| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023569 |
Definition |
Vibrio phage SHOU24, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
77837 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
46.04 |
Number of singletons |
56 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009006478.1 | NC_023569_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66351 | 66983 |
| YP_009006464.1 | NC_023569_p63 | two-component system histidine kinase | singleton | unknown function | unknown function | -1 | 54063 | 54542 |
| YP_009006447.1 | NC_023569_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37806 | 38069 |
| YP_009006413.1 | NC_023569_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6720 | 7691 |
| YP_009006443.1 | NC_023569_p42 | isopentenyl-diphosphate delta-isomerase | phrog_37986 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35313 | 35807 |
| YP_009006458.1 | NC_023569_p57 | hypothetical protein | phrog_2134 | unknown function | unknown function | -1 | 47380 | 47784 |
| YP_009006440.1 | NC_023569_p39 | DNA mismatch repair protein | singleton | unknown function | unknown function | 1 | 34104 | 34286 |
| YP_009006454.1 | NC_023569_p53 | molecular chaperone GroES | phrog_3188 | co-chaperonin GroES | other | 1 | 41867 | 42262 |
| YP_009006456.1 | NC_023569_p55 | membrane protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 42768 | 43901 |
| YP_009006419.1 | NC_023569_p18 | hypothetical protein | phrog_10818 | unknown function | unknown function | 1 | 11516 | 13828 |
| YP_009006484.1 | NC_023569_p83 | hypothetical protein | phrog_3934 | unknown function | unknown function | -1 | 69468 | 69860 |
| YP_009006494.1 | NC_023569_p93 | carbon monoxide dehydrogenase large subunit | singleton | unknown function | unknown function | 1 | 76291 | 76491 |
| YP_009006437.1 | NC_023569_p36 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 27322 | 28902 |
| YP_009006481.1 | NC_023569_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 68126 | 68677 |
| YP_009006438.1 | NC_023569_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29051 | 30040 |
| YP_009006469.1 | NC_023569_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56902 | 57879 |
| YP_009006430.1 | NC_023569_p29 | K1E myramoyl peptidase | phrog_894 | endolysin | lysis | 1 | 20426 | 20836 |
| YP_009006450.1 | NC_023569_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38692 | 38826 |
| YP_009006474.1 | NC_023569_p73 | hypothetical protein | phrog_33023 | unknown function | unknown function | -1 | 60721 | 62196 |
| YP_009006411.1 | NC_023569_p10 | DNA ligase (ATP) | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4535 | 5968 |
| YP_009006453.1 | NC_023569_p52 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 41227 | 41874 |
| YP_009006495.1 | NC_023569_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76478 | 76894 |
| YP_009006424.1 | NC_023569_p23 | helix-turn-helix domain-containing protein | singleton | unknown function | unknown function | 1 | 15364 | 15738 |
| YP_009006497.1 | NC_023569_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 77610 | 77774 |
| YP_009006446.1 | NC_023569_p45 | DNA methylase | phrog_56 | DNA methyltransferase | other | 1 | 37045 | 37806 |
| YP_009006444.1 | NC_023569_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35800 | 35970 |
| YP_009006441.1 | NC_023569_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34347 | 34880 |
| YP_009006496.1 | NC_023569_p95 | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | singleton | unknown function | unknown function | 1 | 76922 | 77236 |
| YP_009006442.1 | NC_023569_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34994 | 35191 |
| YP_009006479.1 | NC_023569_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67171 | 67527 |
| YP_009006412.1 | NC_023569_p11 | transcriptional regulator | phrog_13512 | transcriptional regulator | transcription regulation | 1 | 6188 | 6730 |
| YP_009006448.1 | NC_023569_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38077 | 38241 |
| YP_009006433.1 | NC_023569_p32 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 21818 | 23170 |
| YP_009006434.1 | NC_023569_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23249 | 23536 |
| YP_009006418.1 | NC_023569_p17 | hypothetical protein | phrog_32509 | unknown function | unknown function | 1 | 10324 | 11514 |
| YP_009006488.1 | NC_023569_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 72375 | 72524 |
| YP_009006471.1 | NC_023569_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58369 | 58845 |
| YP_009006439.1 | NC_023569_p38 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 30122 | 34090 |
| YP_009006406.1 | NC_023569_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2641 | 3042 |
| YP_009006467.1 | NC_023569_p66 | hydrophobe/amphiphile efflux-1 (HAE1) family transporter | singleton | unknown function | unknown function | -1 | 55889 | 56329 |
| YP_009006483.1 | NC_023569_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69142 | 69411 |
| YP_009006426.1 | NC_023569_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16170 | 18629 |
| YP_009006473.1 | NC_023569_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60244 | 60705 |
| YP_009006420.1 | NC_023569_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14146 | 14427 |
| YP_009006452.1 | NC_023569_p51 | double-stranded DNA repair protein Rad50 | phrog_28217 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39051 | 41180 |
| YP_009006405.1 | NC_023569_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2312 | 2641 |
| YP_009006461.1 | NC_023569_p60 | hypothetical protein | phrog_9696 | tail length tape measure protein | tail | -1 | 48988 | 53109 |
