| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023549 |
Definition |
Clavibacter phage CN1A, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cinunavirus; Clavibacter virus CN1A. |
DB of origin |
REFSEQ |
Length |
56789 |
Host Name |
Clavibacter michiganensis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
62.08 |
Number of singletons |
42 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009004287.1 | NC_023549_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54604 | 54777 |
| YP_009004257.1 | NC_023549_p45 | hypothetical protein | phrog_2491 | major tail protein | tail | -1 | 32879 | 33391 |
| YP_009004288.1 | NC_023549_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54920 | 55102 |
| YP_009004249.1 | NC_023549_p37 | hypothetical protein | phrog_30445 | unknown function | unknown function | -1 | 22959 | 23642 |
| YP_009004282.1 | NC_023549_p70 | hypothetical protein | phrog_1229 | unknown function | unknown function | -1 | 52757 | 53137 |
| YP_009004264.1 | NC_023549_p52 | tail fiber protein | phrog_9703 | head decoration | head and packaging | -1 | 40337 | 41950 |
| YP_009004289.1 | NC_023549_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55099 | 55332 |
| YP_009004262.1 | NC_023549_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37959 | 38141 |
| YP_009004278.1 | NC_023549_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51459 | 51773 |
| YP_009004238.1 | NC_023549_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17304 | 17558 |
| YP_009004228.1 | NC_023549_p16 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9363 | 10094 |
| YP_009004272.1 | NC_023549_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49525 | 49998 |
| YP_009004221.1 | NC_023549_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4414 | 4941 |
| YP_009004235.1 | NC_023549_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14911 | 15183 |
| YP_009004231.1 | NC_023549_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11199 | 11399 |
| YP_009004277.1 | NC_023549_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51187 | 51462 |
| YP_009004229.1 | NC_023549_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10094 | 10318 |
| YP_009004222.1 | NC_023549_p10 | hypothetical protein | phrog_8332 | unknown function | unknown function | 1 | 4938 | 5642 |
| YP_009004215.1 | NC_023549_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2221 | 2463 |
| YP_009004260.1 | NC_023549_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34078 | 34500 |
| YP_009004230.1 | NC_023549_p18 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 10315 | 11211 |
| YP_009004217.1 | NC_023549_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2579 | 2884 |
| YP_009004280.1 | NC_023549_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52191 | 52343 |
| YP_009004234.1 | NC_023549_p22 | hypothetical protein | phrog_10514 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 12630 | 14858 |
| YP_009004240.1 | NC_023549_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18017 | 18268 |
| YP_009004263.1 | NC_023549_p51 | glycerophosphoryl diester phosphodiesterase | phrog_17803 | phosphodiesterase | other | -1 | 38151 | 40337 |
| YP_009004219.1 | NC_023549_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3466 | 3996 |
| YP_009004244.1 | NC_023549_p32 | GIY-YIG Endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | -1 | 19273 | 19752 |
| YP_009004239.1 | NC_023549_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17545 | 17925 |
| YP_009004232.1 | NC_023549_p20 | DNA polymerase III epsilon subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 11396 | 12094 |
| YP_009004213.1 | NC_023549_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1153 | 1509 |
| YP_009004275.1 | NC_023549_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50845 | 50982 |
| YP_009004247.1 | NC_023549_p35 | holin/anti-holin | singleton | unknown function | unknown function | -1 | 21662 | 22063 |
| YP_009004276.1 | NC_023549_p64 | thymidylate kinase | phrog_236 | nucleotide kinase | other | -1 | 50979 | 51194 |
| YP_009004254.1 | NC_023549_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30975 | 31223 |
| YP_009004266.1 | NC_023549_p54 | hypothetical protein | phrog_18316 | unknown function | unknown function | -1 | 42459 | 42755 |
| YP_009004286.1 | NC_023549_p74 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 53856 | 54320 |
| YP_009004253.1 | NC_023549_p41 | tape measure | phrog_28 | tail length tape measure protein | tail | -1 | 26610 | 30920 |
