Genomic map of Mycobacterium phage Oaker (NC_023578)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023578
Definition
Mycobacterium phage Oaker, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
69099
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
92
%GC
57.54
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009007312.1 NC_023578_p31 minor tail protein phrog_553 minor tail protein tail 1 29987 30955
YP_009007318.1 NC_023578_p37 hypothetical protein phrog_726 unknown function unknown function 1 33596 34111
YP_009007300.1 NC_023578_p19 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 13260 13622
YP_009007302.1 NC_023578_p21 hypothetical protein phrog_12447 unknown function unknown function 1 14125 14451
YP_009007304.1 NC_023578_p23 major tail subunit phrog_4971 major tail protein tail 1 14685 15533
YP_009007323.1 NC_023578_p42 hypothetical protein phrog_16702 unknown function unknown function 1 38374 38730
YP_009007286.1 NC_023578_p5 terminase large subunit phrog_2 terminase large subunit head and packaging 1 2389 4098
YP_009007355.1 NC_023578_p74 hypothetical protein phrog_15802 unknown function unknown function 1 55172 55399
YP_009007343.1 NC_023578_p62 hypothetical protein phrog_4392 unknown function unknown function 1 48655 48993
YP_009007297.1 NC_023578_p16 hypothetical protein phrog_5318 unknown function unknown function 1 11887 12498
YP_009007287.1 NC_023578_p6 portal protein phrog_64 portal protein head and packaging 1 4128 5741
YP_009007315.1 NC_023578_p34 lysin A phrog_1512 endolysin lysis 1 31663 32628
YP_009007282.1 NC_023578_p1 hypothetical protein phrog_5460 unknown function unknown function 1 1 348
YP_009007359.1 NC_023578_p78 hypothetical protein phrog_17115 unknown function unknown function 1 59424 60029
YP_009007309.1 NC_023578_p28 minor tail protein phrog_1885 minor tail protein tail 1 24284 25939
YP_009007329.1 NC_023578_p48 hypothetical protein phrog_21085 unknown function unknown function 1 40730 41086
YP_009007311.1 NC_023578_p30 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 28782 29990
YP_009007352.1 NC_023578_p71 hypothetical protein phrog_549 unknown function unknown function 1 52771 53139
YP_009007345.1 NC_023578_p64 hypothetical protein phrog_12020 unknown function unknown function 1 49488 50033
YP_009007332.1 NC_023578_p51 hypothetical protein phrog_17169 unknown function unknown function 1 42072 42395
YP_009007337.1 NC_023578_p56 hypothetical protein phrog_7933 unknown function unknown function 1 44662 44892
YP_009007294.1 NC_023578_p13 hypothetical protein phrog_4866 head scaffolding protein head and packaging 1 9169 9933
YP_009007298.1 NC_023578_p17 hypothetical protein phrog_5274 unknown function unknown function 1 12511 12882
YP_009007372.1 NC_023578_p91 primase/polymerase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 65369 68305
YP_009007331.1 NC_023578_p50 hypothetical protein phrog_16414 unknown function unknown function 1 41708 42034
YP_009007317.1 NC_023578_p36 holin phrog_1298 minor tail protein tail 1 33133 33612
YP_009007319.1 NC_023578_p38 lysin B phrog_102 endolysin lysis 1 34095 35336
YP_009007326.1 NC_023578_p45 hypothetical protein phrog_19432 unknown function unknown function 1 39632 40027
YP_009007347.1 NC_023578_p66 hypothetical protein phrog_18085 unknown function unknown function 1 50336 50683
YP_009007358.1 NC_023578_p77 DNA polymerase III alpha subunit phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism 1 56089 59412
YP_009007353.1 NC_023578_p72 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 53171 54247
YP_009007316.1 NC_023578_p35 holin phrog_565 holin lysis 1 32640 33101
YP_009007368.1 NC_023578_p87 hypothetical protein phrog_17433 unknown function unknown function 1 63631 63924
YP_009007301.1 NC_023578_p20 hypothetical protein phrog_4995 unknown function unknown function 1 13619 14077
YP_009007363.1 NC_023578_p82 hypothetical protein phrog_17654 unknown function unknown function 1 61417 61749
YP_009007364.1 NC_023578_p83 hypothetical protein phrog_14975 unknown function unknown function 1 61746 62021
YP_009007338.1 NC_023578_p57 hypothetical protein phrog_14477 helicase DNA, RNA and nucleotide metabolism 1 45208 45438
YP_009007305.1 NC_023578_p24 tail assembly chaperone phrog_4336 tail assembly chaperone tail 1 15627 16172
