| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023548 |
Definition |
Citrobacter phage CR8 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Caroctavirus; Citrobacter virus CR8. |
DB of origin |
REFSEQ |
Length |
39651 |
Host Name |
Citrobacter rodentium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
49.68 |
Number of singletons |
8 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009004182.1 | NC_023548_p27 | hypothetical protein | phrog_13039 | unknown function | unknown function | 1 | 13517 | 13690 |
| YP_009004162.1 | NC_023548_p6 | hypothetical protein | phrog_15752 | protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE | other | 1 | 1875 | 2603 |
| YP_009004193.1 | NC_023548_p38 | predicted head to tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 18988 | 20565 |
| YP_009004187.1 | NC_023548_p32 | conserved hypotetical phage protein | phrog_1334 | unknown function | unknown function | 1 | 16475 | 16684 |
| YP_009004191.1 | NC_023548_p36 | predicted host specificity protein A | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18240 | 18638 |
| YP_009004165.1 | NC_023548_p10 | predicted RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3460 | 6132 |
| YP_009004158.1 | NC_023548_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 951 | 1106 |
| YP_009004195.1 | NC_023548_p40 | predicted minor capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21579 | 22870 |
| YP_009004183.1 | NC_023548_p28 | predicted DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13760 | 15931 |
| YP_009004184.1 | NC_023548_p29 | hypothethical phage protein | phrog_18049 | unknown function | unknown function | 1 | 15931 | 16158 |
| YP_009004170.1 | NC_023548_p15 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8118 | 8369 |
| YP_009004172.1 | NC_023548_p17 | predicted bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8948 | 9121 |
| YP_009004180.1 | NC_023548_p25 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 12945 | 13241 |
| YP_009004189.1 | NC_023548_p34 | hypotetical phage protein | phrog_1447 | unknown function | unknown function | 1 | 17738 | 18013 |
| YP_009004192.1 | NC_023548_p37 | phage virion protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18642 | 18893 |
| YP_009004160.1 | NC_023548_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1493 | 1651 |
| YP_009004200.1 | NC_023548_p45 | predicted internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26419 | 27009 |
| YP_009004175.1 | NC_023548_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10332 | 10760 |
| YP_009004159.1 | NC_023548_p3 | predicted antirestriction protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 1135 | 1470 |
| YP_009004168.1 | NC_023548_p13 | host inhibitor and predicted target for F plasmid exclusion | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6615 | 6878 |
| YP_009004166.1 | NC_023548_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6145 | 6282 |
| YP_009004173.1 | NC_023548_p18 | predicted helix-destabilizing protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9175 | 9879 |
| YP_009004205.1 | NC_023548_p50 | predicted lysis protein | phrog_920 | holin | lysis | 1 | 35585 | 35782 |
| YP_009004196.1 | NC_023548_p41 | predicted major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21579 | 22616 |
| YP_009004202.1 | NC_023548_p47 | predicted internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29304 | 33200 |
| YP_009004188.1 | NC_023548_p33 | predicted exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16684 | 17550 |
| YP_009004190.1 | NC_023548_p35 | conserved phage virion protein | phrog_1391 | unknown function | unknown function | 1 | 18018 | 18233 |
| YP_009004181.1 | NC_023548_p26 | hypothetical protein | phrog_18700 | unknown function | unknown function | 1 | 13231 | 13686 |
| YP_009004167.1 | NC_023548_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6458 | 6610 |
| YP_009004157.1 | NC_023548_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 756 | 887 |
| YP_009004208.1 | NC_023548_p53 | hypothethical phage protein | phrog_4306 | Rz-like spanin | lysis | 1 | 36258 | 36515 |
| YP_009004211.1 | NC_023548_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37662 | 37829 |
| YP_009004161.1 | NC_023548_p5 | hypothetical protein | phrog_7202 | unknown function | unknown function | 1 | 1673 | 1810 |
| YP_009004176.1 | NC_023548_p21 | predicted amidase (lysozyme) | phrog_822 | amidase | lysis | 1 | 10750 | 11208 |
| YP_009028570.1 | NC_023548_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2673 | 2777 |
| YP_009004210.1 | NC_023548_p55 | predicted DNA packaging protein B or DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 37019 | 38779 |
| YP_009004185.1 | NC_023548_p30 | hypothetical protein | phrog_17900 | unknown function | unknown function | 1 | 16173 | 16684 |
| YP_009004177.1 | NC_023548_p22 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 11214 | 11444 |
| YP_009004171.1 | NC_023548_p16 | hypothetical protein | phrog_4521 | unknown function | unknown function | 1 | 8366 | 8869 |
| YP_009004212.2 | NC_023548_p57 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 39021 | 39191 |
| YP_009004198.1 | NC_023548_p43 | predicted tail tube protein B | phrog_457 | tail protein | tail | 1 | 23516 | 25882 |
| YP_009004206.1 | NC_023548_p51 | predicted DNA packaging protein A or DNA maturase A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35779 | 36048 |
| YP_009004178.1 | NC_023548_p23 | predicted primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11531 | 13222 |
| YP_009004163.1 | NC_023548_p8 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 2781 | 2975 |
| YP_009004194.1 | NC_023548_p39 | predicted capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20629 | 21504 |
| YP_009004201.1 | NC_023548_p46 | predicted internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27019 | 29301 |
| YP_009004179.1 | NC_023548_p24 | predicted helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11678 | 13222 |
| YP_009004204.1 | NC_023548_p49 | phage virion protein | phrog_22156 | unknown function | unknown function | 1 | 34728 | 35543 |
| YP_009004199.1 | NC_023548_p44 | predicted internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 25959 | 26426 |
| YP_009004197.1 | NC_023548_p42 | predicted tail tube protein A | phrog_446 | tail protein | tail | 1 | 22938 | 23504 |
| YP_009004207.1 | NC_023548_p52 | hypothetical protein | phrog_1327 | Rz-like spanin | lysis | 1 | 36146 | 36589 |
| YP_009004186.1 | NC_023548_p31 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16173 | 16475 |
| YP_009004174.1 | NC_023548_p19 | predicted endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9883 | 10335 |
| YP_009004169.1 | NC_023548_p14 | predicted DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6878 | 7924 |
| YP_009004164.1 | NC_023548_p9 | hypothetical protein | phrog_7066 | unknown function | unknown function | 1 | 2975 | 3331 |
| YP_009004203.1 | NC_023548_p48 | predicted tail fiber protein | phrog_31166 | tail fiber protein | tail | 1 | 33271 | 34728 |
| YP_009004209.1 | NC_023548_p54 | predicted homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36586 | 37026 |