| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023556 |
Definition |
Achromobacter phage JWAlpha, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Jwalphavirus. |
DB of origin |
REFSEQ |
Length |
72329 |
Host Name |
Achromobacter xylosoxidans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
54.41 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009004758.1 | NC_023556_p57 | hypothetical protein | phrog_5974 | unknown function | unknown function | 1 | 31406 | 31828 |
| YP_009004735.1 | NC_023556_p34 | hypothetical protein | phrog_19202 | unknown function | unknown function | 1 | 15149 | 15340 |
| YP_009004730.1 | NC_023556_p29 | hypothetical protein | phrog_22234 | unknown function | unknown function | 1 | 13031 | 13294 |
| YP_009004749.1 | NC_023556_p48 | hypothetical protein | phrog_26767 | unknown function | unknown function | 1 | 20439 | 20909 |
| YP_009004708.1 | NC_023556_p7 | hypothetical protein | phrog_24239 | unknown function | unknown function | 1 | 2153 | 2422 |
| YP_009004704.1 | NC_023556_p3 | hypothetical protein | phrog_36040 | unknown function | unknown function | 1 | 1181 | 1348 |
| YP_009004731.1 | NC_023556_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13276 | 13707 |
| YP_009004740.1 | NC_023556_p39 | hypothetical protein | phrog_19749 | unknown function | unknown function | 1 | 17495 | 17734 |
| YP_009004775.1 | NC_023556_p74 | hypothetical protein | phrog_1357 | major head protein | head and packaging | -1 | 56767 | 57990 |
| YP_009004736.1 | NC_023556_p35 | hypothetical protein | phrog_13631 | unknown function | unknown function | 1 | 15354 | 15722 |
| YP_009004789.1 | NC_023556_p88 | hypothetical protein | phrog_30381 | unknown function | unknown function | 1 | 70505 | 70828 |
| YP_009004742.1 | NC_023556_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17972 | 18061 |
| YP_009004783.1 | NC_023556_p82 | hypothetical protein | phrog_36697 | unknown function | unknown function | -1 | 63836 | 66289 |
| YP_009004723.1 | NC_023556_p22 | hypothetical protein | phrog_24167 | unknown function | unknown function | 1 | 9129 | 9899 |
| YP_009004713.1 | NC_023556_p12 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 3373 | 3762 |
| YP_009004760.1 | NC_023556_p59 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 32356 | 33348 |
| YP_009004715.1 | NC_023556_p14 | hypothetical protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4005 | 4835 |
| YP_009004761.1 | NC_023556_p60 | DNA primase | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 33345 | 35489 |
| YP_009004782.1 | NC_023556_p81 | hypothetical protein | phrog_5211 | unknown function | unknown function | -1 | 63374 | 63712 |
| YP_009004772.1 | NC_023556_p71 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 52344 | 55016 |
| YP_009004754.1 | NC_023556_p53 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 26387 | 26845 |
| YP_009004773.1 | NC_023556_p72 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 55020 | 55919 |
| YP_009004734.1 | NC_023556_p33 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 14108 | 15145 |
| YP_009004770.1 | NC_023556_p69 | hypothetical protein | phrog_6126 | virion structural protein | head and packaging | -1 | 49747 | 51798 |
| YP_009004779.1 | NC_023556_p78 | hypothetical protein | phrog_6197 | Rz-like spanin | lysis | -1 | 62038 | 62553 |
| YP_009004728.1 | NC_023556_p27 | hypothetical protein | phrog_17762 | unknown function | unknown function | 1 | 12376 | 12723 |
| YP_009004790.1 | NC_023556_p89 | hypothetical protein | phrog_23882 | unknown function | unknown function | 1 | 70825 | 71142 |
| YP_009004786.1 | NC_023556_p85 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 68609 | 69289 |
| YP_009004718.1 | NC_023556_p17 | hypothetical protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6080 | 6889 |
| YP_009004741.1 | NC_023556_p40 | hypothetical protein | phrog_27287 | unknown function | unknown function | 1 | 17797 | 17955 |
| YP_009004702.1 | NC_023556_p1 | hypothetical protein | phrog_5020 | unknown function | unknown function | 1 | 116 | 436 |
| YP_009004746.1 | NC_023556_p45 | hypothetical protein | phrog_25795 | unknown function | unknown function | 1 | 19458 | 20036 |
| YP_009004722.1 | NC_023556_p21 | hypothetical protein | phrog_31180 | unknown function | unknown function | 1 | 8901 | 9113 |
| YP_009004712.1 | NC_023556_p11 | hypothetical protein | phrog_36682 | unknown function | unknown function | 1 | 3263 | 3376 |
| YP_009004748.1 | NC_023556_p47 | hypothetical protein | phrog_38162 | unknown function | unknown function | 1 | 20224 | 20439 |
| YP_009004781.1 | NC_023556_p80 | hypothetical protein | phrog_1356 | holin | lysis | -1 | 63126 | 63395 |
| YP_009004751.1 | NC_023556_p50 | hypothetical protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 21881 | 24418 |
| YP_009004710.1 | NC_023556_p9 | hypothetical protein | phrog_5005 | unknown function | unknown function | 1 | 2740 | 2952 |
| YP_009004727.1 | NC_023556_p26 | hypothetical protein | phrog_17232 | unknown function | unknown function | 1 | 12014 | 12373 |
| YP_009004785.1 | NC_023556_p84 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 67006 | 68616 |
| YP_009004787.1 | NC_023556_p86 | hypothetical protein | phrog_3934 | unknown function | unknown function | -1 | 69332 | 69799 |
| YP_009004720.1 | NC_023556_p19 | hypothetical protein | phrog_34947 | unknown function | unknown function | 1 | 7316 | 7804 |
| YP_009004726.1 | NC_023556_p25 | hypothetical protein | phrog_20531 | unknown function | unknown function | 1 | 11035 | 11949 |
