| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023553 |
Definition |
Mycobacterium phage Echild, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53159 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
63.69 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009004493.1 | NC_023553_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28991 | 30778 |
| YP_009004451.1 | NC_023553_p2 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 662 | 1495 |
| YP_009004460.1 | NC_023553_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6541 | 7518 |
| YP_009004498.1 | NC_023553_p49 | ThyX-like protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31795 | 32520 |
| YP_009004488.1 | NC_023553_p39 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27555 | 27938 |
| YP_009004505.1 | NC_023553_p56 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36365 | 37135 |
| YP_009004492.1 | NC_023553_p43 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 28742 | 28960 |
| YP_009004458.1 | NC_023553_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4797 | 6086 |
| YP_009004497.1 | NC_023553_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 31584 | 31793 |
| YP_009004514.1 | NC_023553_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40203 | 40463 |
| YP_009004462.1 | NC_023553_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9325 | 10788 |
| YP_009004539.1 | NC_023553_p90 | hypothetical protein | phrog_9713 | unknown function | unknown function | -1 | 48815 | 48883 |
| YP_009004527.1 | NC_023553_p78 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 45640 | 45798 |
| YP_009004513.1 | NC_023553_p64 | hydrolase | phrog_789 | esterase/lipase | other | -1 | 39364 | 40203 |
| YP_009004540.1 | NC_023553_p91 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 48880 | 49146 |
| YP_009004537.1 | NC_023553_p88 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48371 | 48508 |
| YP_009004499.1 | NC_023553_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32600 | 33130 |
| YP_009004545.1 | NC_023553_p96 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 50185 | 50475 |
| YP_009004521.1 | NC_023553_p72 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 42760 | 42954 |
| YP_009004467.1 | NC_023553_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13473 | 13850 |
| YP_009004483.1 | NC_023553_p34 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 26075 | 26632 |
| YP_009004509.1 | NC_023553_p60 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38184 | 38573 |
| YP_009004455.1 | NC_023553_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 3007 | 3477 |
| YP_009004471.1 | NC_023553_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14751 | 15176 |
| YP_009004520.1 | NC_023553_p71 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42492 | 42731 |
| YP_009004456.1 | NC_023553_p7 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 3559 | 4524 |
| YP_009004544.1 | NC_023553_p95 | hypothetical protein | phrog_1556 | unknown function | unknown function | -1 | 49892 | 50188 |
| YP_009004519.1 | NC_023553_p70 | hypothetical protein | phrog_1540 | unknown function | unknown function | -1 | 42118 | 42495 |
| YP_009004476.1 | NC_023553_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19279 | 20295 |
| YP_009004549.1 | NC_023553_p100 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51660 | 51953 |
| YP_009004480.1 | NC_023553_p31 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 22854 | 25181 |
| YP_009004468.1 | NC_023553_p19 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 13847 | 14041 |
| YP_009004464.1 | NC_023553_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11720 | 12232 |
| YP_009004472.1 | NC_023553_p23 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15194 | 15787 |
| YP_009004470.1 | NC_023553_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14406 | 14741 |
| YP_009004535.1 | NC_023553_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47557 | 47619 |
| YP_009004461.1 | NC_023553_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7541 | 9328 |
| YP_009004517.1 | NC_023553_p68 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41174 | 41980 |
| YP_009004475.1 | NC_023553_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16721 | 19258 |
| YP_009004536.1 | NC_023553_p87 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47616 | 48371 |
| YP_009004454.1 | NC_023553_p5 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2672 | 2968 |
| YP_009004542.1 | NC_023553_p93 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49525 | 49692 |
| YP_009004465.1 | NC_023553_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12262 | 13218 |
| YP_009004507.1 | NC_023553_p58 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37452 | 37724 |
| YP_009004450.1 | NC_023553_p1 | hypothetical protein | phrog_7736 | unknown function | unknown function | 1 | 330 | 443 |
| YP_009004459.1 | NC_023553_p10 | holin | phrog_526 | holin | lysis | 1 | 6083 | 6544 |
| YP_009004478.1 | NC_023553_p29 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22081 | 22527 |
| YP_009004500.1 | NC_023553_p51 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33127 | 35166 |
| YP_009004466.1 | NC_023553_p17 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13288 | 13470 |
