| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023578 |
Definition |
Mycobacterium phage Oaker, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
69099 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
57.54 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009007312.1 | NC_023578_p31 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 29987 | 30955 |
| YP_009007318.1 | NC_023578_p37 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 33596 | 34111 |
| YP_009007300.1 | NC_023578_p19 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 13260 | 13622 |
| YP_009007302.1 | NC_023578_p21 | hypothetical protein | phrog_12447 | unknown function | unknown function | 1 | 14125 | 14451 |
| YP_009007304.1 | NC_023578_p23 | major tail subunit | phrog_4971 | major tail protein | tail | 1 | 14685 | 15533 |
| YP_009007323.1 | NC_023578_p42 | hypothetical protein | phrog_16702 | unknown function | unknown function | 1 | 38374 | 38730 |
| YP_009007286.1 | NC_023578_p5 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2389 | 4098 |
| YP_009007355.1 | NC_023578_p74 | hypothetical protein | phrog_15802 | unknown function | unknown function | 1 | 55172 | 55399 |
| YP_009007343.1 | NC_023578_p62 | hypothetical protein | phrog_4392 | unknown function | unknown function | 1 | 48655 | 48993 |
| YP_009007297.1 | NC_023578_p16 | hypothetical protein | phrog_5318 | unknown function | unknown function | 1 | 11887 | 12498 |
| YP_009007287.1 | NC_023578_p6 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 4128 | 5741 |
| YP_009007315.1 | NC_023578_p34 | lysin A | phrog_1512 | endolysin | lysis | 1 | 31663 | 32628 |
| YP_009007282.1 | NC_023578_p1 | hypothetical protein | phrog_5460 | unknown function | unknown function | 1 | 1 | 348 |
| YP_009007359.1 | NC_023578_p78 | hypothetical protein | phrog_17115 | unknown function | unknown function | 1 | 59424 | 60029 |
| YP_009007309.1 | NC_023578_p28 | minor tail protein | phrog_1885 | minor tail protein | tail | 1 | 24284 | 25939 |
| YP_009007329.1 | NC_023578_p48 | hypothetical protein | phrog_21085 | unknown function | unknown function | 1 | 40730 | 41086 |
| YP_009007311.1 | NC_023578_p30 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 28782 | 29990 |
| YP_009007352.1 | NC_023578_p71 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 52771 | 53139 |
| YP_009007345.1 | NC_023578_p64 | hypothetical protein | phrog_12020 | unknown function | unknown function | 1 | 49488 | 50033 |
| YP_009007332.1 | NC_023578_p51 | hypothetical protein | phrog_17169 | unknown function | unknown function | 1 | 42072 | 42395 |
| YP_009007337.1 | NC_023578_p56 | hypothetical protein | phrog_7933 | unknown function | unknown function | 1 | 44662 | 44892 |
| YP_009007294.1 | NC_023578_p13 | hypothetical protein | phrog_4866 | head scaffolding protein | head and packaging | 1 | 9169 | 9933 |
| YP_009007298.1 | NC_023578_p17 | hypothetical protein | phrog_5274 | unknown function | unknown function | 1 | 12511 | 12882 |
| YP_009007372.1 | NC_023578_p91 | primase/polymerase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 65369 | 68305 |
| YP_009007331.1 | NC_023578_p50 | hypothetical protein | phrog_16414 | unknown function | unknown function | 1 | 41708 | 42034 |
| YP_009007317.1 | NC_023578_p36 | holin | phrog_1298 | minor tail protein | tail | 1 | 33133 | 33612 |
| YP_009007319.1 | NC_023578_p38 | lysin B | phrog_102 | endolysin | lysis | 1 | 34095 | 35336 |
| YP_009007326.1 | NC_023578_p45 | hypothetical protein | phrog_19432 | unknown function | unknown function | 1 | 39632 | 40027 |
| YP_009007347.1 | NC_023578_p66 | hypothetical protein | phrog_18085 | unknown function | unknown function | 1 | 50336 | 50683 |
| YP_009007358.1 | NC_023578_p77 | DNA polymerase III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 56089 | 59412 |
| YP_009007353.1 | NC_023578_p72 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 53171 | 54247 |
