Genomic map of Cronobacter phage Dev2 (NC_023558)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023558
Definition
Cronobacter phage Dev2 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Cronobacter virus Dev2.
DB of origin
REFSEQ
Length
38966
Host Name
Cronobacter turicensis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
45
%GC
52.55
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009005124.1 NC_023558_p14 T7-like phage ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8568 9266
YP_009005118.1 NC_023558_p8 hypothetical protein phrog_4383 unknown function unknown function 1 6018 6197
YP_009005137.1 NC_023558_p27 hypothetical protein phrog_1391 unknown function unknown function 1 17392 17616
YP_009005136.1 NC_023558_p26 hypothetical protein phrog_1447 unknown function unknown function 1 17110 17382
YP_009005151.1 NC_023558_p41 Phage holin, class II phrog_920 holin lysis 1 35338 35532
YP_009005147.1 NC_023558_p37 Phage protein inside capsid B phrog_805 internal virion protein head and packaging 1 25942 26529
YP_009005111.1 NC_023558_p1 hypothetical protein singleton unknown function unknown function 1 759 1076
YP_009005134.1 NC_023558_p24 Phage HNS binding protein phrog_1334 unknown function unknown function 1 15830 16039
YP_009005123.1 NC_023558_p13 Host RNA polymerase inhibitor, T7-like gp2 phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 8356 8520
YP_009005112.1 NC_023558_p2 Phage protein kinase phrog_15752 protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE other 1 1079 1813
YP_009005153.1 NC_023558_p43 Phage endopeptidase Rz phrog_1327 Rz-like spanin lysis 1 35897 36346
YP_009005113.1 NC_023558_p3 hypothetical protein phrog_2385 unknown function unknown function 1 1968 2162
YP_009005141.1 NC_023558_p31 Phage capsid and scaffold phrog_1052 head assembly head and packaging 1 19957 20838
YP_009005140.1 NC_023558_p30 Phage collar / T7-like phage head-to-tail joining protein phrog_449 head-tail adaptor connector 1 18284 19852
YP_009005131.1 NC_023558_p21 T7-like phage DNA Polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13038 15209
YP_009005129.1 NC_023558_p19 T7-like phage primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 10686 12389
YP_009005139.1 NC_023558_p29 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18018 18269
YP_009005142.1 NC_023558_p32 Phage capsid and scaffold phrog_267 major head protein head and packaging 1 20970 22019
YP_009005144.1 NC_023558_p34 Phage tail fiber protein / T7-like tail tubular protein A phrog_446 tail protein tail 1 22340 22906
YP_009005114.1 NC_023558_p4 hypothetical protein singleton unknown function unknown function 1 2162 2374
YP_009005133.1 NC_023558_p23 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 15549 15833
YP_009005155.1 NC_023558_p45 hypothetical protein phrog_2193 unknown function unknown function 1 38397 38555
YP_009005120.1 NC_023558_p10 DNA ligase, phage-associated phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6464 7558
YP_009005146.1 NC_023558_p36 Phage protein inside capsid A phrog_308 internal virion protein head and packaging 1 25363 25821
YP_009005130.1 NC_023558_p20 hypothetical protein phrog_18700 unknown function unknown function 1 12434 12967
YP_009005115.1 NC_023558_p5 T7-like phage DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 2477 5158
YP_009005135.1 NC_023558_p25 T7-like phage exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16036 16902
YP_009005132.1 NC_023558_p22 hypothetical protein phrog_18049 unknown function unknown function 1 15310 15537
YP_009005148.1 NC_023558_p38 Phage protein inside capsid C phrog_1339 internal virion protein head and packaging 1 26541 28823
YP_009005126.1 NC_023558_p16 hypothetical protein phrog_15211 unknown function unknown function 1 9718 9942
YP_009005127.1 NC_023558_p17 Phage lysin, N-acetylmuramoyl-L-alanine amidase #T7-like gp3.5 phrog_822 amidase lysis 1 9932 10390
YP_009005145.1 NC_023558_p35 Phage tail fiber protein / T7-like tail tubular protein B phrog_457 tail protein tail 1 22918 25287
YP_009005143.1 NC_023558_p33 hypothetical protein phrog_7473 unknown function unknown function 1 22088 22282
YP_009005119.1 NC_023558_p9 hypothetical protein singleton unknown function unknown function -1 6211 6384
YP_009005150.1 NC_023558_p40 Phage tail fibers phrog_8460 tail fiber protein tail 1 32793 35291
YP_009005117.1 NC_023558_p7 hypothetical protein phrog_8103 unknown function unknown function 1 5450 5929
YP_009005154.1 NC_023558_p44 Phage DNA packaging phrog_38 terminase large subunit head and packaging 1 36343 38106
YP_009005138.1 NC_023558_p28 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17657 18025
YP_009005122.1 NC_023558_p12 hypothetical protein phrog_2585 nucleotide kinase other 1 7927 8277
YP_009005149.1 NC_023558_p39 Phage protein inside capsid D phrog_342 internal virion protein with endolysin domain head and packaging 1 28829 32725
YP_009005121.1 NC_023558_p11 hypothetical protein phrog_1777 unknown function unknown function 1 7674 7934
YP_009005128.1 NC_023558_p18 hypothetical protein phrog_1950 unknown function unknown function 1 10405 10617
YP_009005116.1 NC_023558_p6 hypothetical protein phrog_8082 unknown function unknown function 1 5171 5371
YP_009005125.1 NC_023558_p15 T7-like phage endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 9302 9721
YP_009005152.1 NC_023558_p42 DNA packaging protein A, T7-like gp18 phrog_1351 terminase small subunit head and packaging 1 35529 35792