Genomic map of Citrobacter phage CR44b (NC_023576)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023576
Definition
Citrobacter phage CR44b complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Citrobacter virus CR44b.
DB of origin
REFSEQ
Length
39207
Host Name
Citrobacter rodentium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
50.49
Number of singletons
5
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009007182.1 NC_023576_p46 predicted internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 28511 32398
YP_009007183.1 NC_023576_p47 predicted tail fiber protein phrog_31166 tail fiber protein tail 1 32462 33922
YP_009007153.1 NC_023576_p17 hypothetical protein phrog_1950 unknown function unknown function 1 9627 9842
YP_009007145.1 NC_023576_p9 predicted DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 5457 6485
YP_009007155.1 NC_023576_p19 predicted helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 10061 11611
YP_009007170.1 NC_023576_p34 predicted homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17133 17549
YP_009007154.1 NC_023576_p18 predicted primase helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9911 11611
YP_009007166.1 NC_023576_p30 hypothetical protein singleton unknown function unknown function 1 16027 16224
YP_009007177.1 NC_023576_p41 predicted tail tube protein B phrog_457 tail protein tail 1 22287 24659
YP_009007137.1 NC_023576_p1 predicted antirestriction protein phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 818 1162
YP_009007180.1 NC_023576_p44 predicted internal virion protein C phrog_1339 internal virion protein head and packaging 1 25795 28077
YP_009007144.1 NC_023576_p8 hypothetical protein phrog_2949 dGTPase inhibitor; target for F exclusion other 1 5161 5439
YP_009007139.1 NC_023576_p3 hypothetical protein singleton unknown function unknown function 1 1333 1551
YP_009007151.1 NC_023576_p15 hypothetical protein phrog_16385 unknown function unknown function 1 8684 9154
YP_009007169.1 NC_023576_p33 conserved phage virion protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16888 17136
YP_009007174.1 NC_023576_p38 predicted major capsid protein phrog_267 major head protein head and packaging 1 20246 21289
YP_009007189.1 NC_023576_p53 predicted homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35742 36179
YP_009007138.1 NC_023576_p2 hypothetical protein phrog_5058 unknown function unknown function 1 1162 1314
YP_009007160.1 NC_023576_p24 predicted DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12243 14411
YP_009007152.1 NC_023576_p16 predicted amidase (lysozyme) phrog_822 amidase lysis 1 9144 9602
YP_009007167.1 NC_023576_p31 hypothetical protein phrog_1391 unknown function unknown function 1 16262 16486
YP_009007157.1 NC_023576_p21 hypothetical protein phrog_13039 unknown function unknown function 1 11623 11787
YP_009007149.1 NC_023576_p13 hypothetical protein singleton unknown function unknown function 1 8075 8290
YP_009007165.1 NC_023576_p29 hypothetical protein phrog_1447 unknown function unknown function 1 15975 16247
YP_009007186.1 NC_023576_p50 predicted DNA packaging protein phrog_1351 terminase small subunit head and packaging 1 34950 35213
YP_009007143.1 NC_023576_p7 hypothetical protein phrog_4383 unknown function unknown function 1 4972 5151
YP_009007188.1 NC_023576_p52 conserved hypotethical phage protein phrog_4306 Rz-like spanin lysis 1 35415 35684
YP_009007172.1 NC_023576_p36 predicted capsid assembly protein phrog_1052 head assembly head and packaging 1 19226 20110
YP_009028571.1 NC_023576_p55 hypothetical protein singleton unknown function unknown function 1 36815 36982
YP_009007140.1 NC_023576_p4 hypothetical protein phrog_7066 unknown function unknown function 1 1548 1808
YP_009007175.1 NC_023576_p39 predicted tail tube protein A phrog_446 tail protein tail 1 21487 22053
YP_009007173.1 NC_023576_p37 predicted minor capside protein phrog_267 major head protein head and packaging 1 20246 21420
YP_009007148.1 NC_023576_p12 predicted helix-destabilizing protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7534 8232
YP_009007150.1 NC_023576_p14 predicted endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 8232 8684
YP_009007191.1 NC_023576_p56 predicted homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37950 38366
YP_009007181.1 NC_023576_p45 predicted homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 28080 28529
YP_009007164.1 NC_023576_p28 predicted exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14898 15764
YP_009007187.1 NC_023576_p51 conserved hypotethical phage protein phrog_1327 Rz-like spanin lysis 1 35315 35752
YP_009007142.1 NC_023576_p6 hypothetical protein phrog_8082 unknown function unknown function 1 4600 4800
YP_009007162.1 NC_023576_p26 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 14411 14695
YP_009007190.1 NC_023576_p54 predicted DNA packaging protein phrog_38 terminase large subunit head and packaging 1 36172 37938
YP_009007156.1 NC_023576_p20 conserved hypothetical conserved phage protein phrog_5140 unknown function unknown function 1 11340 11639
YP_009007158.1 NC_023576_p22 hypothetical protein singleton unknown function unknown function 1 11678 11827
YP_009007147.1 NC_023576_p11 predicted bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 7316 7474
YP_009007184.1 NC_023576_p48 phage virion protein phrog_22156 unknown function unknown function 1 33922 34743
YP_009007171.1 NC_023576_p35 predicted head to tail connector protein phrog_449 head-tail adaptor connector 1 17542 19110
YP_009007141.1 NC_023576_p5 predicted RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1906 4587
YP_009007192.1 NC_023576_p57 hypothetical protein phrog_2193 unknown function unknown function 1 38631 38789
YP_009007178.1 NC_023576_p42 predicted internal virion protein A phrog_308 internal virion protein head and packaging 1 24736 25194
YP_009007168.1 NC_023576_p32 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16338 16895
YP_009007161.1 NC_023576_p25 hypothetical protein phrog_17900 unknown function unknown function 1 14411 14901
YP_009007146.1 NC_023576_p10 hypothetical protein phrog_1777 unknown function unknown function 1 6649 6909
YP_009007159.1 NC_023576_p23 predicted homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 11851 12252
YP_009007179.1 NC_023576_p43 predicted internal virion protein B phrog_805 internal virion protein head and packaging 1 25196 25783
YP_009007176.1 NC_023576_p40 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 22053 22277
YP_009007185.1 NC_023576_p49 predicted lysis protein phrog_920 holin lysis 1 34759 34953
YP_009007163.1 NC_023576_p27 hypothetical protein phrog_1334 unknown function unknown function 1 14692 14901