| YP_009007316.1 | NC_023578_p35 | holin | phrog_565 | holin | lysis | 1 | 32640 | 33101 |
| YP_009007368.1 | NC_023578_p87 | hypothetical protein | phrog_17433 | unknown function | unknown function | 1 | 63631 | 63924 |
| YP_009007301.1 | NC_023578_p20 | hypothetical protein | phrog_4995 | unknown function | unknown function | 1 | 13619 | 14077 |
| YP_009007363.1 | NC_023578_p82 | hypothetical protein | phrog_17654 | unknown function | unknown function | 1 | 61417 | 61749 |
| YP_009007364.1 | NC_023578_p83 | hypothetical protein | phrog_14975 | unknown function | unknown function | 1 | 61746 | 62021 |
| YP_009007338.1 | NC_023578_p57 | hypothetical protein | phrog_14477 | helicase | DNA, RNA and nucleotide metabolism | 1 | 45208 | 45438 |
| YP_009007305.1 | NC_023578_p24 | tail assembly chaperone | phrog_4336 | tail assembly chaperone | tail | 1 | 15627 | 16172 |
| YP_009007357.1 | NC_023578_p76 | hypothetical protein | phrog_1342 | unknown function | unknown function | 1 | 55686 | 56087 |
| YP_009007360.1 | NC_023578_p79 | hypothetical protein | phrog_1981 | unknown function | unknown function | 1 | 60029 | 60781 |
| YP_009007290.1 | NC_023578_p9 | hypothetical protein | phrog_16007 | unknown function | unknown function | 1 | 6698 | 6994 |
| YP_009007303.1 | NC_023578_p22 | hypothetical protein | phrog_5278 | unknown function | unknown function | 1 | 14471 | 14668 |
| YP_009007293.1 | NC_023578_p12 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 8223 | 9143 |
| YP_009007289.1 | NC_023578_p8 | hypothetical protein | phrog_19343 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 6366 | 6698 |
| YP_009007344.1 | NC_023578_p63 | hypothetical protein | phrog_17402 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 48990 | 49340 |
| YP_009007314.1 | NC_023578_p33 | hypothetical protein | phrog_12784 | unknown function | unknown function | 1 | 31393 | 31593 |
| YP_009007328.1 | NC_023578_p47 | hypothetical protein | phrog_1587 | unknown function | unknown function | 1 | 40392 | 40727 |
| YP_009007324.1 | NC_023578_p43 | hypothetical protein | phrog_19599 | unknown function | unknown function | 1 | 38876 | 39259 |
| YP_009007335.1 | NC_023578_p54 | hypothetical protein | phrog_5326 | unknown function | unknown function | 1 | 44292 | 44468 |
| YP_009007341.1 | NC_023578_p60 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 46344 | 48401 |
| YP_009007339.1 | NC_023578_p58 | hypothetical protein | phrog_12472 | unknown function | unknown function | 1 | 45443 | 45763 |
| YP_009007313.1 | NC_023578_p32 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 30969 | 31376 |
| YP_009007292.1 | NC_023578_p11 | protease | phrog_5556 | tail protein | tail | 1 | 7768 | 8226 |
| YP_009007295.1 | NC_023578_p14 | hypothetical protein | phrog_5042 | unknown function | unknown function | 1 | 10037 | 10543 |
| YP_009007367.1 | NC_023578_p86 | hypothetical protein | phrog_16806 | unknown function | unknown function | 1 | 62969 | 63634 |
| YP_009007296.1 | NC_023578_p15 | major capsid protein | phrog_3990 | major head protein | head and packaging | 1 | 10585 | 11817 |
| YP_009007291.1 | NC_023578_p10 | hypothetical protein | phrog_12708 | head maturation protease | head and packaging | 1 | 6991 | 7764 |
| YP_009007307.1 | NC_023578_p26 | tapemeasure | phrog_6435 | tail length tape measure protein | tail | 1 | 16492 | 22815 |
| YP_009007366.1 | NC_023578_p85 | hypothetical protein | phrog_3848 | unknown function | unknown function | 1 | 62599 | 62967 |
| YP_009007336.1 | NC_023578_p55 | hypothetical protein | phrog_19761 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 44465 | 44665 |
| YP_009007330.1 | NC_023578_p49 | hypothetical protein | phrog_17421 | unknown function | unknown function | 1 | 41183 | 41569 |
| YP_009007288.1 | NC_023578_p7 | hypothetical protein | phrog_1375 | unknown function | unknown function | 1 | 5972 | 6172 |
