| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023503 |
Definition |
Streptococcus phage 20617 complete prophage genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
48800 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
39.97 |
Number of singletons |
7 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009003370.1 | NC_023503_p32 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 16177 | 16611 |
| YP_009003398.1 | NC_023503_p60 | hypothetical protein | phrog_12732 | unknown function | unknown function | 1 | 41745 | 42089 |
| YP_009003361.1 | NC_023503_p23 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 13325 | 13564 |
| YP_009003393.1 | NC_023503_p55 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 39233 | 39655 |
| YP_009003356.1 | NC_023503_p18 | hypothetical protein | phrog_3159 | unknown function | unknown function | 1 | 10446 | 10628 |
| YP_009003339.1 | NC_023503_p1 | glycerate kinase | singleton | unknown function | unknown function | 1 | 112 | 966 |
| YP_009003355.1 | NC_023503_p17 | helicase | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9667 | 10449 |
| YP_009003376.1 | NC_023503_p38 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 20127 | 21626 |
| YP_009003382.1 | NC_023503_p44 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 24932 | 25276 |
| YP_009003371.1 | NC_023503_p33 | hypothetical protein | phrog_24146 | unknown function | unknown function | 1 | 16608 | 16856 |
| YP_009003366.1 | NC_023503_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14840 | 14956 |
| YP_009003396.1 | NC_023503_p58 | phage holin | phrog_297 | holin | lysis | 1 | 40171 | 40413 |
| YP_009003401.1 | NC_023503_p63 | hypothetical protein | phrog_11483 | unknown function | unknown function | 1 | 42965 | 43144 |
| YP_009003394.1 | NC_023503_p56 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 39679 | 39825 |
| YP_009003399.1 | NC_023503_p61 | hypothetical protein | phrog_4964 | unknown function | unknown function | 1 | 42111 | 42662 |
| YP_009003354.1 | NC_023503_p16 | phage replication initiation protein | phrog_29927 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9226 | 9654 |
| YP_009003367.1 | NC_023503_p29 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 14977 | 15480 |
| YP_009003388.1 | NC_023503_p50 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 27313 | 27630 |
| YP_009003341.1 | NC_023503_p3 | enolase | phrog_35063 | unknown function | unknown function | 1 | 1669 | 2973 |
| YP_009003349.1 | NC_023503_p11 | excisionase | phrog_904 | excisionase | integration and excision | 1 | 7457 | 7726 |
| YP_009003392.1 | NC_023503_p54 | phage capsid and scaffold protein | phrog_372 | tail protein | tail | 1 | 37208 | 39217 |
| YP_009003390.1 | NC_023503_p52 | phage capsid and scaffold protein | phrog_202 | distal tail protein Dit | tail | 1 | 32236 | 33771 |
| YP_009003377.1 | NC_023503_p39 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 21630 | 22523 |
| YP_009003360.1 | NC_023503_p22 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 12867 | 13328 |
| YP_009003406.1 | NC_023503_p68 | 3-dehydroquinate dehydratase I | singleton | unknown function | unknown function | 1 | 47945 | 48622 |
| YP_009003384.1 | NC_023503_p46 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 25587 | 25925 |
| YP_009003359.1 | NC_023503_p21 | single stranded DNA-binding protein phage associated | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12393 | 12857 |
| YP_009003381.1 | NC_023503_p43 | hypothetical protein | phrog_5279 | unknown function | unknown function | 1 | 24759 | 24914 |
| YP_009003373.1 | NC_023503_p35 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 17846 | 18262 |
| YP_009003386.1 | NC_023503_p48 | phage tail protein | phrog_238 | major tail protein | tail | 1 | 26325 | 26831 |
| YP_009003405.1 | NC_023503_p67 | methyltransferase | phrog_26699 | DNA methyltransferase | other | 1 | 46785 | 47948 |
| YP_009003344.1 | NC_023503_p6 | cl-like repressor | phrog_87 | metallo-protease | other | -1 | 4852 | 5220 |
| YP_009003364.1 | NC_023503_p26 | hypothetical protein | phrog_35322 | unknown function | unknown function | 1 | 13932 | 14114 |
