Genomic map of Vibrio phage SHOU24 (NC_023569)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023569
Definition
Vibrio phage SHOU24, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
77837
Host Name
Vibrio parahaemolyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
96
%GC
46.04
Number of singletons
56
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009006478.1 NC_023569_p77 hypothetical protein singleton unknown function unknown function -1 66351 66983
YP_009006464.1 NC_023569_p63 two-component system histidine kinase singleton unknown function unknown function -1 54063 54542
YP_009006447.1 NC_023569_p46 hypothetical protein singleton unknown function unknown function 1 37806 38069
YP_009006413.1 NC_023569_p12 hypothetical protein singleton unknown function unknown function 1 6720 7691
YP_009006443.1 NC_023569_p42 isopentenyl-diphosphate delta-isomerase phrog_37986 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 35313 35807
YP_009006458.1 NC_023569_p57 hypothetical protein phrog_2134 unknown function unknown function -1 47380 47784
YP_009006440.1 NC_023569_p39 DNA mismatch repair protein singleton unknown function unknown function 1 34104 34286
YP_009006454.1 NC_023569_p53 molecular chaperone GroES phrog_3188 co-chaperonin GroES other 1 41867 42262
YP_009006456.1 NC_023569_p55 membrane protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover -1 42768 43901
YP_009006419.1 NC_023569_p18 hypothetical protein phrog_10818 unknown function unknown function 1 11516 13828
YP_009006484.1 NC_023569_p83 hypothetical protein phrog_3934 unknown function unknown function -1 69468 69860
YP_009006494.1 NC_023569_p93 carbon monoxide dehydrogenase large subunit singleton unknown function unknown function 1 76291 76491
YP_009006437.1 NC_023569_p36 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 27322 28902
YP_009006481.1 NC_023569_p80 hypothetical protein singleton unknown function unknown function -1 68126 68677
YP_009006438.1 NC_023569_p37 hypothetical protein singleton unknown function unknown function 1 29051 30040
YP_009006469.1 NC_023569_p68 hypothetical protein singleton unknown function unknown function -1 56902 57879
YP_009006430.1 NC_023569_p29 K1E myramoyl peptidase phrog_894 endolysin lysis 1 20426 20836
YP_009006450.1 NC_023569_p49 hypothetical protein singleton unknown function unknown function 1 38692 38826
YP_009006474.1 NC_023569_p73 hypothetical protein phrog_33023 unknown function unknown function -1 60721 62196
YP_009006411.1 NC_023569_p10 DNA ligase (ATP) phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4535 5968
YP_009006453.1 NC_023569_p52 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 41227 41874
YP_009006495.1 NC_023569_p94 hypothetical protein singleton unknown function unknown function 1 76478 76894
YP_009006424.1 NC_023569_p23 helix-turn-helix domain-containing protein singleton unknown function unknown function 1 15364 15738
YP_009006497.1 NC_023569_p96 hypothetical protein singleton unknown function unknown function -1 77610 77774
YP_009006446.1 NC_023569_p45 DNA methylase phrog_56 DNA methyltransferase other 1 37045 37806
YP_009006444.1 NC_023569_p43 hypothetical protein singleton unknown function unknown function 1 35800 35970
YP_009006441.1 NC_023569_p40 hypothetical protein singleton unknown function unknown function 1 34347 34880
YP_009006496.1 NC_023569_p95 phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase singleton unknown function unknown function 1 76922 77236
YP_009006442.1 NC_023569_p41 hypothetical protein singleton unknown function unknown function 1 34994 35191
YP_009006479.1 NC_023569_p78 hypothetical protein singleton unknown function unknown function -1 67171 67527
YP_009006412.1 NC_023569_p11 transcriptional regulator phrog_13512 transcriptional regulator transcription regulation 1 6188 6730
YP_009006448.1 NC_023569_p47 hypothetical protein singleton unknown function unknown function 1 38077 38241
YP_009006433.1 NC_023569_p32 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 21818 23170
YP_009006434.1 NC_023569_p33 hypothetical protein singleton unknown function unknown function 1 23249 23536
YP_009006418.1 NC_023569_p17 hypothetical protein phrog_32509 unknown function unknown function 1 10324 11514
YP_009006488.1 NC_023569_p87 hypothetical protein singleton unknown function unknown function 1 72375 72524
YP_009006471.1 NC_023569_p70 hypothetical protein singleton unknown function unknown function -1 58369 58845
YP_009006439.1 NC_023569_p38 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 30122 34090
YP_009006406.1 NC_023569_p5 hypothetical protein singleton unknown function unknown function 1 2641 3042
YP_009006467.1 NC_023569_p66 hydrophobe/amphiphile efflux-1 (HAE1) family transporter singleton unknown function unknown function -1 55889 56329
YP_009006483.1 NC_023569_p82 hypothetical protein singleton unknown function unknown function -1 69142 69411
YP_009006426.1 NC_023569_p25 hypothetical protein singleton unknown function unknown function 1 16170 18629
YP_009006473.1 NC_023569_p72 hypothetical protein singleton unknown function unknown function -1 60244 60705
YP_009006420.1 NC_023569_p19 hypothetical protein singleton unknown function unknown function 1 14146 14427
YP_009006452.1 NC_023569_p51 double-stranded DNA repair protein Rad50 phrog_28217 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 39051 41180
YP_009006405.1 NC_023569_p4 hypothetical protein singleton unknown function unknown function 1 2312 2641
