Genomic map of Mycobacterium phage Validus (NC_023498)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023498
Definition
Mycobacterium phage Validus, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus.
DB of origin
REFSEQ
Length
62466
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
105
%GC
68.43
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009002695.1 NC_023498_p44 integrase Y-int phrog_1 integrase integration and excision 1 33099 34196
YP_009002718.1 NC_023498_p67 hypothetical protein phrog_1581 unknown function unknown function 1 43466 43675
YP_009002742.1 NC_023498_p91 hypothetical protein phrog_3167 unknown function unknown function 1 56922 57275
YP_009002653.1 NC_023498_p2 hypothetical protein phrog_5284 unknown function unknown function 1 277 480
YP_009002676.1 NC_023498_p25 hypothetical protein phrog_1736 minor tail protein tail 1 19858 20166
YP_009002715.1 NC_023498_p64 hypothetical protein phrog_3492 unknown function unknown function 1 42777 42986
YP_009002734.1 NC_023498_p83 hypothetical protein phrog_2342 unknown function unknown function 1 53195 54058
YP_009002701.1 NC_023498_p50 hypothetical protein phrog_6733 unknown function unknown function 1 36951 37181
YP_009002671.1 NC_023498_p20 tapemeasure phrog_971 endolysin lysis 1 11056 15213
YP_009002755.1 NC_023498_p104 hypothetical protein phrog_4561 unknown function unknown function 1 61894 62133
YP_009002692.1 NC_023498_p41 hypothetical protein phrog_9364 unknown function unknown function 1 31203 31385
YP_009002698.1 NC_023498_p47 HTH DNA binding protein phrog_1702 transcriptional repressor transcription regulation 1 35897 36190
YP_009002753.1 NC_023498_p102 hypothetical protein phrog_13379 unknown function unknown function 1 61225 61548
YP_009002667.1 NC_023498_p16 hypothetical protein phrog_123 tail terminator connector 1 8976 9398
YP_009002673.1 NC_023498_p22 minor tail protein phrog_110 minor tail protein tail 1 16448 18214
YP_009002675.1 NC_023498_p24 minor tail protein phrog_1565 minor tail protein tail 1 18769 19851
YP_009002704.1 NC_023498_p53 hypothetical protein phrog_2286 unknown function unknown function 1 37554 38354
YP_009002703.1 NC_023498_p52 hypothetical protein phrog_3903 unknown function unknown function 1 37348 37557
YP_009002726.1 NC_023498_p75 RusA-like protein phrog_3055 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 48363 49091
YP_009002736.1 NC_023498_p85 hypothetical protein phrog_30020 unknown function unknown function 1 54324 54686
YP_009002725.1 NC_023498_p74 hypothetical protein phrog_7662 unknown function unknown function 1 47975 48295
YP_009002681.1 NC_023498_p30 lysin B phrog_102 endolysin lysis 1 25785 26546
YP_009002739.1 NC_023498_p88 hypothetical protein phrog_666 unknown function unknown function 1 55221 55430
YP_009002711.1 NC_023498_p60 DnaQ-like protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 40705 41262
YP_009002690.1 NC_023498_p39 hypothetical protein phrog_7081 unknown function unknown function 1 29887 30282
YP_009002721.1 NC_023498_p70 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 44494 44733
YP_009002697.1 NC_023498_p46 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 35320 35733
YP_009002756.1 NC_023498_p105 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 62130 62417
YP_009002740.1 NC_023498_p89 hypothetical protein phrog_26807 unknown function unknown function 1 55444 55620
YP_009002683.1 NC_023498_p32 hypothetical protein phrog_404 minor tail protein tail 1 27015 27377
YP_009002658.1 NC_023498_p7 terminase large subunit phrog_2 terminase large subunit head and packaging 1 1576 3006
YP_009002682.1 NC_023498_p31 holin phrog_565 holin lysis 1 26557 27018
YP_009002728.1 NC_023498_p77 hypothetical protein phrog_908 unknown function unknown function 1 49542 50633
