| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022988 |
Definition |
Mycobacterium phage Bruin, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
REFSEQ |
Length |
74210 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
141 |
%GC |
63.02 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008859528.1 | NC_022988_p91 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 55948 | 56106 |
| YP_008859543.1 | NC_022988_p106 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 62685 | 63059 |
| YP_008859519.1 | NC_022988_p82 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 50913 | 51278 |
| YP_008859447.1 | NC_022988_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4787 | 6343 |
| YP_008859568.1 | NC_022988_p131 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 70634 | 70840 |
| YP_008859454.1 | NC_022988_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10455 | 10859 |
| YP_008859469.1 | NC_022988_p32 | LysA | phrog_317 | endolysin | lysis | 1 | 29661 | 31163 |
| YP_008859573.1 | NC_022988_p136 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 72265 | 72477 |
| YP_008859498.1 | NC_022988_p61 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 42111 | 42239 |
| YP_008859453.1 | NC_022988_p16 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10097 | 10477 |
| YP_008859522.1 | NC_022988_p85 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 51983 | 52924 |
| YP_008859476.1 | NC_022988_p39 | hypothetical protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33819 | 34205 |
| YP_008859546.1 | NC_022988_p109 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 64334 | 64576 |
| YP_008859549.1 | NC_022988_p112 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 65667 | 65840 |
| YP_008859494.1 | NC_022988_p57 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 41172 | 41360 |
| YP_008859501.1 | NC_022988_p64 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43083 | 44051 |
| YP_008859477.1 | NC_022988_p40 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 34253 | 34471 |
| YP_008859547.1 | NC_022988_p110 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 64584 | 65546 |
| YP_008859515.1 | NC_022988_p78 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49020 | 50282 |
| YP_008859518.1 | NC_022988_p81 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 50699 | 50920 |
| YP_008859516.1 | NC_022988_p79 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50279 | 50467 |
| YP_008859478.1 | NC_022988_p41 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 34468 | 34596 |
| YP_008859480.1 | NC_022988_p43 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 34760 | 34996 |
| YP_008859542.1 | NC_022988_p105 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 62411 | 62674 |
| YP_008859523.1 | NC_022988_p86 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 53031 | 53399 |
| YP_008859561.1 | NC_022988_p124 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 68263 | 68652 |
| YP_008859474.1 | NC_022988_p37 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33155 | 33400 |
| YP_008859438.1 | NC_022988_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
| YP_008859569.1 | NC_022988_p132 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 70886 | 71461 |
| YP_008859486.1 | NC_022988_p49 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 37624 | 37863 |
| YP_008859479.1 | NC_022988_p42 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 34596 | 34763 |
| YP_008859530.1 | NC_022988_p93 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56559 | 57002 |
| YP_008859532.1 | NC_022988_p95 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57336 | 57878 |
| YP_008859509.1 | NC_022988_p72 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 46865 | 47098 |
| YP_008859555.1 | NC_022988_p118 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 67035 | 67172 |
| YP_008859457.1 | NC_022988_p20 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 12570 | 12851 |
| YP_008859551.1 | NC_022988_p114 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 66026 | 66280 |
| YP_008859502.1 | NC_022988_p65 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 44048 | 44461 |
| YP_008859574.1 | NC_022988_p137 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 72480 | 72737 |
| YP_008859570.1 | NC_022988_p133 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 71465 | 71848 |
| YP_008859441.1 | NC_022988_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 783 |
| YP_008859500.1 | NC_022988_p63 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 42757 | 43086 |
| YP_008859450.1 | NC_022988_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 8995 | 9186 |
| YP_008859521.1 | NC_022988_p84 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 51634 | 51828 |
| YP_008859565.1 | NC_022988_p128 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 69865 | 70212 |
