Genomic map of Pseudomonas phage vB_PaeP_Tr60_Ab31 (NC_023575)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023575
Definition
Pseudomonas phage vB_PaeP_Tr60_Ab31.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
45550
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
57.1
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009007080.1 NC_023575_p13 internal virion B phrog_418 internal virion protein head and packaging 1 9970 10434
YP_009007134.1 NC_023575_p67 Hypothetical protein phrog_26918 unknown function unknown function -1 44466 44669
YP_009007110.1 NC_023575_p43 Hypothetical protein phrog_21577 unknown function unknown function -1 33836 33949
YP_009007115.1 NC_023575_p48 Hypothetical protein singleton unknown function unknown function -1 36017 36169
YP_009007068.1 NC_023575_p1 terminase small subunit phrog_309 terminase small subunit head and packaging 1 60 506
YP_009007090.1 NC_023575_p23 Hypothetical protein phrog_4029 unknown function unknown function -1 23643 24053
YP_009007084.1 NC_023575_p17 tail fibre protein phrog_1640 tail protein tail 1 16909 19260
YP_009007092.1 NC_023575_p25 Hypothetical protein phrog_5614 unknown function unknown function -1 24325 24810
YP_009007079.1 NC_023575_p12 Hypothetical protein phrog_308 internal virion protein head and packaging 1 9506 9985
YP_009007073.1 NC_023575_p6 endoprotease phrog_458 protease other 1 4221 4844
YP_009007097.1 NC_023575_p30 Hypothetical protein phrog_11504 unknown function unknown function -1 25922 26713
YP_009007077.1 NC_023575_p10 tail tubular protein A phrog_394 tail protein tail 1 6560 7189
YP_009007094.1 NC_023575_p27 Hypothetical protein phrog_37698 unknown function unknown function -1 25088 25330
YP_009007070.1 NC_023575_p3 Hypothetical protein phrog_4893 unknown function unknown function 1 1968 2222
YP_009007130.1 NC_023575_p63 antitermination Q protein phrog_79 anti-termination protein Q-like transcription regulation 1 42587 42961
YP_009007131.1 NC_023575_p64 Hypothetical protein phrog_1024 unknown function unknown function 1 43453 43845
YP_009007122.1 NC_023575_p55 replication protein P phrog_109 P-like helicase loader DNA, RNA and nucleotide metabolism 1 39638 40288
YP_009007120.1 NC_023575_p53 Hypothetical protein singleton unknown function unknown function 1 38548 38760
YP_009007074.1 NC_023575_p7 major capsid protein phrog_212 major head protein head and packaging 1 4857 5861
YP_009007117.1 NC_023575_p50 Cro/CI transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 37289 38104
YP_009007078.1 NC_023575_p11 Hypothetical protein phrog_376 tail protein tail 1 7186 9525
YP_009007102.1 NC_023575_p35 Hypothetical protein phrog_12813 unknown function unknown function -1 29284 29883
YP_009007099.1 NC_023575_p32 Hypothetical protein phrog_3956 unknown function unknown function -1 27230 28642
YP_009007125.1 NC_023575_p58 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40621 41166
YP_009007123.1 NC_023575_p56 Hypothetical protein phrog_17140 unknown function unknown function 1 40285 40437
YP_009007133.1 NC_023575_p66 Hypothetical protein phrog_3865 unknown function unknown function -1 44267 44485
YP_009007136.1 NC_023575_p69 lysis protein phrog_13 Rz-like spanin lysis 1 44936 45379
YP_009007103.1 NC_023575_p36 ssDNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 29947 30393
YP_009007091.1 NC_023575_p24 Hypothetical protein phrog_343 unknown function unknown function -1 24053 24322
YP_009007083.1 NC_023575_p16 Hypothetical protein phrog_684 virion structural protein head and packaging 1 14269 16845
YP_009007085.1 NC_023575_p18 peptidoglycan O-acetyltransferase phrog_6705 O-antigen acetylase moron, auxiliary metabolic gene and host takeover -1 19261 21189
YP_009007095.1 NC_023575_p28 Hypothetical protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 25323 25646
YP_009007132.1 NC_023575_p65 endolysin phrog_938 endolysin lysis 1 43842 44258