YP_009002752.1 NC_023498_p101 hypothetical protein phrog_8588 unknown function unknown function 1 60861 61178
YP_009002684.1 NC_023498_p33 hypothetical protein phrog_1738 unknown function unknown function 1 27374 27625
YP_009002730.1 NC_023498_p79 hypothetical protein phrog_1338 unknown function unknown function 1 50873 51148
YP_009002719.1 NC_023498_p68 hypothetical protein phrog_2388 unknown function unknown function 1 43672 43791
YP_009002693.1 NC_023498_p42 hypothetical protein phrog_1279 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 31502 32383
YP_009002754.1 NC_023498_p103 hypothetical protein phrog_747 unknown function unknown function 1 61559 61879
YP_009002654.1 NC_023498_p3 hypothetical protein phrog_2293 unknown function unknown function 1 477 689
YP_009002716.1 NC_023498_p65 hypothetical protein phrog_8427 unknown function unknown function 1 42988 43194
YP_009002689.1 NC_023498_p38 hypothetical protein phrog_34340 unknown function unknown function 1 29569 29769
YP_009002674.1 NC_023498_p23 minor tail protein phrog_1697 minor tail protein tail 1 18214 18687
YP_009002717.1 NC_023498_p66 hypothetical protein phrog_5466 unknown function unknown function 1 43191 43469
YP_009002724.1 NC_023498_p73 DNA primase phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 45381 47978
YP_009002733.1 NC_023498_p82 hypothetical protein phrog_2974 unknown function unknown function 1 52849 53103
YP_009002745.1 NC_023498_p94 hypothetical protein phrog_3665 unknown function unknown function 1 58505 58669
YP_009002669.1 NC_023498_p18 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 10149 11056
YP_009002713.1 NC_023498_p62 hypothetical protein phrog_2870 unknown function unknown function 1 41564 41896
YP_009002706.1 NC_023498_p55 hypothetical protein phrog_2781 unknown function unknown function 1 38620 39468
YP_009002687.1 NC_023498_p36 hypothetical protein singleton unknown function unknown function 1 29007 29120
YP_009002664.1 NC_023498_p13 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 7976 8353
YP_009002679.1 NC_023498_p28 hypothetical protein phrog_240 head protein head and packaging 1 23713 24087
YP_009002744.1 NC_023498_p93 hypothetical protein phrog_2493 unknown function unknown function 1 57927 58508
YP_009002666.1 NC_023498_p15 hypothetical protein phrog_387 neck protein connector 1 8689 8979
YP_009002694.1 NC_023498_p43 hypothetical protein phrog_658 unknown function unknown function -1 32448 32894
YP_009002732.1 NC_023498_p81 SprT-like protein phrog_1006 unknown function unknown function 1 52159 52722
YP_009002738.1 NC_023498_p87 hypothetical protein phrog_5288 unknown function unknown function 1 54961 55221
YP_009002729.1 NC_023498_p78 hypothetical protein phrog_4269 unknown function unknown function 1 50643 50876
YP_009002685.1 NC_023498_p34 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 27612 28742
YP_009002672.1 NC_023498_p21 hypothetical protein phrog_106 minor tail protein tail 1 15308 16447
YP_009002670.1 NC_023498_p19 tail assembly chaperone phrog_1861 unknown function unknown function 1 10149 10643
YP_009002677.1 NC_023498_p26 hypothetical protein phrog_746 minor tail protein tail 1 20168 22669
YP_009002735.1 NC_023498_p84 hypothetical protein phrog_5035 unknown function unknown function 1 54055 54342
YP_009002688.1 NC_023498_p37 hypothetical protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 29156 29569
YP_009002657.1 NC_023498_p6 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 1356 1592
YP_009002665.1 NC_023498_p14 hypothetical protein phrog_763 head-tail adaptor connector 1 8355 8708
YP_009002700.1 NC_023498_p49 hypothetical protein phrog_2908 unknown function unknown function 1 36462 36773
YP_009002686.1 NC_023498_p35 hypothetical protein phrog_1042 unknown function unknown function 1 28742 28969