| YP_008859567.1 | NC_022988_p130 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 70519 | 70644 |
| YP_008859572.1 | NC_022988_p135 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 72023 | 72268 |
| YP_008859534.1 | NC_022988_p97 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58899 | 59339 |
| YP_008859471.1 | NC_022988_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31543 | 31881 |
| YP_008859444.1 | NC_022988_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1551 | 1859 |
| YP_008859540.1 | NC_022988_p103 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61446 | 61736 |
| YP_008859527.1 | NC_022988_p90 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 55671 | 55931 |
| YP_008859564.1 | NC_022988_p127 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 69392 | 69850 |
| YP_008859554.1 | NC_022988_p117 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 66838 | 67038 |
| YP_008859472.1 | NC_022988_p35 | LysB | phrog_102 | endolysin | lysis | 1 | 31878 | 32735 |
| YP_008859443.1 | NC_022988_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1309 | 1551 |
| YP_008859496.1 | NC_022988_p59 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 41731 | 41838 |
| YP_008859489.1 | NC_022988_p52 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 39366 | 39464 |
| YP_008859473.1 | NC_022988_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32732 | 33148 |
| YP_008859550.1 | NC_022988_p113 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 65833 | 66045 |
| YP_008859451.1 | NC_022988_p14 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9186 | 9752 |
| YP_008859492.1 | NC_022988_p55 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 40442 | 40588 |
| YP_008859448.1 | NC_022988_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6346 | 7347 |
| YP_008859452.1 | NC_022988_p15 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 9765 | 10100 |
| YP_008859462.1 | NC_022988_p25 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21457 | 22290 |
| YP_008859506.1 | NC_022988_p69 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 45950 | 46318 |
| YP_008859482.1 | NC_022988_p45 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 35223 | 35369 |
| YP_008859539.1 | NC_022988_p102 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 61058 | 61393 |
| YP_008859533.1 | NC_022988_p96 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 57875 | 58906 |
| YP_008859575.1 | NC_022988_p138 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 72740 | 72931 |
| YP_008859557.1 | NC_022988_p120 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 67348 | 67479 |
| YP_008859512.1 | NC_022988_p75 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 47812 | 48048 |
| YP_008859553.1 | NC_022988_p116 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 66687 | 66854 |
| YP_008859495.1 | NC_022988_p58 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 41407 | 41712 |
| YP_008859576.1 | NC_022988_p139 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 72996 | 73343 |
| YP_008859458.1 | NC_022988_p21 | HNH endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 12841 | 13356 |
| YP_008859461.1 | NC_022988_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19853 | 21448 |
| YP_008859468.1 | NC_022988_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29303 | 29587 |
| YP_008859467.1 | NC_022988_p30 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28985 | 29170 |
| YP_008859497.1 | NC_022988_p60 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 41846 | 42145 |
| YP_008859541.1 | NC_022988_p104 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 62190 | 62414 |
| YP_008859552.1 | NC_022988_p115 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 66229 | 66690 |
| YP_008859475.1 | NC_022988_p38 | Lsr2-like protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 33637 | 33816 |
| YP_008859524.1 | NC_022988_p87 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 53372 | 53494 |
| YP_008859558.1 | NC_022988_p121 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 67490 | 67624 |
| YP_008859544.1 | NC_022988_p107 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 63062 | 63541 |
| YP_008859460.1 | NC_022988_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18120 | 19781 |
| YP_008859491.1 | NC_022988_p54 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 39595 | 40440 |
| YP_008859445.1 | NC_022988_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1904 | 4567 |
| YP_008859484.1 | NC_022988_p47 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 36051 | 36374 |
| YP_008859487.1 | NC_022988_p50 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 37841 | 38614 |
| YP_008859463.1 | NC_022988_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22307 | 24703 |
| YP_008859446.1 | NC_022988_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4579 | 4800 |
| YP_008859465.1 | NC_022988_p28 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27538 | 28500 |
