| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023558 |
Definition |
Cronobacter phage Dev2 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Cronobacter virus Dev2. |
DB of origin |
REFSEQ |
Length |
38966 |
Host Name |
Cronobacter turicensis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
52.55 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009005124.1 | NC_023558_p14 | T7-like phage ssDNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8568 | 9266 |
| YP_009005118.1 | NC_023558_p8 | hypothetical protein | phrog_4383 | unknown function | unknown function | 1 | 6018 | 6197 |
| YP_009005137.1 | NC_023558_p27 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17392 | 17616 |
| YP_009005136.1 | NC_023558_p26 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17110 | 17382 |
| YP_009005151.1 | NC_023558_p41 | Phage holin, class II | phrog_920 | holin | lysis | 1 | 35338 | 35532 |
| YP_009005147.1 | NC_023558_p37 | Phage protein inside capsid B | phrog_805 | internal virion protein | head and packaging | 1 | 25942 | 26529 |
| YP_009005111.1 | NC_023558_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 759 | 1076 |
| YP_009005134.1 | NC_023558_p24 | Phage HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 15830 | 16039 |
| YP_009005123.1 | NC_023558_p13 | Host RNA polymerase inhibitor, T7-like gp2 | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8356 | 8520 |
| YP_009005112.1 | NC_023558_p2 | Phage protein kinase | phrog_15752 | protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE | other | 1 | 1079 | 1813 |
| YP_009005153.1 | NC_023558_p43 | Phage endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 35897 | 36346 |
| YP_009005113.1 | NC_023558_p3 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 1968 | 2162 |
| YP_009005141.1 | NC_023558_p31 | Phage capsid and scaffold | phrog_1052 | head assembly | head and packaging | 1 | 19957 | 20838 |
| YP_009005140.1 | NC_023558_p30 | Phage collar / T7-like phage head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18284 | 19852 |
| YP_009005131.1 | NC_023558_p21 | T7-like phage DNA Polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13038 | 15209 |
| YP_009005129.1 | NC_023558_p19 | T7-like phage primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 10686 | 12389 |
| YP_009005139.1 | NC_023558_p29 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18018 | 18269 |
| YP_009005142.1 | NC_023558_p32 | Phage capsid and scaffold | phrog_267 | major head protein | head and packaging | 1 | 20970 | 22019 |
| YP_009005144.1 | NC_023558_p34 | Phage tail fiber protein / T7-like tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22340 | 22906 |
| YP_009005114.1 | NC_023558_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2162 | 2374 |
| YP_009005133.1 | NC_023558_p23 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15549 | 15833 |
| YP_009005155.1 | NC_023558_p45 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38397 | 38555 |
| YP_009005120.1 | NC_023558_p10 | DNA ligase, phage-associated | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6464 | 7558 |
| YP_009005146.1 | NC_023558_p36 | Phage protein inside capsid A | phrog_308 | internal virion protein | head and packaging | 1 | 25363 | 25821 |
| YP_009005130.1 | NC_023558_p20 | hypothetical protein | phrog_18700 | unknown function | unknown function | 1 | 12434 | 12967 |
| YP_009005115.1 | NC_023558_p5 | T7-like phage DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2477 | 5158 |
| YP_009005135.1 | NC_023558_p25 | T7-like phage exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16036 | 16902 |
| YP_009005132.1 | NC_023558_p22 | hypothetical protein | phrog_18049 | unknown function | unknown function | 1 | 15310 | 15537 |
| YP_009005148.1 | NC_023558_p38 | Phage protein inside capsid C | phrog_1339 | internal virion protein | head and packaging | 1 | 26541 | 28823 |
| YP_009005126.1 | NC_023558_p16 | hypothetical protein | phrog_15211 | unknown function | unknown function | 1 | 9718 | 9942 |
| YP_009005127.1 | NC_023558_p17 | Phage lysin, N-acetylmuramoyl-L-alanine amidase #T7-like gp3.5 | phrog_822 | amidase | lysis | 1 | 9932 | 10390 |
| YP_009005145.1 | NC_023558_p35 | Phage tail fiber protein / T7-like tail tubular protein B | phrog_457 | tail protein | tail | 1 | 22918 | 25287 |
| YP_009005143.1 | NC_023558_p33 | hypothetical protein | phrog_7473 | unknown function | unknown function | 1 | 22088 | 22282 |
| YP_009005119.1 | NC_023558_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6211 | 6384 |
| YP_009005150.1 | NC_023558_p40 | Phage tail fibers | phrog_8460 | tail fiber protein | tail | 1 | 32793 | 35291 |
| YP_009005117.1 | NC_023558_p7 | hypothetical protein | phrog_8103 | unknown function | unknown function | 1 | 5450 | 5929 |
| YP_009005154.1 | NC_023558_p44 | Phage DNA packaging | phrog_38 | terminase large subunit | head and packaging | 1 | 36343 | 38106 |
| YP_009005138.1 | NC_023558_p28 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17657 | 18025 |
| YP_009005122.1 | NC_023558_p12 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 7927 | 8277 |
| YP_009005149.1 | NC_023558_p39 | Phage protein inside capsid D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 28829 | 32725 |
| YP_009005121.1 | NC_023558_p11 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 7674 | 7934 |
| YP_009005128.1 | NC_023558_p18 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 10405 | 10617 |
| YP_009005116.1 | NC_023558_p6 | hypothetical protein | phrog_8082 | unknown function | unknown function | 1 | 5171 | 5371 |
| YP_009005125.1 | NC_023558_p15 | T7-like phage endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9302 | 9721 |
| YP_009005152.1 | NC_023558_p42 | DNA packaging protein A, T7-like gp18 | phrog_1351 | terminase small subunit | head and packaging | 1 | 35529 | 35792 |