979_p42 hypothetical protein phrog_722 unknown function unknown function -1 32382 32744
YP_008858602.1 NC_022979_p64 hypothetical protein phrog_1019 unknown function unknown function -1 41774 41860
YP_008858588.1 NC_022979_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 36631 37122
YP_008858627.1 NC_022979_p89 DNA methylase phrog_363 DNA methyltransferase other -1 49507 50205
YP_008858549.1 NC_022979_p11 LysA phrog_317 endolysin lysis 1 5397 6791
YP_008858565.1 NC_022979_p27 minor tail protein phrog_106 minor tail protein tail 1 19601 21658
YP_008858560.1 NC_022979_p22 hypothetical protein phrog_123 tail terminator connector 1 14885 15331
YP_008858554.1 NC_022979_p16 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11833 12345
YP_008858552.1 NC_022979_p14 portal protein phrog_104 portal protein head and packaging 1 9454 10896
YP_008858605.1 NC_022979_p67 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42500 43321
YP_008858576.1 NC_022979_p38 hypothetical protein phrog_411 unknown function unknown function 1 29660 29956
YP_008858607.1 NC_022979_p69 hypothetical protein phrog_1705 unknown function unknown function -1 43494 43625
YP_008858596.1 NC_022979_p58 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39924 40445
YP_008858618.1 NC_022979_p80 hypothetical protein singleton unknown function unknown function -1 47469 47630
YP_008858632.1 NC_022979_p94 hypothetical protein phrog_4006 unknown function unknown function -1 51159 51755
YP_008858591.1 NC_022979_p53 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 37665 38456
YP_008858547.1 NC_022979_p9 hypothetical protein phrog_747 unknown function unknown function 1 4559 4816
YP_008858578.1 NC_022979_p40 hypothetical protein phrog_1966 unknown function unknown function -1 31727 31999
YP_008858597.1 NC_022979_p59 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 40291 40806
YP_008858634.1 NC_022979_p96 hypothetical protein phrog_10520 unknown function unknown function -1 52060 52305
YP_008858546.1 NC_022979_p8 hypothetical protein phrog_1718 tail protein tail 1 4291 4551
YP_008858619.1 NC_022979_p81 hypothetical protein phrog_1720 unknown function unknown function -1 47627 47896
YP_008858542.1 NC_022979_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1684 1995
YP_008858575.1 NC_022979_p37 hypothetical protein phrog_754 minor tail protein tail 1 28751 29539
YP_008858611.1 NC_022979_p73 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44472 44654
YP_008858594.1 NC_022979_p56 hypothetical protein phrog_1503 unknown function unknown function -1 39353 39532
YP_008858581.1 NC_022979_p43 hypothetical protein phrog_2035 unknown function unknown function -1 32744 32923
YP_008858623.1 NC_022979_p85 hypothetical protein phrog_2093 unknown function unknown function -1 48445 48570
YP_008858603.1 NC_022979_p65 hypothetical protein phrog_1573 DNA methyltransferase other -1 41857 42237
YP_008858610.1 NC_022979_p72 hypothetical protein phrog_2184 unknown function unknown function -1 44178 44468
YP_008858590.1 NC_022979_p52 hypothetical protein phrog_499 unknown function unknown function -1 37486 37668
YP_008858567.1 NC_022979_p29 minor tail protein phrog_110 minor tail protein tail 1 21859 23661
YP_008858557.1 NC_022979_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13675 14124
YP_008858585.1 NC_022979_p47 DNA methyltransferase phrog_116 DNA methyltransferase other -1 33666 34493
YP_008858568.1 NC_022979_p30 hypothetical protein phrog_352 minor tail protein tail 1 23699 24145
YP_008858620.1 NC_022979_p82 hypothetical protein phrog_1387 unknown function unknown function -1 47893 48096
YP_008858595.1 NC_022979_p57 hypothetical protein phrog_474 phosphofructokinase other -1 39529 39927
YP_008858615.1 NC_022979_p77 hypothetical protein phrog_1809 unknown function unknown function -1 45966 46361
YP_008858604.1 NC_022979_p66 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42234 42500
YP_008858574.1 NC_022979_p36 hypothetical protein phrog_1560 unknown function unknown function 1 28560 28751
YP_008858550.1 NC_022979_p12 LysB phrog_102 endolysin lysis 1 6781 7749
YP_008858635.1 NC_022979_p97 hypothetical protein singleton unknown function unknown function -1 52307 52474
YP_008858551.1 NC_022979_p13 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7769 9457
YP_008858600.1 NC_022979_p62 hypothetical protein phrog_397 unknown function unknown function -1 41020 41280
YP_008858614.1 NC_022979_p76 hypothetical protein phrog_1584 unknown function unknown function -1 45655 45969
YP_008858612.1 NC_022979_p74 hypothetical protein phrog_5961 unknown function unknown function -1 44651 44809
YP_008858541.1 NC_022979_p3 hypothetical protein phrog_226 minor tail protein tail 1 1130 1570
YP_008858563.1 NC_022979_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16297 16674
YP_008858577.1 NC_022979_p39 integrase (S-Int) phrog_95 integrase integration and excision 1 30062 31606
YP_008858558.1 NC_022979_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 14124 14486
YP_008858587.1 NC_022979_p49 hypothetical protein phrog_1781 unknown function unknown function -1 36370 36600
YP_008858616.1 NC_022979_p78 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46403 46915
YP_008858593.1 NC_022979_p55 NrdC phrog_221 metallo-phosphoesterase other -1 38589 39356
YP_008858579.1 NC_022979_p41 hypothetical protein phrog_2387 nucleotide kinase other -1 31996 32385
YP_008858559.1 NC_022979_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14486 14881
YP_008858626.1 NC_022979_p88 hypothetical protein phrog_4631 unknown function unknown function -1 48902 49219
YP_008858548.1 NC_022979_p10 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4816 5397
YP_008858572.1 NC_022979_p34 carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 26657 28141
YP_008858592.1 NC_022979_p54 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 38449 38589
YP_008858598.1 NC_022979_p60 hypothetical protein phrog_1783 unknown function unknown function -1 40785 40949
YP_008858629.1 NC_022979_p91 hypothetical protein phrog_5970 unknown function unknown function -1 50345 50590
YP_008858571.1 NC_022979_p33 minor tail protein phrog_346 minor tail protein tail 1 24811 26664
YP_008858606.1 NC_022979_p68 hypothetical protein phrog_2507 unknown function unknown function -1 43321 43497
YP_008858617.1 NC_022979_p79 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47177 47476
YP_008858540.1 NC_022979_p2 hypothetical protein phrog_14140 unknown function unknown function 1 902 1093
YP_008858539.1 NC_022979_p1 hypothetical protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 598 894
YP_008858583.1 NC_022979_p45 hypothetical protein phrog_9480 unknown function unknown function -1 33003 33299
YP_008858631.1 NC_022979_p93 hypothetical protein phrog_828 unknown function unknown function -1 50911 51162