| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023552 |
Definition |
Mycobacterium phage Donovan, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pclasvirinae; Fishburnevirus. |
DB of origin |
REFSEQ |
Length |
47162 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
67.18 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009004436.1 | NC_023552_p65 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 42034 | 42936 |
| YP_009004423.1 | NC_023552_p52 | hypothetical protein | phrog_2233 | unknown function | unknown function | 1 | 35711 | 36400 |
| YP_009004425.1 | NC_023552_p54 | HTH DNA binding protein | phrog_17383 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36798 | 37037 |
| YP_009004392.1 | NC_023552_p21 | minor tail protein | phrog_3493 | minor tail protein | tail | 1 | 19027 | 21288 |
| YP_009004408.1 | NC_023552_p37 | hypothetical protein | phrog_5015 | unknown function | unknown function | 1 | 29365 | 29763 |
| YP_009004399.1 | NC_023552_p28 | hypothetical protein | phrog_443 | holin | lysis | 1 | 25229 | 25477 |
| YP_009004377.1 | NC_023552_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5299 | 6243 |
| YP_009004393.1 | NC_023552_p22 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 21288 | 22325 |
| YP_009004374.1 | NC_023552_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 2106 | 3569 |
| YP_009004373.1 | NC_023552_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 413 | 2089 |
| YP_009004375.1 | NC_023552_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3560 | 4894 |
| YP_009004433.1 | NC_023552_p62 | HTH DNA binding protein | phrog_1408 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 40357 | 41247 |
| YP_009004402.1 | NC_023552_p31 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 26968 | 27369 |
| YP_009004409.1 | NC_023552_p38 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 29827 | 30333 |
| YP_009004439.1 | NC_023552_p68 | hypothetical protein | phrog_10505 | unknown function | unknown function | 1 | 43456 | 43638 |
| YP_009004382.1 | NC_023552_p11 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 7645 | 7914 |
| YP_009004428.1 | NC_023552_p57 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 37840 | 39126 |
| YP_009004416.1 | NC_023552_p45 | hypothetical protein | phrog_4702 | unknown function | unknown function | 1 | 31494 | 31643 |
| YP_009004420.1 | NC_023552_p49 | FtsK | phrog_6152 | unknown function | unknown function | 1 | 33944 | 35011 |
| YP_009004415.1 | NC_023552_p44 | hypothetical protein | phrog_11260 | unknown function | unknown function | 1 | 31408 | 31494 |
| YP_009004410.1 | NC_023552_p39 | hypothetical protein | phrog_4656 | unknown function | unknown function | 1 | 30333 | 30566 |
| YP_009004427.1 | NC_023552_p56 | hypothetical protein | phrog_5921 | unknown function | unknown function | 1 | 37695 | 37847 |
| YP_009004418.1 | NC_023552_p47 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32566 | 33558 |
| YP_009004413.1 | NC_023552_p42 | hypothetical protein | phrog_5559 | unknown function | unknown function | 1 | 31104 | 31283 |
| YP_009004432.1 | NC_023552_p61 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 40222 | 40356 |
| YP_009004442.1 | NC_023552_p71 | hypothetical protein | phrog_2202 | unknown function | unknown function | 1 | 44563 | 44889 |
| YP_009004396.1 | NC_023552_p25 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 22868 | 23038 |
| YP_009004384.1 | NC_023552_p13 | head-to-tail connector complex protein | phrog_813 | head-tail adaptor | connector | 1 | 8288 | 8725 |
| YP_009004372.1 | NC_023552_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 55 | 444 |
| YP_009004438.1 | NC_023552_p67 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 43202 | 43456 |
| YP_009004398.1 | NC_023552_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 24041 | 25207 |
| YP_009004449.1 | NC_023552_p78 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46571 | 46954 |
| YP_009004411.1 | NC_023552_p40 | hypothetical protein | phrog_4981 | unknown function | unknown function | 1 | 30563 | 30838 |
| YP_009004378.1 | NC_023552_p7 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 6243 | 6590 |
| YP_009004403.1 | NC_023552_p32 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 27486 | 27731 |
| YP_009004395.1 | NC_023552_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22506 | 22868 |
| YP_009004385.1 | NC_023552_p14 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 8819 | 9817 |
| YP_009004441.1 | NC_023552_p70 | hypothetical protein | phrog_7429 | unknown function | unknown function | 1 | 44287 | 44499 |
