| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023576 |
Definition |
Citrobacter phage CR44b complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Citrobacter virus CR44b. |
DB of origin |
REFSEQ |
Length |
39207 |
Host Name |
Citrobacter rodentium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
50.49 |
Number of singletons |
5 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009007182.1 | NC_023576_p46 | predicted internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 28511 | 32398 |
| YP_009007183.1 | NC_023576_p47 | predicted tail fiber protein | phrog_31166 | tail fiber protein | tail | 1 | 32462 | 33922 |
| YP_009007153.1 | NC_023576_p17 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 9627 | 9842 |
| YP_009007145.1 | NC_023576_p9 | predicted DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 5457 | 6485 |
| YP_009007155.1 | NC_023576_p19 | predicted helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 10061 | 11611 |
| YP_009007170.1 | NC_023576_p34 | predicted homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17133 | 17549 |
| YP_009007154.1 | NC_023576_p18 | predicted primase helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9911 | 11611 |
| YP_009007166.1 | NC_023576_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16027 | 16224 |
| YP_009007177.1 | NC_023576_p41 | predicted tail tube protein B | phrog_457 | tail protein | tail | 1 | 22287 | 24659 |
| YP_009007137.1 | NC_023576_p1 | predicted antirestriction protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 818 | 1162 |
| YP_009007180.1 | NC_023576_p44 | predicted internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25795 | 28077 |
| YP_009007144.1 | NC_023576_p8 | hypothetical protein | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 5161 | 5439 |
| YP_009007139.1 | NC_023576_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1333 | 1551 |
| YP_009007151.1 | NC_023576_p15 | hypothetical protein | phrog_16385 | unknown function | unknown function | 1 | 8684 | 9154 |
| YP_009007169.1 | NC_023576_p33 | conserved phage virion protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16888 | 17136 |
| YP_009007174.1 | NC_023576_p38 | predicted major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20246 | 21289 |
| YP_009007189.1 | NC_023576_p53 | predicted homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35742 | 36179 |
| YP_009007138.1 | NC_023576_p2 | hypothetical protein | phrog_5058 | unknown function | unknown function | 1 | 1162 | 1314 |
| YP_009007160.1 | NC_023576_p24 | predicted DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12243 | 14411 |
| YP_009007152.1 | NC_023576_p16 | predicted amidase (lysozyme) | phrog_822 | amidase | lysis | 1 | 9144 | 9602 |
| YP_009007167.1 | NC_023576_p31 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 16262 | 16486 |
| YP_009007157.1 | NC_023576_p21 | hypothetical protein | phrog_13039 | unknown function | unknown function | 1 | 11623 | 11787 |
| YP_009007149.1 | NC_023576_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8075 | 8290 |
| YP_009007165.1 | NC_023576_p29 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 15975 | 16247 |
| YP_009007186.1 | NC_023576_p50 | predicted DNA packaging protein | phrog_1351 | terminase small subunit | head and packaging | 1 | 34950 | 35213 |
| YP_009007143.1 | NC_023576_p7 | hypothetical protein | phrog_4383 | unknown function | unknown function | 1 | 4972 | 5151 |
| YP_009007188.1 | NC_023576_p52 | conserved hypotethical phage protein | phrog_4306 | Rz-like spanin | lysis | 1 | 35415 | 35684 |
| YP_009007172.1 | NC_023576_p36 | predicted capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19226 | 20110 |
| YP_009028571.1 | NC_023576_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36815 | 36982 |
| YP_009007140.1 | NC_023576_p4 | hypothetical protein | phrog_7066 | unknown function | unknown function | 1 | 1548 | 1808 |
| YP_009007175.1 | NC_023576_p39 | predicted tail tube protein A | phrog_446 | tail protein | tail | 1 | 21487 | 22053 |
| YP_009007173.1 | NC_023576_p37 | predicted minor capside protein | phrog_267 | major head protein | head and packaging | 1 | 20246 | 21420 |
| YP_009007148.1 | NC_023576_p12 | predicted helix-destabilizing protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7534 | 8232 |
| YP_009007150.1 | NC_023576_p14 | predicted endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8232 | 8684 |
| YP_009007191.1 | NC_023576_p56 | predicted homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37950 | 38366 |
| YP_009007181.1 | NC_023576_p45 | predicted homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28080 | 28529 |
| YP_009007164.1 | NC_023576_p28 | predicted exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14898 | 15764 |
| YP_009007187.1 | NC_023576_p51 | conserved hypotethical phage protein | phrog_1327 | Rz-like spanin | lysis | 1 | 35315 | 35752 |
| YP_009007142.1 | NC_023576_p6 | hypothetical protein | phrog_8082 | unknown function | unknown function | 1 | 4600 | 4800 |
| YP_009007162.1 | NC_023576_p26 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 14411 | 14695 |
| YP_009007190.1 | NC_023576_p54 | predicted DNA packaging protein | phrog_38 | terminase large subunit | head and packaging | 1 | 36172 | 37938 |
| YP_009007156.1 | NC_023576_p20 | conserved hypothetical conserved phage protein | phrog_5140 | unknown function | unknown function | 1 | 11340 | 11639 |
| YP_009007158.1 | NC_023576_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11678 | 11827 |
| YP_009007147.1 | NC_023576_p11 | predicted bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 7316 | 7474 |
| YP_009007184.1 | NC_023576_p48 | phage virion protein | phrog_22156 | unknown function | unknown function | 1 | 33922 | 34743 |
| YP_009007171.1 | NC_023576_p35 | predicted head to tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 17542 | 19110 |
| YP_009007141.1 | NC_023576_p5 | predicted RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1906 | 4587 |
| YP_009007192.1 | NC_023576_p57 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38631 | 38789 |
| YP_009007178.1 | NC_023576_p42 | predicted internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24736 | 25194 |
| YP_009007168.1 | NC_023576_p32 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16338 | 16895 |
| YP_009007161.1 | NC_023576_p25 | hypothetical protein | phrog_17900 | unknown function | unknown function | 1 | 14411 | 14901 |
| YP_009007146.1 | NC_023576_p10 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 6649 | 6909 |
| YP_009007159.1 | NC_023576_p23 | predicted homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11851 | 12252 |
| YP_009007179.1 | NC_023576_p43 | predicted internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 25196 | 25783 |
| YP_009007176.1 | NC_023576_p40 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 22053 | 22277 |
| YP_009007185.1 | NC_023576_p49 | predicted lysis protein | phrog_920 | holin | lysis | 1 | 34759 | 34953 |
| YP_009007163.1 | NC_023576_p27 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 14692 | 14901 |