Genomic map of Mycobacterium phage Bernardo (NC_022983)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_022983
Definition
Mycobacterium phage Bernardo, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus.
DB of origin
REFSEQ
Length
68196
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
100
%GC
67.42
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008858998.1 NC_022983_p72 hypothetical protein phrog_645 Rnase E DNA, RNA and nucleotide metabolism 1 58117 58716
YP_008858960.1 NC_022983_p34 hypothetical protein phrog_240 head protein head and packaging 1 33538 33921
YP_008859003.1 NC_022983_p77 hypothetical protein phrog_6229 unknown function unknown function 1 59747 60082
YP_008858962.1 NC_022983_p36 hypothetical protein phrog_282 unknown function unknown function 1 34366 35019
YP_008858995.1 NC_022983_p69 hypothetical protein phrog_1016 unknown function unknown function 1 57484 57732
YP_008858967.1 NC_022983_p41 hypothetical protein phrog_941 unknown function unknown function 1 37807 38130
YP_008859000.1 NC_022983_p74 hypothetical protein phrog_4885 unknown function unknown function 1 59132 59389
YP_008858943.1 NC_022983_p17 hypothetical protein phrog_565 holin lysis 1 14565 14999
YP_008858980.1 NC_022983_p54 hypothetical protein phrog_6400 unknown function unknown function -1 47683 47958
YP_008858983.1 NC_022983_p57 RepA phrog_906 DNA polymerase/primase DNA, RNA and nucleotide metabolism -1 48888 51491
YP_008859010.1 NC_022983_p84 hypothetical protein phrog_6460 unknown function unknown function -1 61703 61873
YP_008858959.1 NC_022983_p33 hypothetical protein phrog_416 minor tail protein tail 1 32309 33511
YP_008859021.1 NC_022983_p95 hypothetical protein phrog_2972 unknown function unknown function -1 66547 66783
YP_008858964.1 NC_022983_p38 hypothetical protein phrog_3329 unknown function unknown function 1 35612 36961
YP_008858993.1 NC_022983_p67 hypothetical protein phrog_982 unknown function unknown function -1 56016 56285
YP_008858939.1 NC_022983_p13 hypothetical protein phrog_2069 unknown function unknown function 1 10662 10868
YP_008859026.1 NC_022983_p100 hypothetical protein phrog_5930 unknown function unknown function 1 67845 68147
YP_008858954.1 NC_022983_p28 tapemeasure phrog_934 tail length tape measure protein tail 1 20395 26133
YP_008858933.1 NC_022983_p7 hypothetical protein phrog_6317 unknown function unknown function -1 4615 4866
YP_008858957.1 NC_022983_p31 hypothetical protein phrog_746 minor tail protein tail 1 28703 30928
YP_008859013.1 NC_022983_p87 hypothetical protein phrog_2089 unknown function unknown function -1 62485 62697
YP_008859011.1 NC_022983_p85 hypothetical protein phrog_4392 unknown function unknown function -1 61870 62136
YP_008859015.1 NC_022983_p89 hypothetical protein phrog_6199 unknown function unknown function -1 63002 63415
YP_008858989.1 NC_022983_p63 hypothetical protein phrog_993 unknown function unknown function -1 54877 55359
YP_008859016.1 NC_022983_p90 hypothetical protein phrog_6428 unknown function unknown function -1 63428 63643
YP_008858969.1 NC_022983_p43 hypothetical protein phrog_2804 virion structural protein head and packaging 1 38558 39283
YP_008858975.1 NC_022983_p49 hypothetical protein phrog_870 unknown function unknown function -1 43215 43760
YP_008858929.1 NC_022983_p3 hypothetical protein phrog_6307 unknown function unknown function 1 851 1072
YP_008858970.1 NC_022983_p44 Xis phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 39339 39575
YP_008859007.1 NC_022983_p81 HNH domain protein phrog_960 HNH endonuclease DNA, RNA and nucleotide metabolism -1 61125 61454
YP_008858985.1 NC_022983_p59 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 52211 54028
