Genomic map of Pseudomonas phage PPpW-3 (NC_023006)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023006
Definition
Pseudomonas phage PPpW-3 DNA, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
43564
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
61.11
Number of singletons
16
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008873229.1 NC_023006_p53 hypothetical protein phrog_32430 tRNA splicing ligase RtcB DNA, RNA and nucleotide metabolism 1 37099 37512
YP_008873195.1 NC_023006_p19 tail tube protein phrog_55 head closure connector 1 15592 16098
YP_008873198.1 NC_023006_p22 tail protein GpU phrog_76 tail protein tail 1 18846 19811
YP_008873197.1 NC_023006_p21 tail protein phrog_28 tail length tape measure protein tail 1 16570 18849
YP_008873179.1 NC_023006_p3 hypothetical protein phrog_5774 head-tail joining connector 1 2651 3205
YP_008873215.1 NC_023006_p39 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 30822 31211
YP_008873189.1 NC_023006_p13 baseplate J-like protein phrog_6 baseplate wedge subunit tail 1 10092 10997
YP_008873238.1 NC_023006_p62 hypothetical protein phrog_836 late transcriptional activator transcription regulation 1 41357 41791
YP_008873177.1 NC_023006_p1 terminase, small subunit phrog_57 terminase small subunit head and packaging 1 89 607
YP_008873184.1 NC_023006_p8 hypothetical protein phrog_82 head closure Hc1 connector 1 7636 7977
YP_008873232.1 NC_023006_p56 hypothetical protein phrog_36830 unknown function unknown function 1 38314 38547
YP_008873226.1 NC_023006_p50 hypothetical protein phrog_11642 unknown function unknown function 1 33864 34121
YP_008873192.1 NC_023006_p16 hypothetical protein phrog_20339 unknown function unknown function 1 13256 13435
YP_008873193.1 NC_023006_p17 tail collar domain-containing protein phrog_8763 tail protein tail 1 13513 14025
YP_008873188.1 NC_023006_p12 baseplate assembly protein with lysozyme phrog_43 baseplate wedge subunit tail 1 9744 10091
YP_008873201.1 NC_023006_p25 integrase family protein phrog_1 integrase integration and excision 1 21439 22683
YP_008873204.1 NC_023006_p28 hypothetical protein phrog_54 DksA-like zinc-finger protein other -1 23810 24016
YP_008873213.1 NC_023006_p37 hypothetical protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 29606 30544
YP_008873185.1 NC_023006_p9 minor tail protein Z phrog_27 tail completion or Neck1 protein connector 1 7964 8518
YP_008873202.1 NC_023006_p26 hypothetical protein phrog_2340 endonuclease DNA, RNA and nucleotide metabolism -1 22723 23202
YP_008873224.1 NC_023006_p48 hypothetical protein phrog_16764 unknown function unknown function 1 33385 33588
YP_008873200.1 NC_023006_p24 transcriptional regulator phrog_52 tail protein tail 1 20013 21062
YP_008873223.1 NC_023006_p47 hypothetical protein singleton unknown function unknown function 1 33050 33388
YP_008873214.1 NC_023006_p38 hypothetical protein singleton unknown function unknown function 1 30541 30825
YP_008873237.1 NC_023006_p61 hypothetical protein singleton unknown function unknown function 1 40797 41021
YP_008873181.1 NC_023006_p5 major capsid protein and peptidase U35 phrog_617 major head protein head and packaging 1 4809 6917
YP_008873221.1 NC_023006_p45 hypothetical protein singleton unknown function unknown function 1 32389 32895
YP_008873219.1 NC_023006_p43 hypothetical protein singleton unknown function unknown function 1 32019 32207
YP_008873212.1 NC_023006_p36 hypothetical protein singleton unknown function unknown function 1 29415 29609
YP_008873180.1 NC_023006_p4 portal protein phrog_21 portal protein head and packaging 1 3206 4822
YP_008873206.1 NC_023006_p30 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 24464 24697
