Genomic map of Staphylococcus phage GRCS (NC_023550)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023550
Definition
Staphylococcus phage GRCS, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus GRCS.
DB of origin
REFSEQ
Length
17869
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
21
%GC
28.89
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009004301.1 NC_023550_p11 amidase phrog_5979 unknown function unknown function -1 6589 8028
YP_009004294.1 NC_023550_p4 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 1218 1580
YP_009004293.1 NC_023550_p3 hypothetical protein phrog_6346 unknown function unknown function 1 958 1194
YP_009004305.1 NC_023550_p15 endolysin phrog_635 endolysin lysis -1 11240 11992
YP_009004303.1 NC_023550_p13 major tail protein phrog_2248 tail protein tail -1 8428 10191
YP_009004308.1 NC_023550_p18 upper collar protein phrog_2038 upper collar connector connector -1 14709 15692
YP_009004297.1 NC_023550_p7 hypothetical protein phrog_8543 unknown function unknown function 1 2227 2394
YP_009004291.1 NC_023550_p1 hypothetical protein phrog_10178 unknown function unknown function 1 448 645
YP_009004292.1 NC_023550_p2 hypothetical protein phrog_6274 unknown function unknown function 1 638 940
YP_009004309.1 NC_023550_p19 major capsid protein phrog_2006 major head protein head and packaging -1 15708 16937
YP_009004295.1 NC_023550_p5 hypothetical protein phrog_7019 unknown function unknown function 1 1639 1815
YP_009004300.1 NC_023550_p10 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 4189 6474
YP_009004310.1 NC_023550_p20 hypothetical protein phrog_6289 unknown function unknown function -1 16944 17126
YP_009004299.1 NC_023550_p9 encapsidation protein phrog_2150 terminase head and packaging 1 2927 4174
YP_009004311.1 NC_023550_p21 hypothetical protein phrog_7102 unknown function unknown function -1 17139 17474
YP_009004307.1 NC_023550_p17 lower collar protein phrog_3225 adaptor Ad4 connector -1 13961 14716
YP_009004296.1 NC_023550_p6 hypothetical protein phrog_7529 unknown function unknown function 1 1818 2234
YP_009004302.1 NC_023550_p12 holin phrog_199 holin lysis -1 8003 8425
YP_009004306.1 NC_023550_p16 minor structure protein phrog_287 minor tail protein tail -1 12004 13947
YP_009004304.1 NC_023550_p14 minor tail protein phrog_9604 tail protein tail -1 10248 11177
YP_009004298.1 NC_023550_p8 hypothetical protein phrog_6099 unknown function unknown function 1 2421 2879