Genomic map of Citrobacter phage CR8 (NC_023548)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023548
Definition
Citrobacter phage CR8 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Caroctavirus; Citrobacter virus CR8.
DB of origin
REFSEQ
Length
39651
Host Name
Citrobacter rodentium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
49.68
Number of singletons
8
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009004182.1 NC_023548_p27 hypothetical protein phrog_13039 unknown function unknown function 1 13517 13690
YP_009004162.1 NC_023548_p6 hypothetical protein phrog_15752 protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE other 1 1875 2603
YP_009004193.1 NC_023548_p38 predicted head to tail connector protein phrog_449 head-tail adaptor connector 1 18988 20565
YP_009004187.1 NC_023548_p32 conserved hypotetical phage protein phrog_1334 unknown function unknown function 1 16475 16684
YP_009004191.1 NC_023548_p36 predicted host specificity protein A phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18240 18638
YP_009004165.1 NC_023548_p10 predicted RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3460 6132
YP_009004158.1 NC_023548_p2 hypothetical protein singleton unknown function unknown function 1 951 1106
YP_009004195.1 NC_023548_p40 predicted minor capsid protein phrog_267 major head protein head and packaging 1 21579 22870
YP_009004183.1 NC_023548_p28 predicted DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13760 15931
YP_009004184.1 NC_023548_p29 hypothethical phage protein phrog_18049 unknown function unknown function 1 15931 16158
YP_009004170.1 NC_023548_p15 hypothetical protein phrog_1777 unknown function unknown function 1 8118 8369
YP_009004172.1 NC_023548_p17 predicted bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 8948 9121
YP_009004180.1 NC_023548_p25 hypothetical protein phrog_5140 unknown function unknown function 1 12945 13241
YP_009004189.1 NC_023548_p34 hypotetical phage protein phrog_1447 unknown function unknown function 1 17738 18013
YP_009004192.1 NC_023548_p37 phage virion protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18642 18893
YP_009004160.1 NC_023548_p4 hypothetical protein singleton unknown function unknown function 1 1493 1651
YP_009004200.1 NC_023548_p45 predicted internal virion protein B phrog_805 internal virion protein head and packaging 1 26419 27009
YP_009004175.1 NC_023548_p20 hypothetical protein singleton unknown function unknown function 1 10332 10760
YP_009004159.1 NC_023548_p3 predicted antirestriction protein phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 1135 1470
YP_009004168.1 NC_023548_p13 host inhibitor and predicted target for F plasmid exclusion phrog_2949 dGTPase inhibitor; target for F exclusion other 1 6615 6878
YP_009004166.1 NC_023548_p11 hypothetical protein singleton unknown function unknown function 1 6145 6282
YP_009004173.1 NC_023548_p18 predicted helix-destabilizing protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9175 9879
YP_009004205.1 NC_023548_p50 predicted lysis protein phrog_920 holin lysis 1 35585 35782
YP_009004196.1 NC_023548_p41 predicted major capsid protein phrog_267 major head protein head and packaging 1 21579 22616
YP_009004202.1 NC_023548_p47 predicted internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29304 33200
YP_009004188.1 NC_023548_p33 predicted exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16684 17550
YP_009004190.1 NC_023548_p35 conserved phage virion protein phrog_1391 unknown function unknown function 1 18018 18233
YP_009004181.1 NC_023548_p26 hypothetical protein phrog_18700 unknown function unknown function 1 13231 13686
YP_009004167.1 NC_023548_p12 hypothetical protein singleton unknown function unknown function 1 6458 6610
YP_009004157.1 NC_023548_p1 hypothetical protein singleton unknown function unknown function 1 756 887
YP_009004208.1 NC_023548_p53 hypothethical phage protein phrog_4306 Rz-like spanin lysis 1 36258 36515
YP_009004211.1 NC_023548_p56 hypothetical protein singleton unknown function unknown function 1 37662 37829
YP_009004161.1 NC_023548_p5 hypothetical protein phrog_7202 unknown function unknown function 1 1673 1810
YP_009004176.1 NC_023548_p21 predicted amidase (lysozyme) phrog_822 amidase lysis 1 10750 11208
YP_009028570.1 NC_023548_p7 hypothetical protein singleton unknown function unknown function 1 2673 2777
YP_009004210.1 NC_023548_p55 predicted DNA packaging protein B or DNA maturase B phrog_38 terminase large subunit head and packaging 1 37019 38779
YP_009004185.1 NC_023548_p30 hypothetical protein phrog_17900 unknown function unknown function 1 16173 16684
YP_009004177.1 NC_023548_p22 hypothetical protein phrog_1950 unknown function unknown function 1 11214 11444
YP_009004171.1 NC_023548_p16 hypothetical protein phrog_4521 unknown function unknown function 1 8366 8869
YP_009004212.2 NC_023548_p57 hypothetical protein phrog_2193 unknown function unknown function 1 39021 39191
YP_009004198.1 NC_023548_p43 predicted tail tube protein B phrog_457 tail protein tail 1 23516 25882
YP_009004206.1 NC_023548_p51 predicted DNA packaging protein A or DNA maturase A phrog_1351 terminase small subunit head and packaging 1 35779 36048
YP_009004178.1 NC_023548_p23 predicted primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11531 13222
YP_009004163.1 NC_023548_p8 hypothetical protein phrog_2385 unknown function unknown function 1 2781 2975
YP_009004194.1 NC_023548_p39 predicted capsid assembly protein phrog_1052 head assembly head and packaging 1 20629 21504
YP_009004201.1 NC_023548_p46 predicted internal virion protein C phrog_1339 internal virion protein head and packaging 1 27019 29301
YP_009004179.1 NC_023548_p24 predicted helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11678 13222
YP_009004204.1 NC_023548_p49 phage virion protein phrog_22156 unknown function unknown function 1 34728 35543
YP_009004199.1 NC_023548_p44 predicted internal virion protein A phrog_308 internal virion protein head and packaging 1 25959 26426
YP_009004197.1 NC_023548_p42 predicted tail tube protein A phrog_446 tail protein tail 1 22938 23504
YP_009004207.1 NC_023548_p52 hypothetical protein phrog_1327 Rz-like spanin lysis 1 36146 36589
YP_009004186.1 NC_023548_p31 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16173 16475
YP_009004174.1 NC_023548_p19 predicted endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 9883 10335
YP_009004169.1 NC_023548_p14 predicted DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6878 7924
YP_009004164.1 NC_023548_p9 hypothetical protein phrog_7066 unknown function unknown function 1 2975 3331
YP_009004203.1 NC_023548_p48 predicted tail fiber protein phrog_31166 tail fiber protein tail 1 33271 34728
YP_009004209.1 NC_023548_p54 predicted homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36586 37026