Genomic map of Staphylococcus phage Sb-1 (NC_023009)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023009
Definition
Staphylococcus phage Sb-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Kayvirus; Staphylococcus virus Sb1.
DB of origin
REFSEQ
Length
127188
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
168
%GC
30.47
Number of singletons
0
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_008873638.1 NC_023009_p118 hypothetical protein phrog_2797 unknown function unknown function 1 93980 94309
YP_008873586.1 NC_023009_p66 hypothetical protein phrog_1917 virion structural protein head and packaging 1 37228 38028
YP_008873658.1 NC_023009_p138 hypothetical protein phrog_3644 unknown function unknown function 1 109660 109971
YP_008873540.1 NC_023009_p20 hypothetical protein phrog_3697 unknown function unknown function -1 9415 9654
YP_008873605.1 NC_023009_p85 hypothetical protein phrog_1905 unknown function unknown function 1 52341 52799
YP_008873639.1 NC_023009_p119 thioredoxin-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 94293 94613
YP_008873645.1 NC_023009_p125 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 99104 99811
YP_008873549.1 NC_023009_p29 hypothetical protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover -1 13267 14385
YP_008873573.1 NC_023009_p53 endolysin phrog_635 endolysin lysis -1 27051 29414
YP_008873554.1 NC_023009_p34 hypothetical protein phrog_2966 unknown function unknown function -1 15942 16103
YP_008873551.1 NC_023009_p31 hypothetical protein phrog_2708 nucleotide kinase other -1 14828 15274
YP_008873666.1 NC_023009_p146 hypothetical protein phrog_2726 unknown function unknown function 1 114722 115426
YP_008873550.1 NC_023009_p30 hypothetical protein phrog_2861 unknown function unknown function -1 14539 14754
YP_008873541.1 NC_023009_p21 hypothetical protein phrog_2164 unknown function unknown function -1 9656 10045
YP_008873594.1 NC_023009_p74 hypothetical protein phrog_1133 unknown function unknown function 1 43414 44370
YP_008873527.1 NC_023009_p7 hypothetical protein phrog_4249 unknown function unknown function -1 2303 2494
YP_008873687.1 NC_023009_p167 hypothetical protein phrog_1099 unknown function unknown function 1 126051 126290
YP_008873545.1 NC_023009_p25 hypothetical protein phrog_3702 unknown function unknown function -1 11432 11965
YP_008873568.1 NC_023009_p48 hypothetical protein phrog_2770 unknown function unknown function -1 23983 24204
YP_008873628.1 NC_023009_p108 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 83899 84936
YP_008873553.1 NC_023009_p33 hypothetical protein phrog_3048 unknown function unknown function -1 15710 15898
YP_008873688.1 NC_023009_p168 hypothetical protein phrog_3522 unknown function unknown function 1 126301 126648
YP_008873595.1 NC_023009_p75 major capsid protein phrog_752 major head protein head and packaging 1 44486 45877
YP_008873678.1 NC_023009_p158 hypothetical protein phrog_4637 unknown function unknown function 1 121938 122267
YP_008873646.1 NC_023009_p126 hypothetical protein phrog_3621 unknown function unknown function 1 100975 101217
YP_008873671.1 NC_023009_p151 hypothetical protein phrog_1099 unknown function unknown function 1 117388 117696
YP_008873590.1 NC_023009_p70 hypothetical protein phrog_3937 unknown function unknown function 1 39994 40344
YP_008873630.1 NC_023009_p110 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 85313 87232
YP_008873655.1 NC_023009_p135 hypothetical protein phrog_2673 unknown function unknown function 1 107028 107288
YP_008873571.1 NC_023009_p51 hypothetical protein phrog_200 lipoprotein other -1 25839 26630
YP_008873548.1 NC_023009_p28 hypothetical protein phrog_1909 unknown function unknown function -1 12410 13255
