Genomic map of Clavibacter phage CN1A (NC_023549)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023549
Definition
Clavibacter phage CN1A, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cinunavirus; Clavibacter virus CN1A.
DB of origin
REFSEQ
Length
56789
Host Name
Clavibacter michiganensis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
78
%GC
62.08
Number of singletons
42
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009004287.1 NC_023549_p75 hypothetical protein singleton unknown function unknown function -1 54604 54777
YP_009004257.1 NC_023549_p45 hypothetical protein phrog_2491 major tail protein tail -1 32879 33391
YP_009004288.1 NC_023549_p76 hypothetical protein singleton unknown function unknown function -1 54920 55102
YP_009004249.1 NC_023549_p37 hypothetical protein phrog_30445 unknown function unknown function -1 22959 23642
YP_009004282.1 NC_023549_p70 hypothetical protein phrog_1229 unknown function unknown function -1 52757 53137
YP_009004264.1 NC_023549_p52 tail fiber protein phrog_9703 head decoration head and packaging -1 40337 41950
YP_009004289.1 NC_023549_p77 hypothetical protein singleton unknown function unknown function -1 55099 55332
YP_009004262.1 NC_023549_p50 hypothetical protein singleton unknown function unknown function -1 37959 38141
YP_009004278.1 NC_023549_p66 hypothetical protein singleton unknown function unknown function -1 51459 51773
YP_009004238.1 NC_023549_p26 hypothetical protein singleton unknown function unknown function 1 17304 17558
YP_009004228.1 NC_023549_p16 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9363 10094
YP_009004272.1 NC_023549_p60 hypothetical protein singleton unknown function unknown function -1 49525 49998
YP_009004221.1 NC_023549_p9 hypothetical protein singleton unknown function unknown function 1 4414 4941
YP_009004235.1 NC_023549_p23 hypothetical protein singleton unknown function unknown function 1 14911 15183
YP_009004231.1 NC_023549_p19 hypothetical protein singleton unknown function unknown function 1 11199 11399
YP_009004277.1 NC_023549_p65 hypothetical protein singleton unknown function unknown function -1 51187 51462
YP_009004229.1 NC_023549_p17 hypothetical protein singleton unknown function unknown function 1 10094 10318
YP_009004222.1 NC_023549_p10 hypothetical protein phrog_8332 unknown function unknown function 1 4938 5642
YP_009004215.1 NC_023549_p3 hypothetical protein singleton unknown function unknown function 1 2221 2463
YP_009004260.1 NC_023549_p48 hypothetical protein singleton unknown function unknown function -1 34078 34500
YP_009004230.1 NC_023549_p18 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism 1 10315 11211
YP_009004217.1 NC_023549_p5 hypothetical protein singleton unknown function unknown function 1 2579 2884
YP_009004280.1 NC_023549_p68 hypothetical protein singleton unknown function unknown function -1 52191 52343
YP_009004234.1 NC_023549_p22 hypothetical protein phrog_10514 DNA primase DNA, RNA and nucleotide metabolism 1 12630 14858
YP_009004240.1 NC_023549_p28 hypothetical protein singleton unknown function unknown function 1 18017 18268
YP_009004263.1 NC_023549_p51 glycerophosphoryl diester phosphodiesterase phrog_17803 phosphodiesterase other -1 38151 40337
YP_009004219.1 NC_023549_p7 hypothetical protein singleton unknown function unknown function 1 3466 3996
YP_009004244.1 NC_023549_p32 GIY-YIG Endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism -1 19273 19752
YP_009004239.1 NC_023549_p27 hypothetical protein singleton unknown function unknown function 1 17545 17925
YP_009004232.1 NC_023549_p20 DNA polymerase III epsilon subunit phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 11396 12094
YP_009004213.1 NC_023549_p1 hypothetical protein singleton unknown function unknown function 1 1153 1509
YP_009004275.1 NC_023549_p63 hypothetical protein singleton unknown function unknown function -1 50845 50982
YP_009004247.1 NC_023549_p35 holin/anti-holin singleton unknown function unknown function -1 21662 22063
YP_009004276.1 NC_023549_p64 thymidylate kinase phrog_236 nucleotide kinase other -1 50979 51194
YP_009004254.1 NC_023549_p42 hypothetical protein singleton unknown function unknown function -1 30975 31223
YP_009004266.1 NC_023549_p54 hypothetical protein phrog_18316 unknown function unknown function -1 42459 42755
YP_009004286.1 NC_023549_p74 HNH endonuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism -1 53856 54320
