| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022983 |
Definition |
Mycobacterium phage Bernardo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus. |
DB of origin |
REFSEQ |
Length |
68196 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
67.42 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008858998.1 | NC_022983_p72 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 58117 | 58716 |
| YP_008858960.1 | NC_022983_p34 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 33538 | 33921 |
| YP_008859003.1 | NC_022983_p77 | hypothetical protein | phrog_6229 | unknown function | unknown function | 1 | 59747 | 60082 |
| YP_008858962.1 | NC_022983_p36 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34366 | 35019 |
| YP_008858995.1 | NC_022983_p69 | hypothetical protein | phrog_1016 | unknown function | unknown function | 1 | 57484 | 57732 |
| YP_008858967.1 | NC_022983_p41 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 37807 | 38130 |
| YP_008859000.1 | NC_022983_p74 | hypothetical protein | phrog_4885 | unknown function | unknown function | 1 | 59132 | 59389 |
| YP_008858943.1 | NC_022983_p17 | hypothetical protein | phrog_565 | holin | lysis | 1 | 14565 | 14999 |
| YP_008858980.1 | NC_022983_p54 | hypothetical protein | phrog_6400 | unknown function | unknown function | -1 | 47683 | 47958 |
| YP_008858983.1 | NC_022983_p57 | RepA | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 48888 | 51491 |
| YP_008859010.1 | NC_022983_p84 | hypothetical protein | phrog_6460 | unknown function | unknown function | -1 | 61703 | 61873 |
| YP_008858959.1 | NC_022983_p33 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 32309 | 33511 |
| YP_008859021.1 | NC_022983_p95 | hypothetical protein | phrog_2972 | unknown function | unknown function | -1 | 66547 | 66783 |
| YP_008858964.1 | NC_022983_p38 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 35612 | 36961 |
| YP_008858993.1 | NC_022983_p67 | hypothetical protein | phrog_982 | unknown function | unknown function | -1 | 56016 | 56285 |
| YP_008858939.1 | NC_022983_p13 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 10662 | 10868 |
| YP_008859026.1 | NC_022983_p100 | hypothetical protein | phrog_5930 | unknown function | unknown function | 1 | 67845 | 68147 |
| YP_008858954.1 | NC_022983_p28 | tapemeasure | phrog_934 | tail length tape measure protein | tail | 1 | 20395 | 26133 |
| YP_008858933.1 | NC_022983_p7 | hypothetical protein | phrog_6317 | unknown function | unknown function | -1 | 4615 | 4866 |
| YP_008858957.1 | NC_022983_p31 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 28703 | 30928 |
| YP_008859013.1 | NC_022983_p87 | hypothetical protein | phrog_2089 | unknown function | unknown function | -1 | 62485 | 62697 |
| YP_008859011.1 | NC_022983_p85 | hypothetical protein | phrog_4392 | unknown function | unknown function | -1 | 61870 | 62136 |
| YP_008859015.1 | NC_022983_p89 | hypothetical protein | phrog_6199 | unknown function | unknown function | -1 | 63002 | 63415 |
| YP_008858989.1 | NC_022983_p63 | hypothetical protein | phrog_993 | unknown function | unknown function | -1 | 54877 | 55359 |
| YP_008859016.1 | NC_022983_p90 | hypothetical protein | phrog_6428 | unknown function | unknown function | -1 | 63428 | 63643 |
| YP_008858969.1 | NC_022983_p43 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 38558 | 39283 |
| YP_008858975.1 | NC_022983_p49 | hypothetical protein | phrog_870 | unknown function | unknown function | -1 | 43215 | 43760 |
| YP_008858929.1 | NC_022983_p3 | hypothetical protein | phrog_6307 | unknown function | unknown function | 1 | 851 | 1072 |
| YP_008858970.1 | NC_022983_p44 | Xis | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39339 | 39575 |
| YP_008859007.1 | NC_022983_p81 | HNH domain protein | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 61125 | 61454 |
| YP_008858985.1 | NC_022983_p59 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 52211 | 54028 |
| YP_008858955.1 | NC_022983_p29 | hypothetical protein | phrog_838 | unknown function | unknown function | 1 | 26209 | 27666 |
