| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023560 |
Definition |
Oenococcus phage phiS13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
43454 |
Host Name |
Oenococcus oeni |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
38.96 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009005252.1 | NC_023560_p42 | hypothetical protein | phrog_13237 | unknown function | unknown function | 1 | 32765 | 33184 |
| YP_009005253.1 | NC_023560_p43 | hypothetical protein | phrog_23900 | unknown function | unknown function | 1 | 33184 | 33558 |
| YP_009005235.1 | NC_023560_p25 | Phage portal | phrog_64 | portal protein | head and packaging | 1 | 14385 | 15857 |
| YP_009005215.1 | NC_023560_p5 | hypothetical protein | phrog_13553 | unknown function | unknown function | 1 | 2532 | 2720 |
| YP_009005258.1 | NC_023560_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36251 | 37009 |
| YP_009005223.1 | NC_023560_p13 | hypothetical protein | phrog_11894 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 6707 | 7075 |
| YP_009005244.1 | NC_023560_p34 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 20799 | 21152 |
| YP_009005229.1 | NC_023560_p19 | hypothetical protein | phrog_22525 | unknown function | unknown function | 1 | 10871 | 11149 |
| YP_009005246.1 | NC_023560_p36 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 21681 | 22082 |
| YP_009005214.1 | NC_023560_p4 | hypothetical protein | phrog_17849 | unknown function | unknown function | 1 | 2245 | 2490 |
| YP_009005216.1 | NC_023560_p6 | hypothetical protein | phrog_19177 | unknown function | unknown function | 1 | 2860 | 3021 |
| YP_009005224.1 | NC_023560_p14 | prophage protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 7087 | 7575 |
| YP_009005230.1 | NC_023560_p20 | hypothetical protein | phrog_20346 | unknown function | unknown function | 1 | 11222 | 11452 |
| YP_009005226.1 | NC_023560_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8868 | 9167 |
| YP_009005233.1 | NC_023560_p23 | Phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 12319 | 13080 |
| YP_009005238.1 | NC_023560_p28 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 17455 | 18114 |
| YP_009005227.1 | NC_023560_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9286 | 9462 |
| YP_009005222.1 | NC_023560_p12 | hypothetical protein | phrog_15154 | unknown function | unknown function | 1 | 6552 | 6710 |
| YP_009005254.1 | NC_023560_p44 | lysin | phrog_291 | endolysin | lysis | 1 | 33641 | 34933 |
| YP_009005240.1 | NC_023560_p30 | phage major head protein | phrog_29 | major head protein | head and packaging | 1 | 18520 | 19560 |
| YP_009005250.1 | NC_023560_p40 | prophage protein | phrog_22212 | unknown function | unknown function | 1 | 27491 | 32458 |
| YP_009005245.1 | NC_023560_p35 | major tail protein | phrog_158 | major tail protein | tail | 1 | 21155 | 21619 |
| YP_009005251.1 | NC_023560_p41 | hypothetical protein | phrog_17369 | unknown function | unknown function | 1 | 32479 | 32787 |
| YP_009005255.1 | NC_023560_p45 | Hol44 | phrog_19617 | holin | lysis | 1 | 34944 | 35309 |
| YP_009005257.1 | NC_023560_p47 | hypothetical protein | phrog_20939 | unknown function | unknown function | 1 | 35939 | 36181 |
| YP_009005212.1 | NC_023560_p2 | hypothetical protein | phrog_13670 | unknown function | unknown function | -1 | 1392 | 1679 |
| YP_009005232.1 | NC_023560_p22 | prophage protein | phrog_21290 | unknown function | unknown function | 1 | 11811 | 12281 |
| YP_009005261.1 | NC_023560_p51 | hypothetical protein | phrog_26225 | unknown function | unknown function | 1 | 39615 | 40952 |
| YP_009005218.1 | NC_023560_p8 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 3413 | 4339 |
| YP_009005234.1 | NC_023560_p24 | Phage large terminase small subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 13070 | 14365 |
| YP_009005263.1 | NC_023560_p53 | hypothetical protein | phrog_6148 | beta-lactamase-inhibitor protein BLIP | moron, auxiliary metabolic gene and host takeover | 1 | 42228 | 42659 |
| YP_009005259.1 | NC_023560_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37037 | 37330 |
| YP_009005242.1 | NC_023560_p32 | hypothetical protein | phrog_2168 | unknown function | unknown function | 1 | 19881 | 20240 |
| YP_009005249.1 | NC_023560_p39 | hypothetical protein | phrog_1194 | unknown function | unknown function | 1 | 27104 | 27469 |
| YP_009005256.1 | NC_023560_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35444 | 35875 |
| YP_009005236.1 | NC_023560_p26 | hypothetical protein | phrog_4478 | peptidase | other | 1 | 15817 | 16110 |
| YP_009005239.1 | NC_023560_p29 | prophage protein | phrog_909 | major head protein | head and packaging | 1 | 18132 | 18488 |
| YP_009005213.1 | NC_023560_p3 | Phage transcription regulator, Cro/C1 family | phrog_8 | transcriptional regulator | transcription regulation | -1 | 1684 | 1995 |
| YP_009005211.1 | NC_023560_p1 | Phage integrase | phrog_1 | integrase | integration and excision | -1 | 231 | 1274 |
| YP_009005241.1 | NC_023560_p31 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 19579 | 19884 |
| YP_009005231.1 | NC_023560_p21 | hypothetical protein | phrog_2277 | unknown function | unknown function | -1 | 11449 | 11655 |
| YP_009005248.1 | NC_023560_p38 | Phage tail length tape-measure protein | phrog_1535 | tail length tape measure protein | tail | 1 | 22471 | 27087 |
| YP_009005217.1 | NC_023560_p7 | hypothetical protein | phrog_23368 | unknown function | unknown function | 1 | 2999 | 3394 |
| YP_009005262.1 | NC_023560_p52 | Bactoprenol glucosyl transferase | phrog_841 | GtrB-like O-antigen conversion | moron, auxiliary metabolic gene and host takeover | 1 | 40971 | 41921 |
| YP_009005264.1 | NC_023560_p54 | hypothetical protein | phrog_26308 | unknown function | unknown function | 1 | 42677 | 42952 |
| YP_009005260.1 | NC_023560_p50 | hypothetical protein | phrog_585 | unknown function | unknown function | -1 | 39002 | 39412 |
| YP_009005237.1 | NC_023560_p27 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 16113 | 17291 |
| YP_009005228.1 | NC_023560_p18 | prophage protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 9559 | 10764 |
| YP_009005219.1 | NC_023560_p9 | phage nucleotide-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4336 | 5052 |
| YP_009005243.1 | NC_023560_p33 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20233 | 20784 |
| YP_009005225.1 | NC_023560_p15 | hypothetical protein | phrog_36082 | unknown function | unknown function | 1 | 7733 | 8521 |
| YP_009005220.1 | NC_023560_p10 | prophage Lp2 protein 18 | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5042 | 5614 |
| YP_009005247.1 | NC_023560_p37 | hypothetical protein | phrog_2066 | unknown function | unknown function | 1 | 22172 | 22435 |
| YP_009005221.1 | NC_023560_p11 | Phage replication initiation | phrog_1163 | unknown function | unknown function | 1 | 5626 | 6552 |