| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023005 |
Definition |
Pseudomonas phage PPpW-4 DNA, complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Phutvirus; Pseudomonas virus PPpW4. |
DB of origin |
REFSEQ |
Length |
41386 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
56.77 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_008873151.1 | NC_023005_p25 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 13762 | 15489 |
| YP_008873140.1 | NC_023005_p14 | hypothetical protein | phrog_13790 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 9042 | 9476 |
| YP_008873128.1 | NC_023005_p2 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 1345 | 1590 |
| YP_008873136.1 | NC_023005_p10 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4572 | 7244 |
| YP_008873154.1 | NC_023005_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17895 | 18212 |
| YP_008873134.1 | NC_023005_p8 | hypothetical protein | phrog_7066 | unknown function | unknown function | 1 | 3851 | 4126 |
| YP_008873141.1 | NC_023005_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9508 | 9642 |
| YP_008873150.1 | NC_023005_p24 | nucleotidyl transferase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 13177 | 13758 |
| YP_008873131.1 | NC_023005_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2382 | 2525 |
| YP_008873144.1 | NC_023005_p18 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 10582 | 10785 |
| YP_008873135.1 | NC_023005_p9 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 4123 | 4428 |
| YP_008873152.1 | NC_023005_p26 | hypothetical protein | phrog_9727 | unknown function | unknown function | 1 | 15489 | 15680 |
| YP_008873155.1 | NC_023005_p29 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 18209 | 18418 |
| YP_008873145.1 | NC_023005_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10782 | 11072 |
| YP_008873170.1 | NC_023005_p44 | hypothetical protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31277 | 35275 |
| YP_008873130.1 | NC_023005_p4 | hypothetical protein | phrog_18517 | unknown function | unknown function | 1 | 1978 | 2298 |
| YP_008873169.1 | NC_023005_p43 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 29057 | 31267 |
| YP_008873142.1 | NC_023005_p16 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 9706 | 10422 |
| YP_008873160.1 | NC_023005_p34 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20400 | 20660 |
| YP_008873171.1 | NC_023005_p45 | tail fiber protein | phrog_6256 | tail fiber protein | tail | 1 | 35341 | 37785 |
| YP_008873176.1 | NC_023005_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40762 | 40974 |
| YP_008873153.1 | NC_023005_p27 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15750 | 17879 |
| YP_008873166.1 | NC_023005_p40 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 25645 | 28029 |
| YP_008873132.1 | NC_023005_p6 | hypothetical protein | phrog_8679 | unknown function | unknown function | 1 | 2605 | 3147 |
| YP_008873149.1 | NC_023005_p23 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 12613 | 13080 |
| YP_008873175.1 | NC_023005_p49 | terminase, large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 38796 | 40559 |
| YP_008873174.1 | NC_023005_p48 | endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 38261 | 38698 |
| YP_008873164.1 | NC_023005_p38 | Ig domain-containing protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 24731 | 24979 |
| YP_008873159.1 | NC_023005_p33 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 19968 | 20390 |
| YP_008873148.1 | NC_023005_p22 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12163 | 12603 |
| YP_008873146.1 | NC_023005_p20 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 11069 | 11422 |
| YP_008873163.1 | NC_023005_p37 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23694 | 24719 |
| YP_008873138.1 | NC_023005_p12 | hypothetical protein | phrog_34030 | unknown function | unknown function | 1 | 7587 | 7850 |
| YP_008873156.1 | NC_023005_p30 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18415 | 19347 |
| YP_008873173.1 | NC_023005_p47 | terminase, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 38007 | 38264 |
| YP_008873137.1 | NC_023005_p11 | hypothetical protein | phrog_13307 | unknown function | unknown function | 1 | 7306 | 7545 |
| YP_008873157.1 | NC_023005_p31 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19454 | 19702 |
| YP_008873172.1 | NC_023005_p46 | type II holin | phrog_920 | holin | lysis | 1 | 37799 | 38014 |
| YP_008873168.1 | NC_023005_p42 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 28508 | 29047 |
| YP_008873143.1 | NC_023005_p17 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 10419 | 10589 |
| YP_008873167.1 | NC_023005_p41 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 28040 | 28477 |
| YP_008873158.1 | NC_023005_p32 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 19705 | 19971 |
| YP_008873165.1 | NC_023005_p39 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25047 | 25634 |
| YP_008873162.1 | NC_023005_p36 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 22623 | 23594 |
| YP_008873147.1 | NC_023005_p21 | single-stand DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 11492 | 12163 |
| YP_008873133.1 | NC_023005_p7 | hypothetical protein | phrog_61 | 2OG-Fe(II) oxygenase | moron, auxiliary metabolic gene and host takeover | 1 | 3144 | 3854 |
| YP_008873139.1 | NC_023005_p13 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7850 | 8935 |
| YP_008873127.1 | NC_023005_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1164 | 1343 |
| YP_008873129.1 | NC_023005_p3 | hypothetical protein | phrog_13431 | virion structural protein | head and packaging | 1 | 1662 | 1991 |
| YP_008873161.1 | NC_023005_p35 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20958 | 22562 |