| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023575 |
Definition |
Pseudomonas phage vB_PaeP_Tr60_Ab31. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
45550 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
57.1 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009007080.1 | NC_023575_p13 | internal virion B | phrog_418 | internal virion protein | head and packaging | 1 | 9970 | 10434 |
| YP_009007134.1 | NC_023575_p67 | Hypothetical protein | phrog_26918 | unknown function | unknown function | -1 | 44466 | 44669 |
| YP_009007110.1 | NC_023575_p43 | Hypothetical protein | phrog_21577 | unknown function | unknown function | -1 | 33836 | 33949 |
| YP_009007115.1 | NC_023575_p48 | Hypothetical protein | singleton | unknown function | unknown function | -1 | 36017 | 36169 |
| YP_009007068.1 | NC_023575_p1 | terminase small subunit | phrog_309 | terminase small subunit | head and packaging | 1 | 60 | 506 |
| YP_009007090.1 | NC_023575_p23 | Hypothetical protein | phrog_4029 | unknown function | unknown function | -1 | 23643 | 24053 |
| YP_009007084.1 | NC_023575_p17 | tail fibre protein | phrog_1640 | tail protein | tail | 1 | 16909 | 19260 |
| YP_009007092.1 | NC_023575_p25 | Hypothetical protein | phrog_5614 | unknown function | unknown function | -1 | 24325 | 24810 |
| YP_009007079.1 | NC_023575_p12 | Hypothetical protein | phrog_308 | internal virion protein | head and packaging | 1 | 9506 | 9985 |
| YP_009007073.1 | NC_023575_p6 | endoprotease | phrog_458 | protease | other | 1 | 4221 | 4844 |
| YP_009007097.1 | NC_023575_p30 | Hypothetical protein | phrog_11504 | unknown function | unknown function | -1 | 25922 | 26713 |
| YP_009007077.1 | NC_023575_p10 | tail tubular protein A | phrog_394 | tail protein | tail | 1 | 6560 | 7189 |
| YP_009007094.1 | NC_023575_p27 | Hypothetical protein | phrog_37698 | unknown function | unknown function | -1 | 25088 | 25330 |
| YP_009007070.1 | NC_023575_p3 | Hypothetical protein | phrog_4893 | unknown function | unknown function | 1 | 1968 | 2222 |
| YP_009007130.1 | NC_023575_p63 | antitermination Q protein | phrog_79 | anti-termination protein Q-like | transcription regulation | 1 | 42587 | 42961 |
| YP_009007131.1 | NC_023575_p64 | Hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 43453 | 43845 |
| YP_009007122.1 | NC_023575_p55 | replication protein P | phrog_109 | P-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 39638 | 40288 |
| YP_009007120.1 | NC_023575_p53 | Hypothetical protein | singleton | unknown function | unknown function | 1 | 38548 | 38760 |
| YP_009007074.1 | NC_023575_p7 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 4857 | 5861 |
| YP_009007117.1 | NC_023575_p50 | Cro/CI transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 37289 | 38104 |
| YP_009007078.1 | NC_023575_p11 | Hypothetical protein | phrog_376 | tail protein | tail | 1 | 7186 | 9525 |
| YP_009007102.1 | NC_023575_p35 | Hypothetical protein | phrog_12813 | unknown function | unknown function | -1 | 29284 | 29883 |
| YP_009007099.1 | NC_023575_p32 | Hypothetical protein | phrog_3956 | unknown function | unknown function | -1 | 27230 | 28642 |
| YP_009007125.1 | NC_023575_p58 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40621 | 41166 |
| YP_009007123.1 | NC_023575_p56 | Hypothetical protein | phrog_17140 | unknown function | unknown function | 1 | 40285 | 40437 |
| YP_009007133.1 | NC_023575_p66 | Hypothetical protein | phrog_3865 | unknown function | unknown function | -1 | 44267 | 44485 |
| YP_009007136.1 | NC_023575_p69 | lysis protein | phrog_13 | Rz-like spanin | lysis | 1 | 44936 | 45379 |
| YP_009007103.1 | NC_023575_p36 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29947 | 30393 |
| YP_009007091.1 | NC_023575_p24 | Hypothetical protein | phrog_343 | unknown function | unknown function | -1 | 24053 | 24322 |
| YP_009007083.1 | NC_023575_p16 | Hypothetical protein | phrog_684 | virion structural protein | head and packaging | 1 | 14269 | 16845 |
| YP_009007085.1 | NC_023575_p18 | peptidoglycan O-acetyltransferase | phrog_6705 | O-antigen acetylase | moron, auxiliary metabolic gene and host takeover | -1 | 19261 | 21189 |
| YP_009007095.1 | NC_023575_p28 | Hypothetical protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 25323 | 25646 |
| YP_009007132.1 | NC_023575_p65 | endolysin | phrog_938 | endolysin | lysis | 1 | 43842 | 44258 |