YP_008858955.1 NC_022983_p29 hypothetical protein phrog_838 unknown function unknown function 1 26209 27666
YP_008858978.1 NC_022983_p52 hypothetical protein phrog_32917 unknown function unknown function -1 45666 45890
YP_008859023.1 NC_022983_p97 hypothetical protein phrog_5733 unknown function unknown function 1 67147 67401
YP_008858979.1 NC_022983_p53 type III restriction helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 45887 47686
YP_008858930.1 NC_022983_p4 PAPs reductase phrog_2302 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 1069 2151
YP_008858972.1 NC_022983_p46 hypothetical protein phrog_636 unknown function unknown function -1 40054 40776
YP_008858984.1 NC_022983_p58 hypothetical protein phrog_6342 unknown function unknown function -1 51525 52214
YP_008858974.1 NC_022983_p48 LysB phrog_102 endolysin lysis 1 42081 43145
YP_008859018.1 NC_022983_p92 hypothetical protein phrog_6469 unknown function unknown function -1 64234 64701
YP_008859014.1 NC_022983_p88 hypothetical protein phrog_5355 unknown function unknown function -1 62766 62927
YP_008858956.1 NC_022983_p30 hypothetical protein phrog_837 minor tail protein tail 1 27558 28706
YP_008858966.1 NC_022983_p40 hypothetical protein singleton unknown function unknown function 1 37532 37810
YP_008858944.1 NC_022983_p18 hypothetical protein phrog_2272 unknown function unknown function 1 15002 15463
YP_008859022.1 NC_022983_p96 hypothetical protein phrog_4825 unknown function unknown function 1 66961 67134
YP_008858952.1 NC_022983_p26 tail assembly chaperone phrog_5 tail completion or Neck1 protein connector 1 19363 19776
YP_008858968.1 NC_022983_p42 hypothetical protein phrog_892 tail fiber protein tail 1 38148 38558
YP_008859025.1 NC_022983_p99 hypothetical protein phrog_6432 unknown function unknown function 1 67625 67780
YP_008858935.1 NC_022983_p9 hypothetical protein phrog_6276 unknown function unknown function -1 5576 5872
YP_008858963.1 NC_022983_p37 hypothetical protein phrog_282 unknown function unknown function 1 35016 35615
YP_008858961.1 NC_022983_p35 hypothetical protein phrog_948 unknown function unknown function 1 33825 34355
YP_008858951.1 NC_022983_p25 hypothetical protein phrog_901 unknown function unknown function 1 19005 19379
YP_008858992.1 NC_022983_p66 hypothetical protein singleton unknown function unknown function -1 55739 55939
YP_008858988.1 NC_022983_p62 hypothetical protein phrog_3025 unknown function unknown function -1 54434 54880
YP_008858973.1 NC_022983_p47 LysA phrog_700 endolysin lysis 1 40743 42080
YP_008858938.1 NC_022983_p12 portal protein phrog_859 portal protein head and packaging 1 8230 10662
YP_008859024.1 NC_022983_p98 hypothetical protein phrog_6097 unknown function unknown function 1 67398 67634
YP_008858953.1 NC_022983_p27 tail assembly chaperone phrog_1118 tail assembly chaperone tail 1 19776 20369
YP_008858948.1 NC_022983_p22 hypothetical protein phrog_6514 unknown function unknown function -1 17495 17659
YP_008858927.1 NC_022983_p1 hypothetical protein phrog_723 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 73 693
YP_008859020.1 NC_022983_p94 hypothetical protein phrog_1221 unknown function unknown function -1 65361 66473
YP_008859002.1 NC_022983_p76 hypothetical protein phrog_6511 unknown function unknown function 1 59584 59736
YP_008858991.1 NC_022983_p65 hypothetical protein phrog_6656 unknown function unknown function -1 55512 55742
YP_008859008.1 NC_022983_p82 hypothetical protein phrog_4461 unknown function unknown function -1 61447 61545
YP_008858986.1 NC_022983_p60 hypothetical protein phrog_6482 unknown function unknown function -1 54028 54303
YP_008858976.1 NC_022983_p50 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism -1 43809 45419