YP_008873640.1 NC_023009_p120 hypothetical protein phrog_1054 unknown function unknown function 1 94820 95416
YP_008873585.1 NC_023009_p65 terminase large subunit phrog_675 terminase large subunit head and packaging 1 35397 37214
YP_008873529.1 NC_023009_p9 hypothetical protein phrog_2349 unknown function unknown function -1 2969 3400
YP_008873603.1 NC_023009_p83 hypothetical protein phrog_985 virion structural protein head and packaging 1 51633 52061
YP_008873574.1 NC_023009_p54 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 27951 28451
YP_008873560.1 NC_023009_p40 RNA ligase phrog_548 RNA ligase DNA, RNA and nucleotide metabolism -1 19879 20775
YP_008873654.1 NC_023009_p134 hypothetical protein phrog_1696 major tail protein tail 1 106705 106932
YP_008873676.1 NC_023009_p156 hypothetical protein phrog_3224 unknown function unknown function 1 121113 121424
YP_008873667.1 NC_023009_p147 hypothetical protein phrog_2863 unknown function unknown function 1 115488 115886
YP_008873524.1 NC_023009_p4 hypothetical protein phrog_7534 unknown function unknown function -1 964 1449
YP_008873596.1 NC_023009_p76 hypothetical protein phrog_1205 unknown function unknown function 1 45969 46265
YP_008873600.1 NC_023009_p80 hypothetical protein phrog_1000 unknown function unknown function 1 48717 49553
YP_008873619.1 NC_023009_p99 hypothetical protein phrog_1394 virion structural protein head and packaging 1 71010 71531
YP_008873521.1 NC_023009_p1 hypothetical protein phrog_7733 unknown function unknown function 1 3 128
YP_008873606.1 NC_023009_p86 hypothetical protein phrog_4320 unknown function unknown function 1 52812 53006
YP_008873672.1 NC_023009_p152 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 117693 118601
YP_008873591.1 NC_023009_p71 hypothetical protein phrog_1108 portal protein head and packaging 1 40362 40733
YP_008873641.1 NC_023009_p121 hypothetical protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 95426 95731
YP_008873543.1 NC_023009_p23 hypothetical protein phrog_3319 unknown function unknown function -1 10358 10840
YP_008873657.1 NC_023009_p137 hypothetical protein phrog_2892 unknown function unknown function 1 109305 109673
YP_008873617.1 NC_023009_p97 hypothetical protein phrog_6 baseplate wedge subunit tail 1 66773 67819
YP_008873632.1 NC_023009_p112 hypothetical protein phrog_1291 unknown function unknown function 1 88976 89314
YP_008873532.1 NC_023009_p12 hypothetical protein phrog_3857 unknown function unknown function -1 4469 4867
YP_008873614.1 NC_023009_p94 hypothetical protein phrog_1011 virion structural protein head and packaging 1 64739 65530
YP_008873680.1 NC_023009_p160 hypothetical protein phrog_5741 unknown function unknown function 1 122491 122805
YP_008873563.1 NC_023009_p43 hypothetical protein phrog_2995 unknown function unknown function -1 21860 22474
YP_008873609.1 NC_023009_p89 hypothetical protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 54033 54389
YP_008873668.1 NC_023009_p148 hypothetical protein phrog_4430 unknown function unknown function 1 116612 116770
YP_008873561.1 NC_023009_p41 hypothetical protein phrog_3093 unknown function unknown function -1 20775 20999
YP_008873564.1 NC_023009_p44 hypothetical protein phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 22490 22915
YP_008873572.1 NC_023009_p52 hypothetical protein phrog_3667 unknown function unknown function -1 26630 26938
YP_008873686.1 NC_023009_p166 hypothetical protein phrog_1099 unknown function unknown function 1 125716 125973
YP_008873634.1 NC_023009_p114 resolvase phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 89753 90361
YP_008873642.1 NC_023009_p122 ORF035-like protein phrog_4008 DNA polymerase DNA, RNA and nucleotide metabolism 1 95807 96679
