Genomic map of Oenococcus phage phiS13 (NC_023560)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023560
Definition
Oenococcus phage phiS13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
43454
Host Name
Oenococcus oeni
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
38.96
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009005252.1 NC_023560_p42 hypothetical protein phrog_13237 unknown function unknown function 1 32765 33184
YP_009005253.1 NC_023560_p43 hypothetical protein phrog_23900 unknown function unknown function 1 33184 33558
YP_009005235.1 NC_023560_p25 Phage portal phrog_64 portal protein head and packaging 1 14385 15857
YP_009005215.1 NC_023560_p5 hypothetical protein phrog_13553 unknown function unknown function 1 2532 2720
YP_009005258.1 NC_023560_p48 hypothetical protein singleton unknown function unknown function 1 36251 37009
YP_009005223.1 NC_023560_p13 hypothetical protein phrog_11894 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 6707 7075
YP_009005244.1 NC_023560_p34 hypothetical protein phrog_78 tail terminator connector 1 20799 21152
YP_009005229.1 NC_023560_p19 hypothetical protein phrog_22525 unknown function unknown function 1 10871 11149
YP_009005246.1 NC_023560_p36 hypothetical protein phrog_183 tail chaperone protein tail 1 21681 22082
YP_009005214.1 NC_023560_p4 hypothetical protein phrog_17849 unknown function unknown function 1 2245 2490
YP_009005216.1 NC_023560_p6 hypothetical protein phrog_19177 unknown function unknown function 1 2860 3021
YP_009005224.1 NC_023560_p14 prophage protein phrog_248 transcriptional activator transcription regulation 1 7087 7575
YP_009005230.1 NC_023560_p20 hypothetical protein phrog_20346 unknown function unknown function 1 11222 11452
YP_009005226.1 NC_023560_p16 hypothetical protein singleton unknown function unknown function 1 8868 9167
YP_009005233.1 NC_023560_p23 Phage terminase small subunit phrog_51 terminase small subunit head and packaging 1 12319 13080
YP_009005238.1 NC_023560_p28 scaffold protein phrog_172 head scaffolding protein head and packaging 1 17455 18114
YP_009005227.1 NC_023560_p17 hypothetical protein singleton unknown function unknown function -1 9286 9462
YP_009005222.1 NC_023560_p12 hypothetical protein phrog_15154 unknown function unknown function 1 6552 6710
YP_009005254.1 NC_023560_p44 lysin phrog_291 endolysin lysis 1 33641 34933
YP_009005240.1 NC_023560_p30 phage major head protein phrog_29 major head protein head and packaging 1 18520 19560
YP_009005250.1 NC_023560_p40 prophage protein phrog_22212 unknown function unknown function 1 27491 32458
YP_009005245.1 NC_023560_p35 major tail protein phrog_158 major tail protein tail 1 21155 21619
YP_009005251.1 NC_023560_p41 hypothetical protein phrog_17369 unknown function unknown function 1 32479 32787
YP_009005255.1 NC_023560_p45 Hol44 phrog_19617 holin lysis 1 34944 35309
YP_009005257.1 NC_023560_p47 hypothetical protein phrog_20939 unknown function unknown function 1 35939 36181
YP_009005212.1 NC_023560_p2 hypothetical protein phrog_13670 unknown function unknown function -1 1392 1679
YP_009005232.1 NC_023560_p22 prophage protein phrog_21290 unknown function unknown function 1 11811 12281
YP_009005261.1 NC_023560_p51 hypothetical protein phrog_26225 unknown function unknown function 1 39615 40952
YP_009005218.1 NC_023560_p8 hypothetical protein phrog_674 unknown function unknown function 1 3413 4339
YP_009005234.1 NC_023560_p24 Phage large terminase small subunit phrog_2 terminase large subunit head and packaging 1 13070 14365
YP_009005263.1 NC_023560_p53 hypothetical protein phrog_6148 beta-lactamase-inhibitor protein BLIP moron, auxiliary metabolic gene and host takeover 1 42228 42659
YP_009005259.1 NC_023560_p49 hypothetical protein singleton unknown function unknown function -1 37037 37330
YP_009005242.1 NC_023560_p32 hypothetical protein phrog_2168 unknown function unknown function 1 19881 20240
YP_009005249.1 NC_023560_p39 hypothetical protein phrog_1194 unknown function unknown function 1 27104 27469
YP_009005256.1 NC_023560_p46 hypothetical protein singleton unknown function unknown function 1 35444 35875
YP_009005236.1 NC_023560_p26 hypothetical protein phrog_4478 peptidase other 1 15817 16110
YP_009005239.1 NC_023560_p29 prophage protein phrog_909 major head protein head and packaging 1 18132 18488
YP_009005213.1 NC_023560_p3 Phage transcription regulator, Cro/C1 family phrog_8 transcriptional regulator transcription regulation -1 1684 1995
YP_009005211.1 NC_023560_p1 Phage integrase phrog_1 integrase integration and excision -1 231 1274
YP_009005241.1 NC_023560_p31 hypothetical protein phrog_132 head-tail adaptor connector 1 19579 19884
YP_009005231.1 NC_023560_p21 hypothetical protein phrog_2277 unknown function unknown function -1 11449 11655
YP_009005248.1 NC_023560_p38 Phage tail length tape-measure protein phrog_1535 tail length tape measure protein tail 1 22471 27087
YP_009005217.1 NC_023560_p7 hypothetical protein phrog_23368 unknown function unknown function 1 2999 3394
YP_009005262.1 NC_023560_p52 Bactoprenol glucosyl transferase phrog_841 GtrB-like O-antigen conversion moron, auxiliary metabolic gene and host takeover 1 40971 41921
YP_009005264.1 NC_023560_p54 hypothetical protein phrog_26308 unknown function unknown function 1 42677 42952
YP_009005260.1 NC_023560_p50 hypothetical protein phrog_585 unknown function unknown function -1 39002 39412
YP_009005237.1 NC_023560_p27 minor head protein phrog_115 minor head protein head and packaging 1 16113 17291
YP_009005228.1 NC_023560_p18 prophage protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 9559 10764
YP_009005219.1 NC_023560_p9 phage nucleotide-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 4336 5052
YP_009005243.1 NC_023560_p33 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 20233 20784
YP_009005225.1 NC_023560_p15 hypothetical protein phrog_36082 unknown function unknown function 1 7733 8521
YP_009005220.1 NC_023560_p10 prophage Lp2 protein 18 phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 5042 5614
YP_009005247.1 NC_023560_p37 hypothetical protein phrog_2066 unknown function unknown function 1 22172 22435
YP_009005221.1 NC_023560_p11 Phage replication initiation phrog_1163 unknown function unknown function 1 5626 6552