| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023498 |
Definition |
Mycobacterium phage Validus, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
62466 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
105 |
%GC |
68.43 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009002695.1 | NC_023498_p44 | integrase Y-int | phrog_1 | integrase | integration and excision | 1 | 33099 | 34196 |
| YP_009002718.1 | NC_023498_p67 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 43466 | 43675 |
| YP_009002742.1 | NC_023498_p91 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 56922 | 57275 |
| YP_009002653.1 | NC_023498_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 277 | 480 |
| YP_009002676.1 | NC_023498_p25 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 19858 | 20166 |
| YP_009002715.1 | NC_023498_p64 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42777 | 42986 |
| YP_009002734.1 | NC_023498_p83 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 53195 | 54058 |
| YP_009002701.1 | NC_023498_p50 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 36951 | 37181 |
| YP_009002671.1 | NC_023498_p20 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 11056 | 15213 |
| YP_009002755.1 | NC_023498_p104 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 61894 | 62133 |
| YP_009002692.1 | NC_023498_p41 | hypothetical protein | phrog_9364 | unknown function | unknown function | 1 | 31203 | 31385 |
| YP_009002698.1 | NC_023498_p47 | HTH DNA binding protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 35897 | 36190 |
| YP_009002753.1 | NC_023498_p102 | hypothetical protein | phrog_13379 | unknown function | unknown function | 1 | 61225 | 61548 |
| YP_009002667.1 | NC_023498_p16 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8976 | 9398 |
| YP_009002673.1 | NC_023498_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16448 | 18214 |
| YP_009002675.1 | NC_023498_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18769 | 19851 |
| YP_009002704.1 | NC_023498_p53 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 37554 | 38354 |
| YP_009002703.1 | NC_023498_p52 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 37348 | 37557 |
| YP_009002726.1 | NC_023498_p75 | RusA-like protein | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48363 | 49091 |
| YP_009002736.1 | NC_023498_p85 | hypothetical protein | phrog_30020 | unknown function | unknown function | 1 | 54324 | 54686 |
| YP_009002725.1 | NC_023498_p74 | hypothetical protein | phrog_7662 | unknown function | unknown function | 1 | 47975 | 48295 |
| YP_009002681.1 | NC_023498_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 25785 | 26546 |
| YP_009002739.1 | NC_023498_p88 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 55221 | 55430 |
| YP_009002711.1 | NC_023498_p60 | DnaQ-like protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40705 | 41262 |
| YP_009002690.1 | NC_023498_p39 | hypothetical protein | phrog_7081 | unknown function | unknown function | 1 | 29887 | 30282 |
| YP_009002721.1 | NC_023498_p70 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44494 | 44733 |
| YP_009002697.1 | NC_023498_p46 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35320 | 35733 |
| YP_009002756.1 | NC_023498_p105 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62130 | 62417 |
| YP_009002740.1 | NC_023498_p89 | hypothetical protein | phrog_26807 | unknown function | unknown function | 1 | 55444 | 55620 |
| YP_009002683.1 | NC_023498_p32 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 27015 | 27377 |
| YP_009002658.1 | NC_023498_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1576 | 3006 |
| YP_009002682.1 | NC_023498_p31 | holin | phrog_565 | holin | lysis | 1 | 26557 | 27018 |
| YP_009002728.1 | NC_023498_p77 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 49542 | 50633 |
| YP_009002752.1 | NC_023498_p101 | hypothetical protein | phrog_8588 | unknown function | unknown function | 1 | 60861 | 61178 |
| YP_009002684.1 | NC_023498_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27374 | 27625 |
| YP_009002730.1 | NC_023498_p79 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50873 | 51148 |
| YP_009002719.1 | NC_023498_p68 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43672 | 43791 |
| YP_009002693.1 | NC_023498_p42 | hypothetical protein | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31502 | 32383 |
| YP_009002754.1 | NC_023498_p103 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 61559 | 61879 |
| YP_009002654.1 | NC_023498_p3 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 477 | 689 |
| YP_009002716.1 | NC_023498_p65 | hypothetical protein | phrog_8427 | unknown function | unknown function | 1 | 42988 | 43194 |
| YP_009002689.1 | NC_023498_p38 | hypothetical protein | phrog_34340 | unknown function | unknown function | 1 | 29569 | 29769 |
| YP_009002674.1 | NC_023498_p23 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18214 | 18687 |
| YP_009002717.1 | NC_023498_p66 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 43191 | 43469 |
| YP_009002724.1 | NC_023498_p73 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 45381 | 47978 |
| YP_009002733.1 | NC_023498_p82 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 52849 | 53103 |
| YP_009002745.1 | NC_023498_p94 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 58505 | 58669 |
| YP_009002669.1 | NC_023498_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10149 | 11056 |
| YP_009002713.1 | NC_023498_p62 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41564 | 41896 |
| YP_009002706.1 | NC_023498_p55 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38620 | 39468 |
| YP_009002687.1 | NC_023498_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29007 | 29120 |