YP_008873636.1 NC_023009_p116 ribonucleotide reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 90785 92899
YP_008873669.1 NC_023009_p149 hypothetical protein phrog_3453 unknown function unknown function 1 116805 117005
YP_008873673.1 NC_023009_p153 nicotinamide phosphoribosyl transferase phrog_448 nicotinamide phosphoribosyl transferase other 1 118619 120088
YP_008873633.1 NC_023009_p113 hypothetical protein phrog_1095 unknown function unknown function 1 89314 89766
YP_008873624.1 NC_023009_p104 hypothetical protein phrog_2691 tail fiber protein tail 1 77544 78920
YP_008873626.1 NC_023009_p106 hypothetical protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 80772 82385
YP_008873602.1 NC_023009_p82 tail sheath protein phrog_279 tail sheath tail 1 49797 51560
YP_008873659.1 NC_023009_p139 hypothetical protein phrog_1080 unknown function unknown function 1 110035 110571
YP_008873526.1 NC_023009_p6 hypothetical protein phrog_4355 unknown function unknown function -1 1869 2300
YP_008873629.1 NC_023009_p109 hypothetical protein phrog_2773 unknown function unknown function 1 84936 85313
YP_008873582.1 NC_023009_p62 hypothetical protein phrog_3395 membrane protein moron, auxiliary metabolic gene and host takeover 1 34333 34719
YP_008873537.1 NC_023009_p17 hypothetical protein phrog_3686 unknown function unknown function -1 8096 8314
YP_008873627.1 NC_023009_p107 DNA helicase subunit phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 82378 83820
YP_008873567.1 NC_023009_p47 transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 23750 23980
YP_008873650.1 NC_023009_p130 hypothetical protein phrog_1089 unknown function unknown function 1 104393 104746
YP_008873665.1 NC_023009_p145 hypothetical protein phrog_1303 DNA binding protein DNA, RNA and nucleotide metabolism 1 114262 114705
YP_008873612.1 NC_023009_p92 hypothetical protein phrog_2677 tail protein with lysin activity tail 1 61199 62086
YP_008873616.1 NC_023009_p96 baseplate protein phrog_975 baseplate protein tail 1 66054 66758
YP_008873552.1 NC_023009_p32 DNA-binding protein phrog_715 MazG-like pyrophosphatase other -1 15408 15710
YP_008873662.1 NC_023009_p142 hypothetical protein phrog_1113 unknown function unknown function 1 111755 112618
YP_008873675.1 NC_023009_p155 hypothetical protein phrog_4340 unknown function unknown function 1 120826 121047
YP_008873592.1 NC_023009_p72 portal protein phrog_12 portal protein head and packaging 1 40737 42428
YP_008873562.1 NC_023009_p42 PhoH-related protein phrog_170 PhoH-like phosphate starvation-inducible other -1 21068 21808
YP_008873536.1 NC_023009_p16 hypothetical protein phrog_2948 unknown function unknown function -1 7544 8092
YP_008873569.1 NC_023009_p49 hypothetical protein phrog_3310 transglycosylase other -1 24318 24950
YP_008873538.1 NC_023009_p18 hypothetical protein phrog_3950 unknown function unknown function -1 8315 8509
YP_008873683.1 NC_023009_p163 hypothetical protein phrog_654 unknown function unknown function 1 124842 125132
YP_008873534.1 NC_023009_p14 hypothetical protein phrog_2981 unknown function unknown function -1 5671 6225
YP_008873570.1 NC_023009_p50 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25137 25772
YP_008873622.1 NC_023009_p102 hypothetical protein phrog_2665 virion structural protein head and packaging 1 75218 77140
YP_008873546.1 NC_023009_p26 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation -1 11968 12132
YP_008873631.1 NC_023009_p111 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 87232 87828
YP_008873648.1 NC_023009_p128 hypothetical protein phrog_2672 unknown function unknown function 1 102183 103073
YP_008873544.1 NC_023009_p24 hypothetical protein phrog_3635 unknown function unknown function -1 10890 11432
YP_008873664.1 NC_023009_p144 hypothetical protein phrog_1104 virion structural protein head and packaging 1 113739 114197