| YP_008859455.1 | NC_022988_p18 | major capsid protein | phrog_476 | major tail protein | tail | 1 | 10886 | 11857 |
| YP_008859488.1 | NC_022988_p51 | hypothetical protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 38709 | 39149 |
| YP_008859535.1 | NC_022988_p98 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 59428 | 60234 |
| YP_008859513.1 | NC_022988_p76 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 48045 | 48695 |
| YP_008859456.1 | NC_022988_p19 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 11977 | 12438 |
| YP_008859536.1 | NC_022988_p99 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 60236 | 60433 |
| YP_008859548.1 | NC_022988_p111 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 65543 | 65680 |
| YP_008859531.1 | NC_022988_p94 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 57004 | 57339 |
| YP_008859499.1 | NC_022988_p62 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42428 | 42760 |
| YP_008859459.1 | NC_022988_p22 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 13357 | 18090 |
| YP_008859556.1 | NC_022988_p119 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 67169 | 67348 |
| YP_008859526.1 | NC_022988_p89 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 54853 | 55674 |
| YP_008859514.1 | NC_022988_p77 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48677 | 49027 |
| YP_008859481.1 | NC_022988_p44 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 34989 | 35204 |
| YP_008859485.1 | NC_022988_p48 | integrase (Y-Int) | phrog_1 | integrase | integration and excision | 1 | 36604 | 37485 |
| YP_008859449.1 | NC_022988_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7435 | 8928 |
| YP_008859577.1 | NC_022988_p140 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 73418 | 73639 |
| YP_008859559.1 | NC_022988_p122 | hypothetical protein | phrog_6448 | unknown function | unknown function | 1 | 67626 | 67739 |
| YP_008859529.1 | NC_022988_p92 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56103 | 56555 |
| YP_008859483.1 | NC_022988_p46 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 35369 | 35764 |
| YP_008859525.1 | NC_022988_p88 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 53491 | 54816 |
| YP_008859470.1 | NC_022988_p33 | holin | phrog_526 | holin | lysis | 1 | 31167 | 31550 |
| YP_008859563.1 | NC_022988_p126 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 69027 | 69395 |
| YP_008859537.1 | NC_022988_p100 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 60430 | 60786 |
| YP_008859442.1 | NC_022988_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 776 | 1237 |
| YP_008859538.1 | NC_022988_p101 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 60787 | 61077 |
| YP_008859508.1 | NC_022988_p71 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 46689 | 46868 |
| YP_008859562.1 | NC_022988_p125 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 68770 | 69030 |
| YP_008859503.1 | NC_022988_p66 | Erf | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44454 | 45176 |
| YP_008859505.1 | NC_022988_p68 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 45480 | 45950 |
| YP_008859511.1 | NC_022988_p74 | HNH domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47505 | 47822 |
| YP_008859510.1 | NC_022988_p73 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 47095 | 47508 |
| YP_008859517.1 | NC_022988_p80 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 50449 | 50724 |
| YP_008859464.1 | NC_022988_p27 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24700 | 27537 |
| YP_008859520.1 | NC_022988_p83 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51275 | 51637 |
| YP_008859571.1 | NC_022988_p134 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 71853 | 72026 |
| YP_008859439.1 | NC_022988_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| YP_008859504.1 | NC_022988_p67 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 45169 | 45480 |
| YP_008859466.1 | NC_022988_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28570 | 28998 |
| YP_008859578.1 | NC_022988_p141 | hypothetical protein | phrog_8627 | unknown function | unknown function | 1 | 73684 | 74097 |
| YP_008859545.1 | NC_022988_p108 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 63552 | 64337 |
| YP_008859440.1 | NC_022988_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| YP_008859560.1 | NC_022988_p123 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 68003 | 68266 |
| YP_008859490.1 | NC_022988_p53 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 39461 | 39598 |
| YP_008859507.1 | NC_022988_p70 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46315 | 46689 |
| YP_008859493.1 | NC_022988_p56 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 40585 | 40863 |
| YP_008859566.1 | NC_022988_p129 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 70196 | 70513 |