| YP_009002664.1 | NC_023498_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7976 | 8353 |
| YP_009002679.1 | NC_023498_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23713 | 24087 |
| YP_009002744.1 | NC_023498_p93 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 57927 | 58508 |
| YP_009002666.1 | NC_023498_p15 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 8689 | 8979 |
| YP_009002694.1 | NC_023498_p43 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32448 | 32894 |
| YP_009002732.1 | NC_023498_p81 | SprT-like protein | phrog_1006 | unknown function | unknown function | 1 | 52159 | 52722 |
| YP_009002738.1 | NC_023498_p87 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 54961 | 55221 |
| YP_009002729.1 | NC_023498_p78 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 50643 | 50876 |
| YP_009002685.1 | NC_023498_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27612 | 28742 |
| YP_009002672.1 | NC_023498_p21 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 15308 | 16447 |
| YP_009002670.1 | NC_023498_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10149 | 10643 |
| YP_009002677.1 | NC_023498_p26 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 20168 | 22669 |
| YP_009002735.1 | NC_023498_p84 | hypothetical protein | phrog_5035 | unknown function | unknown function | 1 | 54055 | 54342 |
| YP_009002688.1 | NC_023498_p37 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29156 | 29569 |
| YP_009002657.1 | NC_023498_p6 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1356 | 1592 |
| YP_009002665.1 | NC_023498_p14 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 8355 | 8708 |
| YP_009002700.1 | NC_023498_p49 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36462 | 36773 |
| YP_009002686.1 | NC_023498_p35 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 28742 | 28969 |
| YP_009002652.1 | NC_023498_p1 | zinc peptidase | phrog_4624 | unknown function | unknown function | 1 | 71 | 280 |
| YP_009002696.1 | NC_023498_p45 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 34305 | 35225 |
| YP_009002691.1 | NC_023498_p40 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30418 | 31113 |
| YP_009002712.1 | NC_023498_p61 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41259 | 41567 |
| YP_009002662.1 | NC_023498_p11 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 6293 | 6850 |
| YP_009002727.1 | NC_023498_p76 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 49084 | 49545 |
| YP_009002661.1 | NC_023498_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6042 | 6227 |
| YP_009002731.1 | NC_023498_p80 | PE family protein | phrog_9390 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 51145 | 52035 |
| YP_009002750.1 | NC_023498_p99 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60220 | 60423 |
| YP_009002705.1 | NC_023498_p54 | WhiB-like protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38351 | 38623 |
| YP_009002743.1 | NC_023498_p92 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 57272 | 57934 |
| YP_009002659.1 | NC_023498_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3003 | 4568 |
| YP_009002741.1 | NC_023498_p90 | RtcB-like protein | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 55730 | 56920 |
| YP_009002749.1 | NC_023498_p98 | YcfA-like protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 59954 | 60172 |
| YP_009002746.1 | NC_023498_p95 | hypothetical protein | phrog_4631 | unknown function | unknown function | 1 | 58944 | 59276 |
| YP_009002663.1 | NC_023498_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6925 | 7860 |
| YP_009002710.1 | NC_023498_p59 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40404 | 40694 |
| YP_009002660.1 | NC_023498_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4528 | 6045 |
| YP_009002720.1 | NC_023498_p69 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43876 | 44394 |
| YP_009002722.1 | NC_023498_p71 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 44730 | 44951 |
| YP_009002702.1 | NC_023498_p51 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 37178 | 37354 |
| YP_009002678.1 | NC_023498_p27 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 22666 | 23631 |
| YP_009002748.1 | NC_023498_p97 | hypothetical protein | phrog_5243 | unknown function | unknown function | 1 | 59635 | 59832 |
| YP_009002680.1 | NC_023498_p29 | lysin A | phrog_1519 | endolysin | lysis | 1 | 24115 | 25788 |
| YP_009002751.1 | NC_023498_p100 | hypothetical protein | phrog_24868 | unknown function | unknown function | 1 | 60452 | 60739 |
| YP_009002708.1 | NC_023498_p57 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 39687 | 40025 |
| YP_009002723.1 | NC_023498_p72 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44948 | 45340 |
| YP_009002714.1 | NC_023498_p63 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41893 | 42780 |
| YP_009002656.1 | NC_023498_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1172 | 1372 |
| YP_009002707.1 | NC_023498_p56 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 39481 | 39654 |
| YP_009002747.1 | NC_023498_p96 | hypothetical protein | phrog_18965 | unknown function | unknown function | 1 | 59264 | 59536 |
| YP_009002699.1 | NC_023498_p48 | HTH DNA binding protein | phrog_1840 | excisionase | integration and excision | 1 | 36187 | 36471 |
| YP_009002655.1 | NC_023498_p4 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 682 | 942 |
| YP_009002737.1 | NC_023498_p86 | hypothetical protein | phrog_5794 | unknown function | unknown function | 1 | 54683 | 54964 |
| YP_009002709.1 | NC_023498_p58 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 40022 | 40411 |
| YP_009002668.1 | NC_023498_p17 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9492 | 10103 |