YP_009002652.1 NC_023498_p1 zinc peptidase phrog_4624 unknown function unknown function 1 71 280
YP_009002696.1 NC_023498_p45 hypothetical protein phrog_950 unknown function unknown function -1 34305 35225
YP_009002691.1 NC_023498_p40 hypothetical protein phrog_2433 unknown function unknown function 1 30418 31113
YP_009002712.1 NC_023498_p61 hypothetical protein phrog_2870 unknown function unknown function 1 41259 41567
YP_009002662.1 NC_023498_p11 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 6293 6850
YP_009002727.1 NC_023498_p76 hypothetical protein phrog_3478 unknown function unknown function 1 49084 49545
YP_009002661.1 NC_023498_p10 hypothetical protein phrog_1757 unknown function unknown function 1 6042 6227
YP_009002731.1 NC_023498_p80 PE family protein phrog_9390 DNA binding protein DNA, RNA and nucleotide metabolism 1 51145 52035
YP_009002750.1 NC_023498_p99 hypothetical protein singleton unknown function unknown function 1 60220 60423
YP_009002705.1 NC_023498_p54 WhiB-like protein phrog_472 WhiB transcriptional factor transcription regulation 1 38351 38623
YP_009002743.1 NC_023498_p92 hypothetical protein phrog_2822 unknown function unknown function 1 57272 57934
YP_009002659.1 NC_023498_p8 portal protein phrog_104 portal protein head and packaging 1 3003 4568
YP_009002741.1 NC_023498_p90 RtcB-like protein phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism 1 55730 56920
YP_009002749.1 NC_023498_p98 YcfA-like protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 59954 60172
YP_009002746.1 NC_023498_p95 hypothetical protein phrog_4631 unknown function unknown function 1 58944 59276
YP_009002663.1 NC_023498_p12 major capsid protein phrog_10 major head protein head and packaging 1 6925 7860
YP_009002710.1 NC_023498_p59 hypothetical protein phrog_1956 unknown function unknown function 1 40404 40694
YP_009002660.1 NC_023498_p9 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 4528 6045
YP_009002720.1 NC_023498_p69 hypothetical protein phrog_1911 unknown function unknown function 1 43876 44394
YP_009002722.1 NC_023498_p71 hypothetical protein phrog_3641 unknown function unknown function 1 44730 44951
YP_009002702.1 NC_023498_p51 hypothetical protein phrog_2654 unknown function unknown function 1 37178 37354
YP_009002678.1 NC_023498_p27 hypothetical protein phrog_416 minor tail protein tail 1 22666 23631
YP_009002748.1 NC_023498_p97 hypothetical protein phrog_5243 unknown function unknown function 1 59635 59832
YP_009002680.1 NC_023498_p29 lysin A phrog_1519 endolysin lysis 1 24115 25788
YP_009002751.1 NC_023498_p100 hypothetical protein phrog_24868 unknown function unknown function 1 60452 60739
YP_009002708.1 NC_023498_p57 hypothetical protein phrog_301 secreted protein other 1 39687 40025
YP_009002723.1 NC_023498_p72 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44948 45340
YP_009002714.1 NC_023498_p63 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 41893 42780
YP_009002656.1 NC_023498_p5 hypothetical protein phrog_2622 unknown function unknown function 1 1172 1372
YP_009002707.1 NC_023498_p56 hypothetical protein phrog_542 unknown function unknown function 1 39481 39654
YP_009002747.1 NC_023498_p96 hypothetical protein phrog_18965 unknown function unknown function 1 59264 59536
YP_009002699.1 NC_023498_p48 HTH DNA binding protein phrog_1840 excisionase integration and excision 1 36187 36471
YP_009002655.1 NC_023498_p4 hypothetical protein phrog_2074 unknown function unknown function 1 682 942
YP_009002737.1 NC_023498_p86 hypothetical protein phrog_5794 unknown function unknown function 1 54683 54964
YP_009002709.1 NC_023498_p58 hypothetical protein phrog_3186 unknown function unknown function 1 40022 40411
YP_009002668.1 NC_023498_p17 major tail subunit phrog_117 major tail protein tail 1 9492 10103