| YP_009004220.1 | NC_023549_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3993 | 4373 |
| YP_009004267.1 | NC_023549_p55 | hypothetical protein | phrog_133 | head maturation protease | head and packaging | -1 | 43006 | 44148 |
| YP_009004283.1 | NC_023549_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53168 | 53299 |
| YP_009004281.1 | NC_023549_p69 | hypothetical protein | phrog_34264 | unknown function | unknown function | -1 | 52461 | 52748 |
| YP_009004248.1 | NC_023549_p36 | endolysin | phrog_16823 | tail length tape measure protein | tail | -1 | 22087 | 22959 |
| YP_009004246.1 | NC_023549_p34 | holin/anti-holin | singleton | unknown function | unknown function | -1 | 21250 | 21669 |
| YP_009004227.1 | NC_023549_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8344 | 8784 |
| YP_009004274.1 | NC_023549_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50655 | 50852 |
| YP_009004285.1 | NC_023549_p73 | hypothetical protein | phrog_34264 | unknown function | unknown function | -1 | 53545 | 53859 |
| YP_009004270.1 | NC_023549_p58 | hypothetical protein | phrog_10963 | portal protein | head and packaging | -1 | 45484 | 46863 |
| YP_009004233.1 | NC_023549_p21 | single stranded DNA-binding protein | singleton | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12130 | 12504 |
| YP_009004279.1 | NC_023549_p67 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 51770 | 52198 |
| YP_009004256.1 | NC_023549_p44 | capsid protein | phrog_2491 | major tail protein | tail | -1 | 32088 | 32879 |
| YP_009004243.1 | NC_023549_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18998 | 19276 |
| YP_009004218.1 | NC_023549_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2911 | 3057 |
| YP_009004265.1 | NC_023549_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41947 | 42459 |
| YP_009004236.1 | NC_023549_p24 | PseT polynucleotide 5'-kinase and 3'-phosphatase | phrog_505 | polynucleotide kinase | other | 1 | 15180 | 16079 |
| YP_009004224.1 | NC_023549_p12 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 5964 | 6377 |
| YP_009004255.1 | NC_023549_p43 | hypothetical protein | phrog_15960 | tail assembly chaperone | tail | -1 | 31364 | 32005 |
| YP_009004237.1 | NC_023549_p25 | RNA ligase | phrog_562 | RNA ligase and tail fiber protein attachment catalyst | tail | 1 | 16090 | 17124 |
| YP_009004225.1 | NC_023549_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6374 | 6649 |
| YP_009004226.1 | NC_023549_p14 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 6751 | 8316 |
| YP_009004242.1 | NC_023549_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18726 | 18872 |
| YP_009004216.1 | NC_023549_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2502 | 2582 |
| YP_009004241.1 | NC_023549_p29 | hypothetical protein | phrog_1981 | unknown function | unknown function | 1 | 18265 | 18729 |
| YP_009004273.1 | NC_023549_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50504 | 50665 |
| YP_009004284.1 | NC_023549_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53299 | 53535 |
| YP_009004245.1 | NC_023549_p33 | metallophosphatase | phrog_20266 | metallo-phosphoesterase | other | -1 | 19855 | 21189 |
| YP_009004269.1 | NC_023549_p57 | hypothetical protein | phrog_15531 | head maturation protease | head and packaging | -1 | 44523 | 45536 |
| YP_009004250.1 | NC_023549_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23652 | 23897 |
| YP_009004223.1 | NC_023549_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5711 | 5944 |
| YP_009004251.1 | NC_023549_p39 | structural protein | phrog_14644 | tail protein | tail | -1 | 23900 | 25759 |
| YP_009004268.1 | NC_023549_p56 | hypothetical protein | phrog_122 | head decoration | head and packaging | -1 | 44161 | 44523 |
| YP_009004261.1 | NC_023549_p49 | tail fiber protein | phrog_11419 | tail fiber protein | tail | -1 | 34500 | 37955 |
| YP_009004259.1 | NC_023549_p47 | hypothetical protein | phrog_14948 | unknown function | unknown function | -1 | 33614 | 34081 |
| YP_009004290.1 | NC_023549_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55332 | 55583 |
| YP_009004214.1 | NC_023549_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1506 | 1805 |
| YP_009004258.1 | NC_023549_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33391 | 33609 |
| YP_009004252.1 | NC_023549_p40 | hypothetical protein | phrog_20280 | minor tail protein | tail | -1 | 25744 | 26610 |
| YP_009004271.1 | NC_023549_p59 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 47000 | 49528 |