YP_009004253.1 NC_023549_p41 tape measure phrog_28 tail length tape measure protein tail -1 26610 30920
YP_009004220.1 NC_023549_p8 hypothetical protein singleton unknown function unknown function 1 3993 4373
YP_009004267.1 NC_023549_p55 hypothetical protein phrog_133 head maturation protease head and packaging -1 43006 44148
YP_009004283.1 NC_023549_p71 hypothetical protein singleton unknown function unknown function -1 53168 53299
YP_009004281.1 NC_023549_p69 hypothetical protein phrog_34264 unknown function unknown function -1 52461 52748
YP_009004248.1 NC_023549_p36 endolysin phrog_16823 tail length tape measure protein tail -1 22087 22959
YP_009004246.1 NC_023549_p34 holin/anti-holin singleton unknown function unknown function -1 21250 21669
YP_009004227.1 NC_023549_p15 hypothetical protein singleton unknown function unknown function 1 8344 8784
YP_009004274.1 NC_023549_p62 hypothetical protein singleton unknown function unknown function -1 50655 50852
YP_009004285.1 NC_023549_p73 hypothetical protein phrog_34264 unknown function unknown function -1 53545 53859
YP_009004270.1 NC_023549_p58 hypothetical protein phrog_10963 portal protein head and packaging -1 45484 46863
YP_009004233.1 NC_023549_p21 single stranded DNA-binding protein singleton single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 12130 12504
YP_009004279.1 NC_023549_p67 HNH endonuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism -1 51770 52198
YP_009004256.1 NC_023549_p44 capsid protein phrog_2491 major tail protein tail -1 32088 32879
YP_009004243.1 NC_023549_p31 hypothetical protein singleton unknown function unknown function -1 18998 19276
YP_009004218.1 NC_023549_p6 hypothetical protein singleton unknown function unknown function 1 2911 3057
YP_009004265.1 NC_023549_p53 hypothetical protein singleton unknown function unknown function -1 41947 42459
YP_009004236.1 NC_023549_p24 PseT polynucleotide 5'-kinase and 3'-phosphatase phrog_505 polynucleotide kinase other 1 15180 16079
YP_009004224.1 NC_023549_p12 hypothetical protein phrog_572 unknown function unknown function 1 5964 6377
YP_009004255.1 NC_023549_p43 hypothetical protein phrog_15960 tail assembly chaperone tail -1 31364 32005
YP_009004237.1 NC_023549_p25 RNA ligase phrog_562 RNA ligase and tail fiber protein attachment catalyst tail 1 16090 17124
YP_009004225.1 NC_023549_p13 hypothetical protein singleton unknown function unknown function 1 6374 6649
YP_009004226.1 NC_023549_p14 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 6751 8316
YP_009004242.1 NC_023549_p30 hypothetical protein singleton unknown function unknown function 1 18726 18872
YP_009004216.1 NC_023549_p4 hypothetical protein singleton unknown function unknown function 1 2502 2582
YP_009004241.1 NC_023549_p29 hypothetical protein phrog_1981 unknown function unknown function 1 18265 18729
YP_009004273.1 NC_023549_p61 hypothetical protein singleton unknown function unknown function -1 50504 50665
YP_009004284.1 NC_023549_p72 hypothetical protein singleton unknown function unknown function -1 53299 53535
YP_009004245.1 NC_023549_p33 metallophosphatase phrog_20266 metallo-phosphoesterase other -1 19855 21189
YP_009004269.1 NC_023549_p57 hypothetical protein phrog_15531 head maturation protease head and packaging -1 44523 45536
YP_009004250.1 NC_023549_p38 hypothetical protein singleton unknown function unknown function -1 23652 23897
YP_009004223.1 NC_023549_p11 hypothetical protein singleton unknown function unknown function 1 5711 5944
YP_009004251.1 NC_023549_p39 structural protein phrog_14644 tail protein tail -1 23900 25759
YP_009004268.1 NC_023549_p56 hypothetical protein phrog_122 head decoration head and packaging -1 44161 44523
YP_009004261.1 NC_023549_p49 tail fiber protein phrog_11419 tail fiber protein tail -1 34500 37955
YP_009004259.1 NC_023549_p47 hypothetical protein phrog_14948 unknown function unknown function -1 33614 34081
YP_009004290.1 NC_023549_p78 hypothetical protein singleton unknown function unknown function -1 55332 55583
YP_009004214.1 NC_023549_p2 hypothetical protein singleton unknown function unknown function 1 1506 1805
YP_009004258.1 NC_023549_p46 hypothetical protein singleton unknown function unknown function -1 33391 33609
YP_009004252.1 NC_023549_p40 hypothetical protein phrog_20280 minor tail protein tail -1 25744 26610
YP_009004271.1 NC_023549_p59 terminase large subunit phrog_2 terminase large subunit head and packaging -1 47000 49528