| YP_009006476.1 | NC_023569_p75 | hypothetical protein | phrog_675 | terminase large subunit | head and packaging | 1 | 63729 | 65603 |
| YP_009006451.1 | NC_023569_p50 | RDD domain containing protein | singleton | unknown function | unknown function | 1 | 38833 | 39048 |
| YP_009006492.1 | NC_023569_p91 | hypothetical protein | phrog_37583 | unknown function | unknown function | 1 | 75226 | 75645 |
| YP_009006490.1 | NC_023569_p89 | hypothetical protein | phrog_37583 | unknown function | unknown function | 1 | 74323 | 74703 |
| YP_009006455.1 | NC_023569_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42383 | 42754 |
| YP_009006466.1 | NC_023569_p65 | minor tail protein | phrog_290 | minor tail protein | tail | -1 | 54909 | 55868 |
| YP_009006477.1 | NC_023569_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65858 | 66202 |
| YP_009006480.1 | NC_023569_p79 | deoxyribose-phosphate aldolase | phrog_17479 | unknown function | unknown function | -1 | 67558 | 68124 |
| YP_009006414.1 | NC_023569_p13 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 7694 | 8140 |
| YP_009006421.1 | NC_023569_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14436 | 14864 |
| YP_009006463.1 | NC_023569_p62 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 53530 | 53979 |
| YP_009006409.1 | NC_023569_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3678 | 3845 |
| YP_009006465.1 | NC_023569_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54539 | 54793 |
| YP_009006486.1 | NC_023569_p85 | protein NnrU | singleton | unknown function | unknown function | 1 | 71374 | 71583 |
| YP_009006417.1 | NC_023569_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9959 | 10321 |
| YP_009006493.1 | NC_023569_p92 | 5-formyltetrahydrofolate cyclo-ligase | singleton | unknown function | unknown function | 1 | 75753 | 76283 |
| YP_009006472.1 | NC_023569_p71 | hypothetical protein | phrog_3922 | major head protein | head and packaging | -1 | 58953 | 60197 |
| YP_009006470.1 | NC_023569_p69 | amino acid adenylation protein | singleton | unknown function | unknown function | -1 | 57888 | 58367 |
| YP_009006445.1 | NC_023569_p44 | hypothetical protein | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35987 | 37045 |
| YP_009006462.1 | NC_023569_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53171 | 53305 |
| YP_009006408.1 | NC_023569_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3496 | 3681 |
| YP_009006431.1 | NC_023569_p30 | ATP-dependent DNA helicase | singleton | unknown function | unknown function | 1 | 20839 | 21195 |
| YP_009006402.1 | NC_023569_p1 | hypothetical protein | phrog_624 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 155 | 652 |
| YP_009006487.1 | NC_023569_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71762 | 72091 |
| YP_009006410.1 | NC_023569_p9 | hypothetical protein | phrog_2314 | unknown function | unknown function | 1 | 3886 | 4503 |
| YP_009006428.1 | NC_023569_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19389 | 19892 |
| YP_009006404.1 | NC_023569_p3 | 1-deoxy-D-xylulose-5-phosphate synthase | singleton | unknown function | unknown function | 1 | 1167 | 2207 |
| YP_009006435.1 | NC_023569_p34 | hypothetical protein | phrog_16345 | primase | DNA, RNA and nucleotide metabolism | 1 | 23560 | 26523 |
| YP_009006459.1 | NC_023569_p58 | hypothetical protein | phrog_2048 | tail protein | tail | -1 | 47784 | 48371 |
| YP_009006432.1 | NC_023569_p31 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | 1 | 21192 | 21791 |
| YP_009006489.1 | NC_023569_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 72545 | 74296 |
| YP_009006449.1 | NC_023569_p48 | phenazine biosynthesis protein PhzF | singleton | unknown function | unknown function | 1 | 38244 | 38702 |
| YP_009006407.1 | NC_023569_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3071 | 3496 |
| YP_009006482.1 | NC_023569_p81 | topoisomerase IV subunit A | singleton | unknown function | unknown function | -1 | 68706 | 69113 |
| YP_009006429.1 | NC_023569_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19917 | 20399 |
| YP_009006427.1 | NC_023569_p26 | hypothetical protein | phrog_799 | DNA methyltransferase | other | 1 | 18746 | 19381 |
| YP_009006436.1 | NC_023569_p35 | modification methylase BamHII | phrog_67 | DNA methyltransferase | other | 1 | 26598 | 27317 |
| YP_009006416.1 | NC_023569_p15 | 3'-5' exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 9326 | 9862 |
| YP_009006423.1 | NC_023569_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15021 | 15242 |
| YP_009006485.1 | NC_023569_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70246 | 71346 |
| YP_009006457.1 | NC_023569_p56 | host specificity protein J | phrog_31 | central tail fiber J | tail | -1 | 43898 | 47380 |
| YP_009006475.1 | NC_023569_p74 | hypothetical protein | phrog_3753 | portal protein | head and packaging | -1 | 62207 | 63655 |
| YP_009006422.1 | NC_023569_p21 | hypothetical protein | phrog_16916 | unknown function | unknown function | 1 | 14839 | 15024 |
| YP_009006403.1 | NC_023569_p2 | PhoH | singleton | unknown function | unknown function | 1 | 676 | 1137 |
| YP_009006415.1 | NC_023569_p14 | recombinase | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 8170 | 9336 |
| YP_009006491.1 | NC_023569_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74843 | 75106 |
| YP_009006460.1 | NC_023569_p59 | hypothetical protein | phrog_1302 | distal tail protein | tail | -1 | 48371 | 48976 |
| YP_009006468.1 | NC_023569_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56319 | 56900 |
| YP_009006425.1 | NC_023569_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15946 | 16206 |