YP_009007088.1 NC_023575_p21 Hypothetical protein phrog_5086 unknown function unknown function -1 22934 23278
YP_009007093.1 NC_023575_p26 Hypothetical protein phrog_5315 unknown function unknown function -1 24795 24944
YP_009007072.1 NC_023575_p5 Hypothetical protein phrog_528 unknown function unknown function 1 3913 4224
YP_009007104.1 NC_023575_p37 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 30390 31016
YP_009007100.1 NC_023575_p33 Hypothetical protein phrog_16171 unknown function unknown function -1 28909 29121
YP_009007135.1 NC_023575_p68 Hypothetical protein phrog_21424 unknown function unknown function 1 44767 44943
YP_009007109.1 NC_023575_p42 Hypothetical protein phrog_292 unknown function unknown function -1 33669 33839
YP_009007124.1 NC_023575_p57 Hypothetical protein phrog_13309 unknown function unknown function 1 40434 40649
YP_009007116.1 NC_023575_p49 Hypothetical protein singleton unknown function unknown function -1 36354 36536
YP_009007108.1 NC_023575_p41 Hypothetical protein phrog_874 unknown function unknown function -1 32986 33672
YP_009007106.1 NC_023575_p39 Hypothetical protein phrog_1376 unknown function unknown function -1 31754 32818
YP_009007105.1 NC_023575_p38 recombination protein Bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31000 31746
YP_009007089.1 NC_023575_p22 Hypothetical protein phrog_4029 unknown function unknown function -1 23275 23646
YP_009007128.1 NC_023575_p61 Hypothetical protein phrog_37266 unknown function unknown function 1 41839 41952
YP_009007081.1 NC_023575_p14 structural lysozyme phrog_1044 endolysin lysis 1 10434 12533
YP_009007101.1 NC_023575_p34 Hypothetical protein phrog_10492 unknown function unknown function -1 29118 29303
YP_009007127.1 NC_023575_p60 Hypothetical protein phrog_2529 unknown function unknown function 1 41579 41842
YP_009007098.1 NC_023575_p31 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26716 27237
YP_009007119.1 NC_023575_p52 Hypothetical protein singleton unknown function unknown function 1 38320 38529
YP_009007071.1 NC_023575_p4 head-tail connector phrog_332 head-tail adaptor connector 1 2224 3912
YP_009007076.1 NC_023575_p9 Hypothetical protein phrog_14119 unknown function unknown function 1 6341 6514
YP_009007069.1 NC_023575_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 487 1956
YP_009007111.1 NC_023575_p44 Hypothetical protein phrog_4801 unknown function unknown function -1 33946 34311
YP_009007121.1 NC_023575_p54 replication protein O phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 1 38829 39638
YP_009007118.1 NC_023575_p51 repressor phrog_35 transcriptional repressor transcription regulation 1 38103 38306
YP_009007129.1 NC_023575_p62 ninG protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 41949 42590
YP_009007112.1 NC_023575_p45 Hypothetical protein phrog_22771 unknown function unknown function -1 34320 34760
YP_009007126.1 NC_023575_p59 ninB protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 41166 41582
YP_009007086.1 NC_023575_p19 Site-specific DNA recombinase phrog_1 integrase integration and excision 1 21643 22617
YP_009007075.1 NC_023575_p8 hypothetical protein phrog_427 unknown function unknown function 1 5872 6330
YP_009007114.1 NC_023575_p47 Hypothetical protein phrog_31114 unknown function unknown function -1 35571 36008
YP_009007107.1 NC_023575_p40 Hypothetical protein phrog_5864 unknown function unknown function -1 32861 32989
YP_009007082.1 NC_023575_p15 Hypothetical protein phrog_3003 unknown function unknown function 1 12530 14269
YP_009007113.1 NC_023575_p46 Hypothetical protein phrog_2650 unknown function unknown function -1 35159 35536
YP_009007096.1 NC_023575_p29 Hypothetical protein phrog_13613 unknown function unknown function -1 25650 25922
YP_009007087.1 NC_023575_p20 Hypothetical protein phrog_6355 unknown function unknown function -1 22614 22859