YP_009006461.1 NC_023569_p60 hypothetical protein phrog_9696 tail length tape measure protein tail -1 48988 53109
YP_009006476.1 NC_023569_p75 hypothetical protein phrog_675 terminase large subunit head and packaging 1 63729 65603
YP_009006451.1 NC_023569_p50 RDD domain containing protein singleton unknown function unknown function 1 38833 39048
YP_009006492.1 NC_023569_p91 hypothetical protein phrog_37583 unknown function unknown function 1 75226 75645
YP_009006490.1 NC_023569_p89 hypothetical protein phrog_37583 unknown function unknown function 1 74323 74703
YP_009006455.1 NC_023569_p54 hypothetical protein singleton unknown function unknown function 1 42383 42754
YP_009006466.1 NC_023569_p65 minor tail protein phrog_290 minor tail protein tail -1 54909 55868
YP_009006477.1 NC_023569_p76 hypothetical protein singleton unknown function unknown function -1 65858 66202
YP_009006480.1 NC_023569_p79 deoxyribose-phosphate aldolase phrog_17479 unknown function unknown function -1 67558 68124
YP_009006414.1 NC_023569_p13 hypothetical protein phrog_335 phosphatase other 1 7694 8140
YP_009006421.1 NC_023569_p20 hypothetical protein singleton unknown function unknown function 1 14436 14864
YP_009006463.1 NC_023569_p62 hypothetical protein phrog_313 Tail assembly chaperone tail -1 53530 53979
YP_009006409.1 NC_023569_p8 hypothetical protein singleton unknown function unknown function 1 3678 3845
YP_009006465.1 NC_023569_p64 hypothetical protein singleton unknown function unknown function -1 54539 54793
YP_009006486.1 NC_023569_p85 protein NnrU singleton unknown function unknown function 1 71374 71583
YP_009006417.1 NC_023569_p16 hypothetical protein singleton unknown function unknown function 1 9959 10321
YP_009006493.1 NC_023569_p92 5-formyltetrahydrofolate cyclo-ligase singleton unknown function unknown function 1 75753 76283
YP_009006472.1 NC_023569_p71 hypothetical protein phrog_3922 major head protein head and packaging -1 58953 60197
YP_009006470.1 NC_023569_p69 amino acid adenylation protein singleton unknown function unknown function -1 57888 58367
YP_009006445.1 NC_023569_p44 hypothetical protein phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 35987 37045
YP_009006462.1 NC_023569_p61 hypothetical protein singleton unknown function unknown function -1 53171 53305
YP_009006408.1 NC_023569_p7 hypothetical protein singleton unknown function unknown function 1 3496 3681
YP_009006431.1 NC_023569_p30 ATP-dependent DNA helicase singleton unknown function unknown function 1 20839 21195
YP_009006402.1 NC_023569_p1 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism 1 155 652
YP_009006487.1 NC_023569_p86 hypothetical protein singleton unknown function unknown function -1 71762 72091
YP_009006410.1 NC_023569_p9 hypothetical protein phrog_2314 unknown function unknown function 1 3886 4503
YP_009006428.1 NC_023569_p27 hypothetical protein singleton unknown function unknown function 1 19389 19892
YP_009006404.1 NC_023569_p3 1-deoxy-D-xylulose-5-phosphate synthase singleton unknown function unknown function 1 1167 2207
YP_009006435.1 NC_023569_p34 hypothetical protein phrog_16345 primase DNA, RNA and nucleotide metabolism 1 23560 26523
YP_009006459.1 NC_023569_p58 hypothetical protein phrog_2048 tail protein tail -1 47784 48371
YP_009006432.1 NC_023569_p31 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other 1 21192 21791
YP_009006489.1 NC_023569_p88 hypothetical protein singleton unknown function unknown function 1 72545 74296
YP_009006449.1 NC_023569_p48 phenazine biosynthesis protein PhzF singleton unknown function unknown function 1 38244 38702
YP_009006407.1 NC_023569_p6 hypothetical protein singleton unknown function unknown function 1 3071 3496
YP_009006482.1 NC_023569_p81 topoisomerase IV subunit A singleton unknown function unknown function -1 68706 69113
YP_009006429.1 NC_023569_p28 hypothetical protein singleton unknown function unknown function 1 19917 20399
YP_009006427.1 NC_023569_p26 hypothetical protein phrog_799 DNA methyltransferase other 1 18746 19381
YP_009006436.1 NC_023569_p35 modification methylase BamHII phrog_67 DNA methyltransferase other 1 26598 27317
YP_009006416.1 NC_023569_p15 3'-5' exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 9326 9862
YP_009006423.1 NC_023569_p22 hypothetical protein singleton unknown function unknown function 1 15021 15242
YP_009006485.1 NC_023569_p84 hypothetical protein singleton unknown function unknown function 1 70246 71346
YP_009006457.1 NC_023569_p56 host specificity protein J phrog_31 central tail fiber J tail -1 43898 47380
YP_009006475.1 NC_023569_p74 hypothetical protein phrog_3753 portal protein head and packaging -1 62207 63655
YP_009006422.1 NC_023569_p21 hypothetical protein phrog_16916 unknown function unknown function 1 14839 15024
YP_009006403.1 NC_023569_p2 PhoH singleton unknown function unknown function 1 676 1137
YP_009006415.1 NC_023569_p14 recombinase phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 8170 9336
YP_009006491.1 NC_023569_p90 hypothetical protein singleton unknown function unknown function 1 74843 75106
YP_009006460.1 NC_023569_p59 hypothetical protein phrog_1302 distal tail protein tail -1 48371 48976
YP_009006468.1 NC_023569_p67 hypothetical protein singleton unknown function unknown function -1 56319 56900
YP_009006425.1 NC_023569_p24 hypothetical protein singleton unknown function unknown function 1 15946 16206