| YP_009007088.1 | NC_023575_p21 | Hypothetical protein | phrog_5086 | unknown function | unknown function | -1 | 22934 | 23278 |
| YP_009007093.1 | NC_023575_p26 | Hypothetical protein | phrog_5315 | unknown function | unknown function | -1 | 24795 | 24944 |
| YP_009007072.1 | NC_023575_p5 | Hypothetical protein | phrog_528 | unknown function | unknown function | 1 | 3913 | 4224 |
| YP_009007104.1 | NC_023575_p37 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 30390 | 31016 |
| YP_009007100.1 | NC_023575_p33 | Hypothetical protein | phrog_16171 | unknown function | unknown function | -1 | 28909 | 29121 |
| YP_009007135.1 | NC_023575_p68 | Hypothetical protein | phrog_21424 | unknown function | unknown function | 1 | 44767 | 44943 |
| YP_009007109.1 | NC_023575_p42 | Hypothetical protein | phrog_292 | unknown function | unknown function | -1 | 33669 | 33839 |
| YP_009007124.1 | NC_023575_p57 | Hypothetical protein | phrog_13309 | unknown function | unknown function | 1 | 40434 | 40649 |
| YP_009007116.1 | NC_023575_p49 | Hypothetical protein | singleton | unknown function | unknown function | -1 | 36354 | 36536 |
| YP_009007108.1 | NC_023575_p41 | Hypothetical protein | phrog_874 | unknown function | unknown function | -1 | 32986 | 33672 |
| YP_009007106.1 | NC_023575_p39 | Hypothetical protein | phrog_1376 | unknown function | unknown function | -1 | 31754 | 32818 |
| YP_009007105.1 | NC_023575_p38 | recombination protein Bet | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31000 | 31746 |
| YP_009007089.1 | NC_023575_p22 | Hypothetical protein | phrog_4029 | unknown function | unknown function | -1 | 23275 | 23646 |
| YP_009007128.1 | NC_023575_p61 | Hypothetical protein | phrog_37266 | unknown function | unknown function | 1 | 41839 | 41952 |
| YP_009007081.1 | NC_023575_p14 | structural lysozyme | phrog_1044 | endolysin | lysis | 1 | 10434 | 12533 |
| YP_009007101.1 | NC_023575_p34 | Hypothetical protein | phrog_10492 | unknown function | unknown function | -1 | 29118 | 29303 |
| YP_009007127.1 | NC_023575_p60 | Hypothetical protein | phrog_2529 | unknown function | unknown function | 1 | 41579 | 41842 |
| YP_009007098.1 | NC_023575_p31 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26716 | 27237 |
| YP_009007119.1 | NC_023575_p52 | Hypothetical protein | singleton | unknown function | unknown function | 1 | 38320 | 38529 |
| YP_009007071.1 | NC_023575_p4 | head-tail connector | phrog_332 | head-tail adaptor | connector | 1 | 2224 | 3912 |
| YP_009007076.1 | NC_023575_p9 | Hypothetical protein | phrog_14119 | unknown function | unknown function | 1 | 6341 | 6514 |
| YP_009007069.1 | NC_023575_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 487 | 1956 |
| YP_009007111.1 | NC_023575_p44 | Hypothetical protein | phrog_4801 | unknown function | unknown function | -1 | 33946 | 34311 |
| YP_009007121.1 | NC_023575_p54 | replication protein O | phrog_678 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 38829 | 39638 |
| YP_009007118.1 | NC_023575_p51 | repressor | phrog_35 | transcriptional repressor | transcription regulation | 1 | 38103 | 38306 |
| YP_009007129.1 | NC_023575_p62 | ninG protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41949 | 42590 |
| YP_009007112.1 | NC_023575_p45 | Hypothetical protein | phrog_22771 | unknown function | unknown function | -1 | 34320 | 34760 |
| YP_009007126.1 | NC_023575_p59 | ninB protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 41166 | 41582 |
| YP_009007086.1 | NC_023575_p19 | Site-specific DNA recombinase | phrog_1 | integrase | integration and excision | 1 | 21643 | 22617 |
| YP_009007075.1 | NC_023575_p8 | hypothetical protein | phrog_427 | unknown function | unknown function | 1 | 5872 | 6330 |
| YP_009007114.1 | NC_023575_p47 | Hypothetical protein | phrog_31114 | unknown function | unknown function | -1 | 35571 | 36008 |
| YP_009007107.1 | NC_023575_p40 | Hypothetical protein | phrog_5864 | unknown function | unknown function | -1 | 32861 | 32989 |
| YP_009007082.1 | NC_023575_p15 | Hypothetical protein | phrog_3003 | unknown function | unknown function | 1 | 12530 | 14269 |
| YP_009007113.1 | NC_023575_p46 | Hypothetical protein | phrog_2650 | unknown function | unknown function | -1 | 35159 | 35536 |
| YP_009007096.1 | NC_023575_p29 | Hypothetical protein | phrog_13613 | unknown function | unknown function | -1 | 25650 | 25922 |
| YP_009007087.1 | NC_023575_p20 | Hypothetical protein | phrog_6355 | unknown function | unknown function | -1 | 22614 | 22859 |