Genomic map of Pseudomonas phage PPpW-4 (NC_023005)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023005
Definition
Pseudomonas phage PPpW-4 DNA, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Phutvirus; Pseudomonas virus PPpW4.
DB of origin
REFSEQ
Length
41386
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
56.77
Number of singletons
6
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008873151.1 NC_023005_p25 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 13762 15489
YP_008873140.1 NC_023005_p14 hypothetical protein phrog_13790 DNA ligase DNA, RNA and nucleotide metabolism 1 9042 9476
YP_008873128.1 NC_023005_p2 hypothetical protein phrog_3199 unknown function unknown function 1 1345 1590
YP_008873136.1 NC_023005_p10 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4572 7244
YP_008873154.1 NC_023005_p28 hypothetical protein singleton unknown function unknown function 1 17895 18212
YP_008873134.1 NC_023005_p8 hypothetical protein phrog_7066 unknown function unknown function 1 3851 4126
YP_008873141.1 NC_023005_p15 hypothetical protein singleton unknown function unknown function 1 9508 9642
YP_008873150.1 NC_023005_p24 nucleotidyl transferase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 13177 13758
YP_008873131.1 NC_023005_p5 hypothetical protein singleton unknown function unknown function 1 2382 2525
YP_008873144.1 NC_023005_p18 hypothetical protein phrog_2251 unknown function unknown function 1 10582 10785
YP_008873135.1 NC_023005_p9 hypothetical protein phrog_9238 unknown function unknown function 1 4123 4428
YP_008873152.1 NC_023005_p26 hypothetical protein phrog_9727 unknown function unknown function 1 15489 15680
YP_008873155.1 NC_023005_p29 hypothetical protein phrog_1334 unknown function unknown function 1 18209 18418
YP_008873145.1 NC_023005_p19 hypothetical protein singleton unknown function unknown function 1 10782 11072
YP_008873170.1 NC_023005_p44 hypothetical protein phrog_342 internal virion protein with endolysin domain head and packaging 1 31277 35275
YP_008873130.1 NC_023005_p4 hypothetical protein phrog_18517 unknown function unknown function 1 1978 2298
YP_008873169.1 NC_023005_p43 internal virion protein C phrog_1339 internal virion protein head and packaging 1 29057 31267
YP_008873142.1 NC_023005_p16 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 9706 10422
YP_008873160.1 NC_023005_p34 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 20400 20660
YP_008873171.1 NC_023005_p45 tail fiber protein phrog_6256 tail fiber protein tail 1 35341 37785
YP_008873176.1 NC_023005_p50 hypothetical protein singleton unknown function unknown function 1 40762 40974
YP_008873153.1 NC_023005_p27 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15750 17879
YP_008873166.1 NC_023005_p40 tail tubular protein B phrog_457 tail protein tail 1 25645 28029
YP_008873132.1 NC_023005_p6 hypothetical protein phrog_8679 unknown function unknown function 1 2605 3147
YP_008873149.1 NC_023005_p23 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 12613 13080
YP_008873175.1 NC_023005_p49 terminase, large subunit phrog_38 terminase large subunit head and packaging 1 38796 40559
YP_008873174.1 NC_023005_p48 endopeptidase phrog_1327 Rz-like spanin lysis 1 38261 38698
YP_008873164.1 NC_023005_p38 Ig domain-containing protein phrog_215 structural protein with Ig domain head and packaging 1 24731 24979
YP_008873159.1 NC_023005_p33 hypothetical protein phrog_3986 unknown function unknown function 1 19968 20390
YP_008873148.1 NC_023005_p22 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 12163 12603
YP_008873146.1 NC_023005_p20 hypothetical protein phrog_5138 unknown function unknown function 1 11069 11422
YP_008873163.1 NC_023005_p37 major capsid protein phrog_267 major head protein head and packaging 1 23694 24719
YP_008873138.1 NC_023005_p12 hypothetical protein phrog_34030 unknown function unknown function 1 7587 7850
YP_008873156.1 NC_023005_p30 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 18415 19347
YP_008873173.1 NC_023005_p47 terminase, small subunit phrog_1351 terminase small subunit head and packaging 1 38007 38264
YP_008873137.1 NC_023005_p11 hypothetical protein phrog_13307 unknown function unknown function 1 7306 7545
YP_008873157.1 NC_023005_p31 hypothetical protein phrog_1447 unknown function unknown function 1 19454 19702
YP_008873172.1 NC_023005_p46 type II holin phrog_920 holin lysis 1 37799 38014
YP_008873168.1 NC_023005_p42 internal virion protein B phrog_805 internal virion protein head and packaging 1 28508 29047
YP_008873143.1 NC_023005_p17 bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 10419 10589
YP_008873167.1 NC_023005_p41 internal virion protein A phrog_308 internal virion protein head and packaging 1 28040 28477
YP_008873158.1 NC_023005_p32 hypothetical protein phrog_1391 unknown function unknown function 1 19705 19971
YP_008873165.1 NC_023005_p39 tail tubular protein A phrog_446 tail protein tail 1 25047 25634
YP_008873162.1 NC_023005_p36 capsid assembly protein phrog_1052 head assembly head and packaging 1 22623 23594
YP_008873147.1 NC_023005_p21 single-stand DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 11492 12163
YP_008873133.1 NC_023005_p7 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 3144 3854
YP_008873139.1 NC_023005_p13 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7850 8935
YP_008873127.1 NC_023005_p1 hypothetical protein singleton unknown function unknown function 1 1164 1343
YP_008873129.1 NC_023005_p3 hypothetical protein phrog_13431 virion structural protein head and packaging 1 1662 1991
YP_008873161.1 NC_023005_p35 head-tail connector protein phrog_449 head-tail adaptor connector 1 20958 22562