Genomic map of Staphylococcus phage StauST398-5 (NC_023500)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023500
Definition
Staphylococcus phage StauST398-5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
43301
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
35.13
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009002844.1 NC_023500_p23 hypothetical protein phrog_433 unknown function unknown function 1 11749 11970
YP_009002869.1 NC_023500_p48 hypothetical protein phrog_1404 tail protein tail 1 24456 24797
YP_009002876.1 NC_023500_p55 hypothetical protein phrog_23700 unknown function unknown function 1 34827 34910
YP_009002842.1 NC_023500_p21 dnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10802 11581
YP_009002886.1 NC_023500_p65 hypothetical protein phrog_3446 unknown function unknown function 1 42725 43282
YP_009002866.1 NC_023500_p45 hypothetical protein phrog_176 tail terminator connector 1 22895 23332
YP_009002843.1 NC_023500_p22 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 11575 11736
YP_009002872.1 NC_023500_p51 minor structural protein phrog_663 minor head protein head and packaging 1 28730 30616
YP_009002857.1 NC_023500_p36 large terminase subunit phrog_2 terminase large subunit head and packaging 1 16531 17607
YP_009002873.1 NC_023500_p52 minor structural protein phrog_287 minor tail protein tail 1 30629 32527
YP_009002853.1 NC_023500_p32 hypothetical protein phrog_301 secreted protein other 1 14601 14987
YP_009002847.1 NC_023500_p26 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12639 12947
YP_009002875.1 NC_023500_p54 hypothetical protein phrog_300 tail fiber protein tail 1 34350 34727
YP_009002850.1 NC_023500_p29 hypothetical protein phrog_4872 unknown function unknown function 1 13652 13813
YP_009002830.1 NC_023500_p9 hypothetical protein phrog_2366 unknown function unknown function -1 4431 4640
YP_009002837.1 NC_023500_p16 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6964 7737
YP_009002848.1 NC_023500_p27 hypothetical protein phrog_258 virulence associated other 1 12948 13196
YP_009002878.1 NC_023500_p57 tail tip protein phrog_759 tail associated cell-wall hydrolase other 1 35387 37261
YP_009002831.1 NC_023500_p10 prophage antirepressor phrog_463 anti-repressor transcription regulation 1 4697 5398
YP_009002870.1 NC_023500_p49 tape measure protein phrog_58 tail length tape measure protein tail 1 24800 27769
YP_009002867.1 NC_023500_p46 hypothetical protein phrog_238 major tail protein tail 1 23319 23879
YP_009002838.1 NC_023500_p17 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7767 8318
YP_009002861.1 NC_023500_p40 major capsid protein phrog_544 major head protein head and packaging 1 20673 21497
YP_009002865.1 NC_023500_p44 major tail protein phrog_5 tail completion or Neck1 protein connector 1 22532 22882
YP_009002882.1 NC_023500_p61 amidase phrog_489 endolysin lysis 1 39306 40577
YP_009002826.1 NC_023500_p5 repressor phrog_8 transcriptional regulator transcription regulation -1 3092 3415
YP_009002846.1 NC_023500_p25 hypothetical protein phrog_299 unknown function unknown function 1 12390 12575
YP_009002855.1 NC_023500_p34 hypothetical protein phrog_1058 unknown function unknown function 1 15158 15559
YP_009002836.1 NC_023500_p15 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6485 6964
YP_009002835.1 NC_023500_p14 hypothetical protein singleton unknown function unknown function 1 6321 6470
YP_009002829.1 NC_023500_p8 hypothetical protein phrog_1263 unknown function unknown function 1 4298 4441
YP_009002845.1 NC_023500_p24 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11981 12385
YP_009002824.1 NC_023500_p3 hypothetical protein phrog_4037 unknown function unknown function -1 2097 2600
YP_009002827.1 NC_023500_p6 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 3645 3827
YP_009002822.1 NC_023500_p1 SsrA-binding protein phrog_6791 unknown function unknown function 1 10 474
YP_009002871.1 NC_023500_p50 hypothetical protein phrog_33 distal tail protein Dit tail 1 27784 28719
YP_009002863.1 NC_023500_p42 hypothetical protein phrog_1161 head-tail adaptor connector 1 21840 22154
YP_009002860.1 NC_023500_p39 scaffolding protein phrog_194 head scaffolding protein head and packaging 1 20056 20652
YP_009002874.1 NC_023500_p53 hypothetical protein phrog_257 minor tail protein tail 1 32527 34350
YP_009002885.1 NC_023500_p64 hypothetical protein phrog_1529 unknown function unknown function 1 41889 42089
YP_009002858.1 NC_023500_p37 portal protein phrog_64 portal protein head and packaging 1 17702 19039
YP_009002877.1 NC_023500_p56 hypothetical protein phrog_276 unknown function unknown function 1 34951 35250
YP_009002852.1 NC_023500_p31 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14398 14604
YP_009002859.1 NC_023500_p38 hypothetical protein phrog_115 minor head protein head and packaging 1 19140 19958
YP_009002880.1 NC_023500_p59 hypothetical protein phrog_1262 unknown function unknown function 1 38452 38847
YP_009002839.1 NC_023500_p18 hypothetical protein phrog_398 unknown function unknown function 1 8331 9002
YP_009002862.1 NC_023500_p41 rho terminator factor phrog_390 Arc-like repressor transcription regulation 1 21514 21840
YP_009002849.1 NC_023500_p28 hypothetical protein phrog_266 unknown function unknown function 1 13237 13488
YP_009002879.1 NC_023500_p58 tail fiber phrog_1125 tail fiber protein tail 1 37274 38446
YP_009002868.1 NC_023500_p47 hypothetical protein phrog_183 tail chaperone protein tail 1 23941 24435
YP_009002841.1 NC_023500_p20 replication protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 10022 10792
YP_009002854.1 NC_023500_p33 int activator phrog_152 RinB-like transcriptional activator transcription regulation 1 15023 15157
YP_009002840.1 NC_023500_p19 hypothetical protein phrog_2232 unknown function unknown function -1 9109 9957
YP_009002834.1 NC_023500_p13 hypothetical protein phrog_2182 unknown function unknown function 1 5900 6229
YP_009002851.1 NC_023500_p30 dimeric dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 13828 14361
YP_009002884.1 NC_023500_p63 hypothetical protein phrog_35522 unknown function unknown function 1 41792 41902
YP_009002823.1 NC_023500_p2 hypothetical protein phrog_1 integrase integration and excision -1 986 2035
YP_009002825.1 NC_023500_p4 hypothetical protein phrog_87 metallo-protease other -1 2618 3079
YP_009002828.1 NC_023500_p7 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 3840 4283
YP_009002883.1 NC_023500_p62 hypothetical protein phrog_6149 unknown function unknown function -1 40637 41194
YP_009002833.1 NC_023500_p12 hypothetical protein phrog_24915 unknown function unknown function 1 5712 5807
YP_009002856.1 NC_023500_p35 hypothetical protein phrog_1595 terminase small subunit head and packaging 1 16035 16406
YP_009002881.1 NC_023500_p60 holin protein phrog_263 holin lysis 1 38903 39178
YP_009002832.1 NC_023500_p11 hypothetical protein phrog_5920 unknown function unknown function 1 5423 5632
YP_009002864.1 NC_023500_p43 head-tail adaptor phrog_25 head closure Hc1 connector 1 22147 22482