YP_008873601.1 NC_023009_p81 hypothetical protein phrog_1151 unknown function unknown function 1 49555 49770
YP_008873535.1 NC_023009_p15 major tail protein phrog_4178 major tail protein tail -1 6241 6558
YP_008873644.1 NC_023009_p124 ORF019-like protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 97493 98836
YP_008873530.1 NC_023009_p10 hypothetical protein phrog_4045 unknown function unknown function -1 3414 3956
YP_008873556.1 NC_023009_p36 hypothetical protein phrog_2811 virion structural protein head and packaging -1 18229 18492
YP_008873660.1 NC_023009_p140 hypothetical protein phrog_984 unknown function unknown function 1 110564 111331
YP_008873542.1 NC_023009_p22 hypothetical protein phrog_3504 unknown function unknown function -1 10144 10317
YP_008873653.1 NC_023009_p133 major tail protein phrog_341 major tail protein tail 1 106178 106690
YP_008873682.1 NC_023009_p162 hypothetical protein phrog_654 unknown function unknown function 1 124234 124533
YP_008873575.1 NC_023009_p55 holin phrog_962 holin lysis -1 29414 29917
YP_008873670.1 NC_023009_p150 hypothetical protein phrog_4096 unknown function unknown function 1 117006 117296
YP_008873593.1 NC_023009_p73 prohead protease phrog_1028 head maturation protease head and packaging 1 42622 43395
YP_008873566.1 NC_023009_p46 hypothetical protein phrog_2896 unknown function unknown function -1 23119 23760
YP_008873677.1 NC_023009_p157 hypothetical protein phrog_4855 endolysin lysis 1 121427 121936
YP_008873588.1 NC_023009_p68 hypothetical protein phrog_1116 unknown function unknown function 1 38185 38664
YP_008873604.1 NC_023009_p84 hypothetical protein phrog_2701 unknown function unknown function 1 52158 52298
YP_008873652.1 NC_023009_p132 hypothetical protein phrog_1240 Ig domain containing protein other 1 105523 106155
YP_008873557.1 NC_023009_p37 LysM domain-containing protein phrog_1274 lysM motif protein lysis -1 18509 18682
YP_008873679.1 NC_023009_p159 hypothetical protein phrog_4983 unknown function unknown function 1 122273 122467
YP_008873674.1 NC_023009_p154 hypothetical protein phrog_3847 unknown function unknown function 1 120432 120824
YP_008873576.1 NC_023009_p56 hypothetical protein phrog_987 unknown function unknown function -1 30002 30187
YP_008873598.1 NC_023009_p78 hypothetical protein phrog_1004 virion structural protein head and packaging 1 47200 47970
YP_008873583.1 NC_023009_p63 hypothetical protein phrog_1321 unknown function unknown function 1 34697 34975
YP_008873578.1 NC_023009_p58 hypothetical protein phrog_1215 unknown function unknown function -1 33000 33209
YP_008873620.1 NC_023009_p100 hypothetical protein phrog_877 unknown function unknown function 1 71552 75010
YP_008873589.1 NC_023009_p69 hypothetical protein phrog_3094 unknown function unknown function 1 38706 39917
YP_008873607.1 NC_023009_p87 hypothetical protein phrog_2754 virion structural protein head and packaging 1 53088 53399
YP_008873523.1 NC_023009_p3 hypothetical protein phrog_2884 unknown function unknown function -1 726 962
YP_008873587.1 NC_023009_p67 hypothetical protein phrog_3863 unknown function unknown function 1 38015 38188
YP_008873539.1 NC_023009_p19 hypothetical protein phrog_3464 nucleotidyltransferase DNA, RNA and nucleotide metabolism -1 8499 9236
YP_008873621.1 NC_023009_p101 hypothetical protein phrog_1074 unknown function unknown function 1 75059 75217
YP_008873651.1 NC_023009_p131 sigma factor phrog_1025 RNA polymerase sigma factor transcription regulation 1 104733 105395
YP_008873611.1 NC_023009_p91 hypothetical protein phrog_1015 tail protein with lysin activity tail 1 58759 61185
YP_008873618.1 NC_023009_p98 hypothetical protein phrog_2386 virion structural protein head and packaging 1 67840 70899