| YP_008858978.1 | NC_022983_p52 | hypothetical protein | phrog_32917 | unknown function | unknown function | -1 | 45666 | 45890 |
| YP_008859023.1 | NC_022983_p97 | hypothetical protein | phrog_5733 | unknown function | unknown function | 1 | 67147 | 67401 |
| YP_008858979.1 | NC_022983_p53 | type III restriction helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 45887 | 47686 |
| YP_008858930.1 | NC_022983_p4 | PAPs reductase | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 1069 | 2151 |
| YP_008858972.1 | NC_022983_p46 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 40054 | 40776 |
| YP_008858984.1 | NC_022983_p58 | hypothetical protein | phrog_6342 | unknown function | unknown function | -1 | 51525 | 52214 |
| YP_008858974.1 | NC_022983_p48 | LysB | phrog_102 | endolysin | lysis | 1 | 42081 | 43145 |
| YP_008859018.1 | NC_022983_p92 | hypothetical protein | phrog_6469 | unknown function | unknown function | -1 | 64234 | 64701 |
| YP_008859014.1 | NC_022983_p88 | hypothetical protein | phrog_5355 | unknown function | unknown function | -1 | 62766 | 62927 |
| YP_008858956.1 | NC_022983_p30 | hypothetical protein | phrog_837 | minor tail protein | tail | 1 | 27558 | 28706 |
| YP_008858966.1 | NC_022983_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37532 | 37810 |
| YP_008858944.1 | NC_022983_p18 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 15002 | 15463 |
| YP_008859022.1 | NC_022983_p96 | hypothetical protein | phrog_4825 | unknown function | unknown function | 1 | 66961 | 67134 |
| YP_008858952.1 | NC_022983_p26 | tail assembly chaperone | phrog_5 | tail completion or Neck1 protein | connector | 1 | 19363 | 19776 |
| YP_008858968.1 | NC_022983_p42 | hypothetical protein | phrog_892 | tail fiber protein | tail | 1 | 38148 | 38558 |
| YP_008859025.1 | NC_022983_p99 | hypothetical protein | phrog_6432 | unknown function | unknown function | 1 | 67625 | 67780 |
| YP_008858935.1 | NC_022983_p9 | hypothetical protein | phrog_6276 | unknown function | unknown function | -1 | 5576 | 5872 |
| YP_008858963.1 | NC_022983_p37 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 35016 | 35615 |
| YP_008858961.1 | NC_022983_p35 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 33825 | 34355 |
| YP_008858951.1 | NC_022983_p25 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 19005 | 19379 |
| YP_008858992.1 | NC_022983_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55739 | 55939 |
| YP_008858988.1 | NC_022983_p62 | hypothetical protein | phrog_3025 | unknown function | unknown function | -1 | 54434 | 54880 |
| YP_008858973.1 | NC_022983_p47 | LysA | phrog_700 | endolysin | lysis | 1 | 40743 | 42080 |
| YP_008858938.1 | NC_022983_p12 | portal protein | phrog_859 | portal protein | head and packaging | 1 | 8230 | 10662 |
| YP_008859024.1 | NC_022983_p98 | hypothetical protein | phrog_6097 | unknown function | unknown function | 1 | 67398 | 67634 |
| YP_008858953.1 | NC_022983_p27 | tail assembly chaperone | phrog_1118 | tail assembly chaperone | tail | 1 | 19776 | 20369 |
| YP_008858948.1 | NC_022983_p22 | hypothetical protein | phrog_6514 | unknown function | unknown function | -1 | 17495 | 17659 |
| YP_008858927.1 | NC_022983_p1 | hypothetical protein | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 73 | 693 |
| YP_008859020.1 | NC_022983_p94 | hypothetical protein | phrog_1221 | unknown function | unknown function | -1 | 65361 | 66473 |
| YP_008859002.1 | NC_022983_p76 | hypothetical protein | phrog_6511 | unknown function | unknown function | 1 | 59584 | 59736 |
| YP_008858991.1 | NC_022983_p65 | hypothetical protein | phrog_6656 | unknown function | unknown function | -1 | 55512 | 55742 |
| YP_008859008.1 | NC_022983_p82 | hypothetical protein | phrog_4461 | unknown function | unknown function | -1 | 61447 | 61545 |
| YP_008858986.1 | NC_022983_p60 | hypothetical protein | phrog_6482 | unknown function | unknown function | -1 | 54028 | 54303 |
| YP_008858976.1 | NC_022983_p50 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43809 | 45419 |