| YP_009004457.1 | NC_023553_p8 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 4639 | 4797 |
| YP_009004515.1 | NC_023553_p66 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40460 | 40693 |
| YP_009004495.1 | NC_023553_p46 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 30977 | 31165 |
| YP_009004522.1 | NC_023553_p73 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42951 | 43175 |
| YP_009004485.1 | NC_023553_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26911 | 27204 |
| YP_009004490.1 | NC_023553_p41 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 28231 | 28515 |
| YP_009004543.1 | NC_023553_p94 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49689 | 49889 |
| YP_009004525.1 | NC_023553_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44502 | 45077 |
| YP_009004532.1 | NC_023553_p83 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 46894 | 47127 |
| YP_009004546.1 | NC_023553_p97 | hypothetical protein | phrog_1617 | unknown function | unknown function | -1 | 50496 | 51377 |
| YP_009004506.1 | NC_023553_p57 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37132 | 37455 |
| YP_009004512.1 | NC_023553_p63 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39251 | 39367 |
| YP_009004486.1 | NC_023553_p37 | hypothetical protein | phrog_9463 | unknown function | unknown function | -1 | 27314 | 27499 |
| YP_009004526.1 | NC_023553_p77 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45329 | 45496 |
| YP_009004523.1 | NC_023553_p74 | RecB-like recombinase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43221 | 44033 |
| YP_009004484.1 | NC_023553_p35 | ParB | phrog_38291 | unknown function | unknown function | 1 | 26632 | 26898 |
| YP_009004469.1 | NC_023553_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14038 | 14406 |
| YP_009004510.1 | NC_023553_p61 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 38655 | 38786 |
| YP_009004479.1 | NC_023553_p30 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22524 | 22853 |
| YP_009004528.1 | NC_023553_p79 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 45798 | 46073 |
| YP_009004538.1 | NC_023553_p89 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 48519 | 48818 |
| YP_009004547.1 | NC_023553_p98 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 51374 | 51550 |
| YP_009004453.1 | NC_023553_p4 | hypothetical protein | phrog_3585 | immunity protein | other | 1 | 2337 | 2675 |
| YP_009004474.1 | NC_023553_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15899 | 16306 |
| YP_009004481.1 | NC_023553_p32 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 25256 | 25444 |
| YP_009004548.1 | NC_023553_p99 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51547 | 51630 |
| YP_009004503.1 | NC_023553_p54 | transcription factor | phrog_354 | sigma-K factor | transcription regulation | -1 | 35529 | 36212 |
| YP_009004501.1 | NC_023553_p52 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35166 | 35369 |
| YP_009004518.1 | NC_023553_p69 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 41990 | 42121 |
| YP_009004524.1 | NC_023553_p75 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44030 | 44443 |
| YP_009004491.1 | NC_023553_p42 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 28515 | 28742 |
| YP_009004533.1 | NC_023553_p84 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47127 | 47255 |
| YP_009004489.1 | NC_023553_p40 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 27935 | 28234 |
| YP_009004508.1 | NC_023553_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37724 | 38356 |
| YP_009004482.1 | NC_023553_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25457 | 25939 |
| YP_009004477.1 | NC_023553_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20292 | 22064 |
| YP_009004463.1 | NC_023553_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10785 | 11669 |
| YP_009004502.1 | NC_023553_p53 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35366 | 35545 |
| YP_009004494.1 | NC_023553_p45 | hypothetical protein | phrog_4326 | unknown function | unknown function | -1 | 30786 | 30980 |
| YP_009004531.1 | NC_023553_p82 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 46664 | 46897 |
| YP_009004516.1 | NC_023553_p67 | hypothetical protein | phrog_5101 | unknown function | unknown function | -1 | 40847 | 41146 |
| YP_009004541.1 | NC_023553_p92 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49175 | 49528 |
| YP_009004452.1 | NC_023553_p3 | hypothetical protein | phrog_5234 | unknown function | unknown function | 1 | 1543 | 2358 |
| YP_009004504.1 | NC_023553_p55 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 36209 | 36361 |
| YP_009004530.1 | NC_023553_p81 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46254 | 46667 |
| YP_009004511.1 | NC_023553_p62 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38812 | 39285 |
| YP_009004529.1 | NC_023553_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46075 | 46257 |
| YP_009004487.1 | NC_023553_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27496 | 27558 |
| YP_009004534.1 | NC_023553_p85 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47255 | 47560 |
| YP_009004496.1 | NC_023553_p47 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31165 | 31587 |
| YP_009004473.1 | NC_023553_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15899 | 16731 |