| YP_009004431.1 | NC_023552_p60 | hypothetical protein | phrog_3008 | DNA methyltransferase | other | 1 | 39971 | 40225 |
| YP_009004414.1 | NC_023552_p43 | hypothetical protein | phrog_5806 | unknown function | unknown function | 1 | 31280 | 31411 |
| YP_009004440.1 | NC_023552_p69 | hypothetical protein | phrog_5855 | unknown function | unknown function | 1 | 43711 | 44211 |
| YP_009004445.1 | NC_023552_p74 | hypothetical protein | phrog_4738 | transcriptional repressor | transcription regulation | 1 | 45256 | 45429 |
| YP_009004391.1 | NC_023552_p20 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 18133 | 19026 |
| YP_009004421.1 | NC_023552_p50 | RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35008 | 35508 |
| YP_009004419.1 | NC_023552_p48 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 33555 | 33947 |
| YP_009004407.1 | NC_023552_p36 | hypothetical protein | phrog_9041 | unknown function | unknown function | 1 | 29117 | 29365 |
| YP_009004383.1 | NC_023552_p12 | hypothetical protein | phrog_2325 | minor tail protein | tail | 1 | 7914 | 8291 |
| YP_009004387.1 | NC_023552_p16 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9933 | 10532 |
| YP_009004424.1 | NC_023552_p53 | DNA methylase | phrog_2060 | DNA methyltransferase | other | 1 | 36400 | 36801 |
| YP_009004397.1 | NC_023552_p26 | lysin A | phrog_6707 | endolysin | lysis | 1 | 23109 | 24044 |
| YP_009004430.1 | NC_023552_p59 | hypothetical protein | phrog_7789 | unknown function | unknown function | 1 | 39907 | 39996 |
| YP_009004405.1 | NC_023552_p34 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 27961 | 28824 |
| YP_009004376.1 | NC_023552_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4896 | 5261 |
| YP_009004446.1 | NC_023552_p75 | hypothetical protein | phrog_6617 | unknown function | unknown function | 1 | 45628 | 45966 |
| YP_009004401.2 | NC_023552_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 25908 | 26897 |
| YP_009004379.1 | NC_023552_p8 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6594 | 6956 |
| YP_009004404.1 | NC_023552_p33 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 27728 | 27964 |
| YP_009004406.1 | NC_023552_p35 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 28821 | 29120 |
| YP_009004448.1 | NC_023552_p77 | hypothetical protein | phrog_7285 | unknown function | unknown function | 1 | 46318 | 46566 |
| YP_009004434.1 | NC_023552_p63 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 41244 | 41774 |
| YP_009004444.1 | NC_023552_p73 | hypothetical protein | phrog_10254 | unknown function | unknown function | 1 | 45056 | 45247 |
| YP_009004394.1 | NC_023552_p23 | hypothetical protein | phrog_6374 | unknown function | unknown function | 1 | 22340 | 22489 |
| YP_009004388.1 | NC_023552_p17 | tape measure protein | phrog_2337 | tail length tape measure protein | tail | 1 | 10865 | 14632 |
| YP_009004386.1 | NC_023552_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9933 | 10851 |
| YP_009004447.1 | NC_023552_p76 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 45963 | 46331 |
| YP_009004380.1 | NC_023552_p9 | head-to-tail connector complex protein | phrog_6553 | head closure Hc1 | connector | 1 | 6956 | 7306 |
| YP_009004389.1 | NC_023552_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14629 | 16374 |
| YP_009004417.1 | NC_023552_p46 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31640 | 32569 |
| YP_009004443.1 | NC_023552_p72 | hypothetical protein | phrog_4550 | unknown function | unknown function | 1 | 44886 | 45059 |
| YP_009004390.1 | NC_023552_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16374 | 18110 |
| YP_009004400.1 | NC_023552_p29 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 25474 | 25833 |
| YP_009004412.1 | NC_023552_p41 | hypothetical protein | phrog_5803 | unknown function | unknown function | 1 | 30835 | 31107 |
| YP_009004426.1 | NC_023552_p55 | HTH DNA binding protein | phrog_7170 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37034 | 37702 |
| YP_009004422.1 | NC_023552_p51 | hypothetical protein | phrog_10863 | unknown function | unknown function | 1 | 35505 | 35714 |
| YP_009004435.1 | NC_023552_p64 | hypothetical protein | phrog_7254 | unknown function | unknown function | 1 | 41771 | 42037 |
| YP_009004437.1 | NC_023552_p66 | hypothetical protein | phrog_16825 | unknown function | unknown function | 1 | 42933 | 43205 |
| YP_009004429.1 | NC_023552_p58 | hypothetical protein | phrog_25269 | unknown function | unknown function | 1 | 39119 | 39907 |
| YP_009004381.1 | NC_023552_p10 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 7322 | 7645 |