| YP_008858981.1 | NC_022983_p55 | hypothetical protein | phrog_3892 | unknown function | unknown function | -1 | 48046 | 48375 |
| YP_008858940.1 | NC_022983_p14 | capsid protein | phrog_777 | major head protein | head and packaging | 1 | 11013 | 13040 |
| YP_008858937.1 | NC_022983_p11 | hypothetical protein | phrog_776 | portal protein | head and packaging | 1 | 6342 | 8240 |
| YP_008859019.1 | NC_022983_p93 | hypothetical protein | phrog_1010 | unknown function | unknown function | -1 | 64799 | 65287 |
| YP_008858990.1 | NC_022983_p64 | hypothetical protein | phrog_6735 | unknown function | unknown function | -1 | 55356 | 55475 |
| YP_008858946.1 | NC_022983_p20 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 15936 | 16268 |
| YP_008858949.1 | NC_022983_p23 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 17736 | 18476 |
| YP_008858996.1 | NC_022983_p70 | hypothetical protein | phrog_6404 | unknown function | unknown function | 1 | 57729 | 57959 |
| YP_008858936.1 | NC_022983_p10 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 5977 | 6312 |
| YP_008858942.1 | NC_022983_p16 | hypothetical protein | phrog_970 | unknown function | unknown function | 1 | 13963 | 14568 |
| YP_008858994.1 | NC_022983_p68 | hypothetical protein | phrog_996 | unknown function | unknown function | 1 | 56681 | 57448 |
| YP_008859001.1 | NC_022983_p75 | hypothetical protein | phrog_1306 | unknown function | unknown function | -1 | 59395 | 59529 |
| YP_008858999.1 | NC_022983_p73 | hypothetical protein | phrog_1031 | unknown function | unknown function | 1 | 58721 | 59125 |
| YP_008858950.1 | NC_022983_p24 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 18473 | 18994 |
| YP_008859017.1 | NC_022983_p91 | hypothetical protein | phrog_5411 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 63640 | 64020 |
| YP_008858971.1 | NC_022983_p45 | HTH DNA binding domain protein | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39572 | 40228 |
| YP_008858965.1 | NC_022983_p39 | HNH endonuclease domain protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36994 | 37440 |
| YP_008859009.1 | NC_022983_p83 | hypothetical protein | phrog_6304 | unknown function | unknown function | -1 | 61542 | 61706 |
| YP_008858947.1 | NC_022983_p21 | major tail subunit | phrog_792 | major tail protein | tail | 1 | 16356 | 17435 |
| YP_008859004.1 | NC_022983_p78 | hypothetical protein | phrog_928 | unknown function | unknown function | 1 | 60064 | 60591 |
| YP_008859012.1 | NC_022983_p86 | hypothetical protein | phrog_6338 | unknown function | unknown function | -1 | 62199 | 62402 |
| YP_008859006.1 | NC_022983_p80 | hypothetical protein | phrog_6691 | unknown function | unknown function | -1 | 60847 | 61128 |
| YP_008858982.1 | NC_022983_p56 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 48372 | 48845 |
| YP_008858997.1 | NC_022983_p71 | hypothetical protein | phrog_4938 | unknown function | unknown function | 1 | 57956 | 58120 |
| YP_008858931.1 | NC_022983_p5 | ParB-like nuclease domain protein | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2148 | 2717 |
| YP_008858934.1 | NC_022983_p8 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 4863 | 5441 |
| YP_008858987.1 | NC_022983_p61 | hypothetical protein | phrog_6936 | unknown function | unknown function | -1 | 54300 | 54437 |
| YP_008858928.1 | NC_022983_p2 | hypothetical protein | phrog_6919 | unknown function | unknown function | 1 | 690 | 854 |
| YP_008858958.1 | NC_022983_p32 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 30930 | 32312 |
| YP_008858945.1 | NC_022983_p19 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 15460 | 15939 |
| YP_008858977.1 | NC_022983_p51 | hypothetical protein | phrog_7519 | unknown function | unknown function | -1 | 45419 | 45676 |
| YP_008859005.1 | NC_022983_p79 | hypothetical protein | phrog_4974 | unknown function | unknown function | -1 | 60604 | 60792 |
| YP_008858941.1 | NC_022983_p15 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 13139 | 13948 |
| YP_008858932.1 | NC_022983_p6 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 2714 | 4474 |