| YP_009007342.1 | NC_023578_p61 | hypothetical protein | phrog_13855 | unknown function | unknown function | 1 | 48398 | 48658 |
| YP_009007346.1 | NC_023578_p65 | hypothetical protein | phrog_18821 | unknown function | unknown function | 1 | 50211 | 50339 |
| YP_009007283.1 | NC_023578_p2 | terminase small subunit | phrog_10899 | terminase small subunit | head and packaging | 1 | 355 | 1668 |
| YP_009007370.1 | NC_023578_p89 | hypothetical protein | phrog_18727 | unknown function | unknown function | 1 | 64343 | 64693 |
| YP_009007351.1 | NC_023578_p70 | hypothetical protein | phrog_20994 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 52465 | 52728 |
| YP_009007354.1 | NC_023578_p73 | hypothetical protein | phrog_12070 | unknown function | unknown function | 1 | 54328 | 54948 |
| YP_009007365.1 | NC_023578_p84 | hypothetical protein | phrog_15815 | unknown function | unknown function | 1 | 62018 | 62593 |
| YP_009007284.1 | NC_023578_p3 | hypothetical protein | phrog_12672 | unknown function | unknown function | 1 | 1682 | 1930 |
| YP_009007333.1 | NC_023578_p52 | hypothetical protein | phrog_18114 | unknown function | unknown function | 1 | 42398 | 42832 |
| YP_009007340.1 | NC_023578_p59 | hypothetical protein | phrog_5307 | unknown function | unknown function | 1 | 45750 | 46316 |
| YP_009007310.1 | NC_023578_p29 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 25939 | 28782 |
| YP_009007308.1 | NC_023578_p27 | minor tail protein | phrog_7161 | minor tail protein | tail | 1 | 22812 | 24314 |
| YP_009007349.1 | NC_023578_p68 | hypothetical protein | phrog_21624 | unknown function | unknown function | 1 | 51999 | 52313 |
| YP_009007356.1 | NC_023578_p75 | hypothetical protein | phrog_15225 | unknown function | unknown function | 1 | 55396 | 55689 |
| YP_009007334.1 | NC_023578_p53 | hypothetical protein | phrog_1221 | unknown function | unknown function | 1 | 42980 | 44191 |
| YP_009007306.1 | NC_023578_p25 | tail assembly chaperone | phrog_6778 | tail assembly chaperone | tail | 1 | 16225 | 16473 |
| YP_009007285.1 | NC_023578_p4 | hypothetical protein | phrog_25277 | unknown function | unknown function | 1 | 2128 | 2379 |
| YP_009007299.1 | NC_023578_p18 | hypothetical protein | phrog_4904 | unknown function | unknown function | 1 | 12884 | 13267 |
| YP_009007321.1 | NC_023578_p40 | hypothetical protein | phrog_636 | unknown function | unknown function | 1 | 37263 | 37895 |
| YP_009007325.1 | NC_023578_p44 | hypothetical protein | phrog_12994 | unknown function | unknown function | 1 | 39256 | 39534 |
| YP_009007362.1 | NC_023578_p81 | hypothetical protein | phrog_19237 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 61124 | 61420 |
| YP_009007322.1 | NC_023578_p41 | hypothetical protein | phrog_8253 | unknown function | unknown function | 1 | 38011 | 38280 |
| YP_009007320.1 | NC_023578_p39 | hypothetical protein | phrog_10981 | unknown function | unknown function | 1 | 35346 | 35708 |
| YP_009007369.1 | NC_023578_p88 | hypothetical protein | phrog_17566 | unknown function | unknown function | 1 | 63921 | 64325 |
| YP_009007361.1 | NC_023578_p80 | hypothetical protein | phrog_16155 | unknown function | unknown function | 1 | 60876 | 61127 |
| YP_009007348.1 | NC_023578_p67 | hypothetical protein | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 50680 | 52002 |
| YP_009007350.1 | NC_023578_p69 | hypothetical protein | phrog_19475 | unknown function | unknown function | 1 | 52310 | 52468 |
| YP_009007371.1 | NC_023578_p90 | hypothetical protein | phrog_18975 | unknown function | unknown function | 1 | 64951 | 65379 |
| YP_009007327.1 | NC_023578_p46 | hypothetical protein | phrog_21012 | unknown function | unknown function | 1 | 40112 | 40297 |
| YP_009007373.1 | NC_023578_p92 | hypothetical protein | phrog_26497 | polymerase | DNA, RNA and nucleotide metabolism | 1 | 68302 | 68532 |