YP_008873547.1 NC_023009_p27 hypothetical protein phrog_3751 membrane protein moron, auxiliary metabolic gene and host takeover -1 12135 12410
YP_008873531.1 NC_023009_p11 hypothetical protein phrog_1017 unknown function unknown function -1 3968 4456
YP_008873522.1 NC_023009_p2 hypothetical protein phrog_4863 unknown function unknown function 1 213 392
YP_008873643.1 NC_023009_p123 hypothetical protein phrog_2340 endonuclease DNA, RNA and nucleotide metabolism 1 96845 97357
YP_008873584.1 NC_023009_p64 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 34972 35382
YP_008873565.1 NC_023009_p45 hypothetical protein phrog_2706 unknown function unknown function -1 22905 23096
YP_008873661.1 NC_023009_p141 hypothetical protein phrog_2356 unknown function unknown function 1 111309 111755
YP_008873525.1 NC_023009_p5 hypothetical protein phrog_5770 unknown function unknown function -1 1462 1869
YP_008873681.1 NC_023009_p161 hypothetical protein phrog_5729 unknown function unknown function 1 122820 122987
YP_008873558.1 NC_023009_p38 hypothetical protein phrog_2642 unknown function unknown function -1 18689 19267
YP_008873597.1 NC_023009_p77 hypothetical protein phrog_772 tail fiber protein tail 1 46278 47186
YP_008873635.1 NC_023009_p115 NrdI flavodoxin-like protein phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover 1 90378 90770
YP_008873533.1 NC_023009_p13 serine/threonine protein phosphatase, phrog_246 NinI-like serine-threonine phosphatase other -1 4864 5571
YP_008873555.1 NC_023009_p35 hypothetical protein phrog_3200 unknown function unknown function -1 16103 18151
YP_008873649.1 NC_023009_p129 hypothetical protein phrog_97 UvsX-like recombinase other 1 103133 104389
YP_008873559.1 NC_023009_p39 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 19260 19886
YP_008873637.1 NC_023009_p117 ribonucleotide reductase minor subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 92913 93962
YP_008873613.1 NC_023009_p93 glycerophosphoryl diester phosphodiesterase phrog_2204 glycerophosphoryl diester phosphodiesterase other 1 62086 64632
YP_008873623.1 NC_023009_p103 hypothetical protein phrog_2671 tail fiber protein tail 1 77163 77537
YP_008873579.1 NC_023009_p59 hypothetical protein phrog_937 hemolysin other -1 33222 33554
YP_008873577.1 NC_023009_p57 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 31734 31955
YP_008873581.1 NC_023009_p61 hypothetical protein phrog_4526 unknown function unknown function -1 33926 34192
YP_008873625.1 NC_023009_p105 DNA helicase UvsW phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 79012 80760
YP_008873685.1 NC_023009_p165 hypothetical protein phrog_654 unknown function unknown function 1 125419 125712
YP_008873528.1 NC_023009_p8 hypothetical protein phrog_3619 unknown function unknown function -1 2491 2976
YP_008873608.1 NC_023009_p88 hypothetical protein phrog_1038 tail assembly chaperone tail 1 53531 53989
YP_008873656.1 NC_023009_p136 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 108041 109291
YP_008873647.1 NC_023009_p127 hypothetical protein phrog_1069 unknown function unknown function 1 101234 101716
YP_008873684.1 NC_023009_p164 hypothetical protein phrog_654 unknown function unknown function 1 125132 125419
YP_008873610.1 NC_023009_p90 hypothetical protein phrog_1047 tail associated lysin tail 1 54622 58680
YP_008873615.1 NC_023009_p95 hypothetical protein phrog_1073 unknown function unknown function 1 65530 66054
YP_008873580.1 NC_023009_p60 hypothetical protein phrog_1481 unknown function unknown function -1 33567 33893
YP_008873599.1 NC_023009_p79 hypothetical protein phrog_1127 unknown function unknown function 1 48078 48698
YP_008873663.1 NC_023009_p143 hypothetical protein phrog_1007 unknown function unknown function 1 112990 113721