YP_008873178.1 NC_023006_p2 terminase, large subunit phrog_15 terminase large subunit head and packaging 1 600 2669
YP_008873227.1 NC_023006_p51 primase phrog_2249 DNA primase DNA, RNA and nucleotide metabolism 1 34146 36419
YP_008873203.1 NC_023006_p27 single-stand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23268 23756
YP_008873235.1 NC_023006_p59 hypothetical protein singleton unknown function unknown function 1 39861 40412
YP_008873241.1 NC_023006_p65 lysozyme phrog_7 endolysin lysis 1 42401 42907
YP_008873182.1 NC_023006_p6 hypothetical protein phrog_3281 endonuclease VII DNA, RNA and nucleotide metabolism 1 6972 7277
YP_008873225.1 NC_023006_p49 hypothetical protein phrog_14341 transcriptional repressor transcription regulation 1 33676 33867
YP_008873222.1 NC_023006_p46 hypothetical protein phrog_4779 transcriptional regulator transcription regulation 1 32892 33053
YP_008873242.1 NC_023006_p66 hypothetical protein phrog_312 Rz-like spanin lysis 1 42904 43437
YP_008873240.1 NC_023006_p64 hypothetical protein phrog_2508 holin lysis 1 42111 42404
YP_008873194.1 NC_023006_p18 tail sheath protein phrog_23 tail sheath tail 1 14156 15592
YP_008873217.1 NC_023006_p41 hypothetical protein singleton unknown function unknown function 1 31429 31584
YP_008873183.1 NC_023006_p7 hypothetical protein phrog_5707 unknown function unknown function 1 7289 7636
YP_008873234.1 NC_023006_p58 hypothetical protein singleton unknown function unknown function 1 39348 39572
YP_008873207.1 NC_023006_p31 replicative DNA helicase phrog_1366 unknown function unknown function -1 24719 25702
YP_008873236.1 NC_023006_p60 hypothetical protein singleton unknown function unknown function 1 40490 40792
YP_008873233.1 NC_023006_p57 hypothetical protein singleton unknown function unknown function 1 38558 39259
YP_008873190.1 NC_023006_p14 tail protein I phrog_48 tail protein tail 1 10990 11610
YP_008873209.1 NC_023006_p33 hypothetical protein singleton unknown function unknown function -1 26906 27337
YP_008873218.1 NC_023006_p42 hypothetical protein singleton unknown function unknown function 1 31581 31919
YP_008873231.1 NC_023006_p55 hypothetical protein singleton unknown function unknown function 1 38096 38308
YP_008873191.1 NC_023006_p15 tail-collar fibre protein phrog_988 tail protein tail 1 11607 13259
YP_008873187.1 NC_023006_p11 baseplate assembly protein V phrog_11 baseplate spike tail 1 9093 9701
YP_008873196.1 NC_023006_p20 hypothetical protein phrog_166 tail protein tail 1 16165 16446
YP_008873186.1 NC_023006_p10 hypothetical protein phrog_1072 unknown function unknown function 1 8515 9096
YP_008873199.1 NC_023006_p23 tail protein X phrog_46 baseplate hub tail 1 19813 20022
YP_008873210.1 NC_023006_p34 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 27455 28864
YP_008873239.1 NC_023006_p63 holin phrog_2359 holin lysis 1 41791 42114
YP_008873216.1 NC_023006_p40 hypothetical protein phrog_7644 unknown function unknown function 1 31208 31432
YP_008873228.1 NC_023006_p52 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36481 37035
YP_008873208.1 NC_023006_p32 hypothetical protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 25731 26852
YP_008873211.1 NC_023006_p35 hypothetical protein singleton unknown function unknown function 1 28973 29371
YP_008873205.1 NC_023006_p29 hypothetical protein phrog_16943 unknown function unknown function -1 24009 24467
YP_008873230.1 NC_023006_p54 hypothetical protein phrog_18326 unknown function unknown function 1 37524 38099
YP_008873220.1 NC_023006_p44 hypothetical protein singleton unknown function unknown function 1 32204 32392