| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_022989 |
Definition |
Lactobacillus phage LL-Ku, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus. |
DB of origin |
REFSEQ |
Length |
31080 |
Host Name |
Lactobacillus delbrueckii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
41.6 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008859627.1 | NC_022989_p49 | holin | phrog_1299 | holin | lysis | 1 | 29398 | 29706 |
| YP_008859601.1 | NC_022989_p23 | hypothetical protein | phrog_15036 | unknown function | unknown function | 1 | 19066 | 19233 |
| YP_008859617.1 | NC_022989_p39 | hypothetical protein | phrog_888 | unknown function | unknown function | 1 | 26328 | 26723 |
| YP_008859582.1 | NC_022989_p4 | truncated GIY-YIG endonuclease | singleton | unknown function | unknown function | 1 | 3034 | 3177 |
| YP_008859591.1 | NC_022989_p13 | major tail protein | phrog_88 | major tail protein | tail | 1 | 8339 | 8911 |
| YP_008859612.1 | NC_022989_p34 | hypothetical protein | phrog_13519 | unknown function | unknown function | 1 | 23662 | 23814 |
| YP_008859629.1 | NC_022989_p51 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 30605 | 30985 |
| YP_008859588.1 | NC_022989_p10 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 7214 | 7567 |
| YP_008859621.1 | NC_022989_p43 | hypothetical protein | phrog_13668 | unknown function | unknown function | 1 | 27356 | 27622 |
| YP_008859581.1 | NC_022989_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1355 | 3034 |
| YP_008859583.1 | NC_022989_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3729 | 4943 |
| YP_008859587.1 | NC_022989_p9 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 6907 | 7203 |
| YP_008859619.1 | NC_022989_p41 | hypothetical protein | phrog_15640 | unknown function | unknown function | 1 | 26958 | 27170 |
| YP_008859596.1 | NC_022989_p18 | glycerophosphoryl diesterphosphodiesterase | phrog_13515 | phosphodiesterase | other | 1 | 13497 | 16133 |
| YP_008859605.1 | NC_022989_p27 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 20442 | 21047 |
| YP_008859603.1 | NC_022989_p25 | hypothetical protein | phrog_14315 | unknown function | unknown function | 1 | 19858 | 20127 |
| YP_008859613.1 | NC_022989_p35 | DNA replication protein | phrog_678 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 23883 | 24674 |
| YP_008859584.1 | NC_022989_p6 | ClpP protease | phrog_80 | head maturation protease | head and packaging | 1 | 4933 | 5538 |
| YP_008859585.1 | NC_022989_p7 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 5541 | 6728 |
| YP_008859626.1 | NC_022989_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29139 | 29273 |
| YP_008859598.1 | NC_022989_p20 | hypothetical protein | phrog_13632 | unknown function | unknown function | 1 | 18109 | 18468 |
| YP_008859579.1 | NC_022989_p1 | hypothetical protein | phrog_842 | beta-glucosyl-HMC-alpha-glucosyltransferase | other | 1 | 90 | 938 |
| YP_008859600.1 | NC_022989_p22 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 18864 | 19139 |
| YP_008859618.1 | NC_022989_p40 | hypothetical protein | phrog_21051 | unknown function | unknown function | 1 | 26750 | 26971 |
| YP_008859589.1 | NC_022989_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7567 | 7998 |
| YP_008859623.1 | NC_022989_p45 | hypothetical protein | phrog_15049 | unknown function | unknown function | 1 | 27855 | 28103 |
| YP_008859604.1 | NC_022989_p26 | hypothetical protein | phrog_6244 | unknown function | unknown function | 1 | 20114 | 20437 |
| YP_008859597.1 | NC_022989_p19 | antireceptor | phrog_1067 | minor head protein | head and packaging | 1 | 16153 | 18096 |
| YP_008859608.1 | NC_022989_p30 | hypothetical protein | phrog_7566 | unknown function | unknown function | 1 | 22028 | 22315 |
| YP_008859586.1 | NC_022989_p8 | hypothetical protein | phrog_6865 | unknown function | unknown function | 1 | 6747 | 6914 |
| YP_008859595.1 | NC_022989_p17 | hypothetical protein | phrog_1084 | unknown function | unknown function | 1 | 13145 | 13483 |
| YP_008859611.1 | NC_022989_p33 | hypothetical protein | phrog_25027 | unknown function | unknown function | 1 | 23352 | 23660 |
| YP_008859593.1 | NC_022989_p15 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9526 | 12432 |
| YP_008859590.1 | NC_022989_p12 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 7991 | 8326 |
| YP_008859609.1 | NC_022989_p31 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22308 | 22799 |
| YP_008859614.1 | NC_022989_p36 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 24640 | 25458 |
| YP_008859592.1 | NC_022989_p14 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 8931 | 9281 |
| YP_008859624.1 | NC_022989_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28246 | 28587 |
| YP_008859622.1 | NC_022989_p44 | hypothetical protein | phrog_14354 | unknown function | unknown function | 1 | 27619 | 27858 |
| YP_008859625.1 | NC_022989_p47 | hypothetical protein | phrog_14005 | unknown function | unknown function | 1 | 28593 | 28766 |
| YP_008859580.1 | NC_022989_p2 | hypothetical protein | phrog_13845 | unknown function | unknown function | 1 | 1000 | 1365 |
| YP_008859606.1 | NC_022989_p28 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 21037 | 21498 |
| YP_008859616.1 | NC_022989_p38 | hypothetical protein | phrog_9702 | unknown function | unknown function | 1 | 26122 | 26310 |
| YP_008859610.1 | NC_022989_p32 | Holliday junction resolvase | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 22796 | 23161 |
| YP_008859620.1 | NC_022989_p42 | hypothetical protein | phrog_16790 | unknown function | unknown function | 1 | 27170 | 27325 |
| YP_008859607.1 | NC_022989_p29 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 21508 | 22047 |
| YP_008859628.1 | NC_022989_p50 | lysin | phrog_291 | endolysin | lysis | 1 | 29699 | 30601 |
| YP_008859594.1 | NC_022989_p16 | tail component | phrog_33 | distal tail protein Dit | tail | 1 | 12444 | 13148 |
| YP_008859599.1 | NC_022989_p21 | hypothetical protein | phrog_31868 | unknown function | unknown function | 1 | 18380 | 18592 |
| YP_008859615.1 | NC_022989_p37 | hypothetical protein | phrog_37154 | unknown function | unknown function | 1 | 25591 | 25989 |
| YP_008859602.1 | NC_022989_p24 | hypothetical protein | phrog_11717 | unknown function | unknown function | 1 | 19226 | 19768 |