| YP_009003363.1 | NC_023503_p25 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 13722 | 13883 |
| YP_009003372.1 | NC_023503_p34 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 16926 | 17633 |
| YP_009003340.1 | NC_023503_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1005 | 1460 |
| YP_009003374.1 | NC_023503_p36 | phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 18444 | 18896 |
| YP_009003383.1 | NC_023503_p45 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 25273 | 25587 |
| YP_009003347.1 | NC_023503_p9 | hypothetical protein | phrog_1733 | unknown function | unknown function | 1 | 6008 | 6910 |
| YP_009003380.1 | NC_023503_p42 | phage major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 23697 | 24743 |
| YP_009003400.1 | NC_023503_p62 | hypothetical protein | phrog_16094 | unknown function | unknown function | 1 | 42688 | 42939 |
| YP_009003378.1 | NC_023503_p40 | phage capsid and scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 22705 | 23298 |
| YP_009003353.1 | NC_023503_p15 | hypothetical protein | phrog_5968 | replisome organizer | DNA, RNA and nucleotide metabolism | 1 | 8807 | 9253 |
| YP_009003402.1 | NC_023503_p64 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 43203 | 43625 |
| YP_009003391.1 | NC_023503_p53 | phage capsid and scaffold protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 33771 | 37205 |
| YP_009003387.1 | NC_023503_p49 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 26909 | 27262 |
| YP_009003397.1 | NC_023503_p59 | phage lysin | phrog_998 | endolysin | lysis | 1 | 40415 | 41260 |
| YP_009003342.1 | NC_023503_p4 | phage integrase | phrog_1 | integrase | integration and excision | -1 | 3033 | 4202 |
| YP_009003362.1 | NC_023503_p24 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 13552 | 13725 |
| YP_009003348.1 | NC_023503_p10 | hypothetical protein | phrog_2902 | anti-repressor | transcription regulation | 1 | 6903 | 7451 |
| YP_009003351.1 | NC_023503_p13 | hypothetical protein | phrog_17359 | unknown function | unknown function | 1 | 8150 | 8413 |
| YP_009003346.1 | NC_023503_p8 | cro-repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 5763 | 5990 |
| YP_009003357.1 | NC_023503_p19 | recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10754 | 11410 |
| YP_009003343.1 | NC_023503_p5 | hypothetical protein | phrog_4980 | superinfection exclusion | moron, auxiliary metabolic gene and host takeover | -1 | 4344 | 4772 |
| YP_009003403.1 | NC_023503_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44090 | 44275 |
| YP_009003368.1 | NC_023503_p30 | phage DNA-binding protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 15481 | 15903 |
| YP_009003389.1 | NC_023503_p51 | phage tail fiber | phrog_1204 | tail protein | tail | 1 | 27620 | 32236 |
| YP_009003352.1 | NC_023503_p14 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 8432 | 8590 |
| YP_009003395.1 | NC_023503_p57 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 39839 | 40162 |
| YP_009003379.1 | NC_023503_p41 | phage major capsid protein | phrog_909 | major head protein | head and packaging | 1 | 23315 | 23674 |
| YP_009003350.1 | NC_023503_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7704 | 8012 |
| YP_009003369.1 | NC_023503_p31 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 15872 | 16180 |
| YP_009003404.1 | NC_023503_p66 | lipoteichoic acid synthase | singleton | unknown function | unknown function | -1 | 44437 | 46479 |
| YP_009003385.1 | NC_023503_p47 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 25927 | 26313 |
| YP_009003375.1 | NC_023503_p37 | phage terminase small subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 18883 | 20118 |
| YP_009003345.1 | NC_023503_p7 | cl-like repressor phage associated | phrog_8 | transcriptional regulator | transcription regulation | -1 | 5227 | 5577 |
| YP_009003365.1 | NC_023503_p27 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 14242 | 14856 |
| YP_009003358.1 | NC_023503_p20 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 11413 | 12372 |