YP_008858981.1 NC_022983_p55 hypothetical protein phrog_3892 unknown function unknown function -1 48046 48375
YP_008858940.1 NC_022983_p14 capsid protein phrog_777 major head protein head and packaging 1 11013 13040
YP_008858937.1 NC_022983_p11 hypothetical protein phrog_776 portal protein head and packaging 1 6342 8240
YP_008859019.1 NC_022983_p93 hypothetical protein phrog_1010 unknown function unknown function -1 64799 65287
YP_008858990.1 NC_022983_p64 hypothetical protein phrog_6735 unknown function unknown function -1 55356 55475
YP_008858946.1 NC_022983_p20 hypothetical protein phrog_2525 unknown function unknown function 1 15936 16268
YP_008858949.1 NC_022983_p23 hypothetical protein phrog_783 head-tail adaptor connector 1 17736 18476
YP_008858996.1 NC_022983_p70 hypothetical protein phrog_6404 unknown function unknown function 1 57729 57959
YP_008858936.1 NC_022983_p10 hypothetical protein phrog_781 unknown function unknown function 1 5977 6312
YP_008858942.1 NC_022983_p16 hypothetical protein phrog_970 unknown function unknown function 1 13963 14568
YP_008858994.1 NC_022983_p68 hypothetical protein phrog_996 unknown function unknown function 1 56681 57448
YP_008859001.1 NC_022983_p75 hypothetical protein phrog_1306 unknown function unknown function -1 59395 59529
YP_008858999.1 NC_022983_p73 hypothetical protein phrog_1031 unknown function unknown function 1 58721 59125
YP_008858950.1 NC_022983_p24 hypothetical protein phrog_810 unknown function unknown function 1 18473 18994
YP_008859017.1 NC_022983_p91 hypothetical protein phrog_5411 HNH endonuclease DNA, RNA and nucleotide metabolism -1 63640 64020
YP_008858971.1 NC_022983_p45 HTH DNA binding domain protein phrog_955 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 39572 40228
YP_008858965.1 NC_022983_p39 HNH endonuclease domain protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36994 37440
YP_008859009.1 NC_022983_p83 hypothetical protein phrog_6304 unknown function unknown function -1 61542 61706
YP_008858947.1 NC_022983_p21 major tail subunit phrog_792 major tail protein tail 1 16356 17435
YP_008859004.1 NC_022983_p78 hypothetical protein phrog_928 unknown function unknown function 1 60064 60591
YP_008859012.1 NC_022983_p86 hypothetical protein phrog_6338 unknown function unknown function -1 62199 62402
YP_008859006.1 NC_022983_p80 hypothetical protein phrog_6691 unknown function unknown function -1 60847 61128
YP_008858982.1 NC_022983_p56 hypothetical protein phrog_1371 unknown function unknown function -1 48372 48845
YP_008858997.1 NC_022983_p71 hypothetical protein phrog_4938 unknown function unknown function 1 57956 58120
YP_008858931.1 NC_022983_p5 ParB-like nuclease domain protein phrog_2159 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 2148 2717
YP_008858934.1 NC_022983_p8 RuvC phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 4863 5441
YP_008858987.1 NC_022983_p61 hypothetical protein phrog_6936 unknown function unknown function -1 54300 54437
YP_008858928.1 NC_022983_p2 hypothetical protein phrog_6919 unknown function unknown function 1 690 854
YP_008858958.1 NC_022983_p32 hypothetical protein phrog_356 minor tail protein tail 1 30930 32312
YP_008858945.1 NC_022983_p19 hypothetical protein phrog_2344 unknown function unknown function 1 15460 15939
YP_008858977.1 NC_022983_p51 hypothetical protein phrog_7519 unknown function unknown function -1 45419 45676
YP_008859005.1 NC_022983_p79 hypothetical protein phrog_4974 unknown function unknown function -1 60604 60792
YP_008858941.1 NC_022983_p15 hypothetical protein phrog_779 unknown function unknown function 1 13139 13948
YP_008858932.1 NC_022983_p6 terminase large subunit phrog_38 terminase large subunit head and packaging 1 2714 4474