| YP_009004719.1 | NC_023556_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6964 | 7260 |
| YP_009004788.1 | NC_023556_p87 | hypothetical protein | phrog_7213 | unknown function | unknown function | 1 | 69940 | 70251 |
| YP_009004792.1 | NC_023556_p91 | hypothetical protein | phrog_29119 | unknown function | unknown function | 1 | 71521 | 71838 |
| YP_009004711.1 | NC_023556_p10 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 2956 | 3273 |
| YP_009004732.1 | NC_023556_p31 | hypothetical protein | phrog_34899 | unknown function | unknown function | 1 | 13704 | 13889 |
| YP_009004769.1 | NC_023556_p68 | virion RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 39371 | 49648 |
| YP_009004791.1 | NC_023556_p90 | hypothetical protein | phrog_31930 | unknown function | unknown function | 1 | 71111 | 71524 |
| YP_009004706.1 | NC_023556_p5 | hypothetical protein | phrog_28690 | unknown function | unknown function | 1 | 1527 | 1787 |
| YP_009004755.1 | NC_023556_p54 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 26901 | 28205 |
| YP_009004762.1 | NC_023556_p61 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 35537 | 36310 |
| YP_009004716.1 | NC_023556_p15 | hypothetical protein | phrog_20599 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4870 | 5283 |
| YP_009004763.1 | NC_023556_p62 | single-stranded DNA-binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36342 | 37103 |
| YP_009004744.1 | NC_023556_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18547 | 18888 |
| YP_009004709.1 | NC_023556_p8 | hypothetical protein | phrog_2510 | unknown function | unknown function | 1 | 2409 | 2738 |
| YP_009004703.1 | NC_023556_p2 | hypothetical protein | phrog_4099 | unknown function | unknown function | 1 | 613 | 1038 |
| YP_009004729.1 | NC_023556_p28 | hypothetical protein | phrog_24427 | unknown function | unknown function | 1 | 12729 | 13034 |
| YP_009004738.1 | NC_023556_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16852 | 16998 |
| YP_009004725.1 | NC_023556_p24 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 10242 | 10940 |
| YP_009004777.1 | NC_023556_p76 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 59360 | 59731 |
| YP_009004767.1 | NC_023556_p66 | hypothetical protein | phrog_18842 | unknown function | unknown function | 1 | 38711 | 39136 |
| YP_009004737.1 | NC_023556_p36 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15695 | 16855 |
| YP_009004768.1 | NC_023556_p67 | hypothetical protein | phrog_19025 | unknown function | unknown function | 1 | 39153 | 39335 |
| YP_009004757.1 | NC_023556_p56 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 28749 | 31409 |
| YP_009004756.1 | NC_023556_p55 | hypothetical protein | phrog_4881 | unknown function | unknown function | 1 | 28216 | 28740 |
| YP_009004724.1 | NC_023556_p23 | hypothetical protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9901 | 10245 |
| YP_009004714.1 | NC_023556_p13 | hypothetical protein | phrog_35866 | unknown function | unknown function | 1 | 3762 | 3989 |
| YP_009004721.1 | NC_023556_p20 | hypothetical protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 7829 | 8821 |
| YP_009004733.1 | NC_023556_p32 | hypothetical protein | phrog_21163 | unknown function | unknown function | 1 | 13889 | 14092 |
| YP_009004705.1 | NC_023556_p4 | hypothetical protein | phrog_37143 | unknown function | unknown function | 1 | 1375 | 1527 |
| YP_009004707.1 | NC_023556_p6 | hypothetical protein | phrog_24111 | unknown function | unknown function | 1 | 1809 | 2153 |
| YP_009004774.1 | NC_023556_p73 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 55998 | 56696 |
| YP_009004745.1 | NC_023556_p44 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 19124 | 19447 |
| YP_009004753.1 | NC_023556_p52 | hypothetical protein | phrog_6377 | unknown function | unknown function | 1 | 26068 | 26595 |
| YP_009004778.1 | NC_023556_p77 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 59742 | 62030 |
| YP_009004743.1 | NC_023556_p42 | hypothetical protein | phrog_30184 | unknown function | unknown function | 1 | 18163 | 18345 |
| YP_009004780.1 | NC_023556_p79 | N-acetylmuramidase | phrog_315 | endolysin | lysis | -1 | 62531 | 63163 |
| YP_009004766.1 | NC_023556_p65 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38202 | 38693 |
| YP_009004771.1 | NC_023556_p70 | hypothetical protein | phrog_16623 | unknown function | unknown function | -1 | 51810 | 52334 |
| YP_009004717.1 | NC_023556_p16 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 5382 | 5942 |
| YP_009004747.1 | NC_023556_p46 | hypothetical protein | phrog_23639 | unknown function | unknown function | 1 | 20036 | 20224 |
| YP_009004750.1 | NC_023556_p49 | thymidilate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 20906 | 21817 |
| YP_009004759.1 | NC_023556_p58 | hypothetical protein | phrog_9919 | unknown function | unknown function | 1 | 31831 | 32307 |
| YP_009004776.1 | NC_023556_p75 | tape measure protein | phrog_2120 | tail length tape measure protein | tail | -1 | 58003 | 59334 |
| YP_009004765.1 | NC_023556_p64 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37631 | 38191 |
| YP_009004764.1 | NC_023556_p63 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37107 | 37634 |
| YP_009004784.1 | NC_023556_p83 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 66293 | 66997 |
| YP_009004739.1 | NC_023556_p38 | dCTP deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | 1 | 17001 | 17495 |
| YP_009004752.1 | NC_023556_p51 | hypothetical protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 24428 | 26032 |