YP_009007357.1 NC_023578_p76 hypothetical protein phrog_1342 unknown function unknown function 1 55686 56087
YP_009007360.1 NC_023578_p79 hypothetical protein phrog_1981 unknown function unknown function 1 60029 60781
YP_009007290.1 NC_023578_p9 hypothetical protein phrog_16007 unknown function unknown function 1 6698 6994
YP_009007303.1 NC_023578_p22 hypothetical protein phrog_5278 unknown function unknown function 1 14471 14668
YP_009007293.1 NC_023578_p12 hypothetical protein phrog_115 minor head protein head and packaging 1 8223 9143
YP_009007289.1 NC_023578_p8 hypothetical protein phrog_19343 membrane protein moron, auxiliary metabolic gene and host takeover 1 6366 6698
YP_009007344.1 NC_023578_p63 hypothetical protein phrog_17402 membrane protein moron, auxiliary metabolic gene and host takeover 1 48990 49340
YP_009007314.1 NC_023578_p33 hypothetical protein phrog_12784 unknown function unknown function 1 31393 31593
YP_009007328.1 NC_023578_p47 hypothetical protein phrog_1587 unknown function unknown function 1 40392 40727
YP_009007324.1 NC_023578_p43 hypothetical protein phrog_19599 unknown function unknown function 1 38876 39259
YP_009007335.1 NC_023578_p54 hypothetical protein phrog_5326 unknown function unknown function 1 44292 44468
YP_009007341.1 NC_023578_p60 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 46344 48401
YP_009007339.1 NC_023578_p58 hypothetical protein phrog_12472 unknown function unknown function 1 45443 45763
YP_009007313.1 NC_023578_p32 hypothetical protein phrog_644 unknown function unknown function 1 30969 31376
YP_009007292.1 NC_023578_p11 protease phrog_5556 tail protein tail 1 7768 8226
YP_009007295.1 NC_023578_p14 hypothetical protein phrog_5042 unknown function unknown function 1 10037 10543
YP_009007367.1 NC_023578_p86 hypothetical protein phrog_16806 unknown function unknown function 1 62969 63634
YP_009007296.1 NC_023578_p15 major capsid protein phrog_3990 major head protein head and packaging 1 10585 11817
YP_009007291.1 NC_023578_p10 hypothetical protein phrog_12708 head maturation protease head and packaging 1 6991 7764
YP_009007307.1 NC_023578_p26 tapemeasure phrog_6435 tail length tape measure protein tail 1 16492 22815
YP_009007366.1 NC_023578_p85 hypothetical protein phrog_3848 unknown function unknown function 1 62599 62967
YP_009007336.1 NC_023578_p55 hypothetical protein phrog_19761 membrane protein moron, auxiliary metabolic gene and host takeover 1 44465 44665
YP_009007330.1 NC_023578_p49 hypothetical protein phrog_17421 unknown function unknown function 1 41183 41569
YP_009007288.1 NC_023578_p7 hypothetical protein phrog_1375 unknown function unknown function 1 5972 6172
YP_009007342.1 NC_023578_p61 hypothetical protein phrog_13855 unknown function unknown function 1 48398 48658
YP_009007346.1 NC_023578_p65 hypothetical protein phrog_18821 unknown function unknown function 1 50211 50339
YP_009007283.1 NC_023578_p2 terminase small subunit phrog_10899 terminase small subunit head and packaging 1 355 1668
YP_009007370.1 NC_023578_p89 hypothetical protein phrog_18727 unknown function unknown function 1 64343 64693
YP_009007351.1 NC_023578_p70 hypothetical protein phrog_20994 membrane protein moron, auxiliary metabolic gene and host takeover 1 52465 52728
YP_009007354.1 NC_023578_p73 hypothetical protein phrog_12070 unknown function unknown function 1 54328 54948
YP_009007365.1 NC_023578_p84 hypothetical protein phrog_15815 unknown function unknown function 1 62018 62593
YP_009007284.1 NC_023578_p3 hypothetical protein phrog_12672 unknown function unknown function 1 1682 1930
YP_009007333.1 NC_023578_p52 hypothetical protein phrog_18114 unknown function unknown function 1 42398 42832
YP_009007340.1 NC_023578_p59 hypothetical protein phrog_5307 unknown function unknown function 1 45750 46316
YP_009007310.1 NC_023578_p29 minor tail protein phrog_346 minor tail protein tail 1 25939 28782
YP_009007308.1 NC_023578_p27 minor tail protein phrog_7161 minor tail protein tail 1 22812 24314
YP_009007349.1 NC_023578_p68 hypothetical protein phrog_21624 unknown function unknown function 1 51999 52313
YP_009007356.1 NC_023578_p75 hypothetical protein phrog_15225 unknown function unknown function 1 55396 55689
YP_009007334.1 NC_023578_p53 hypothetical protein phrog_1221 unknown function unknown function 1 42980 44191
YP_009007306.1 NC_023578_p25 tail assembly chaperone phrog_6778 tail assembly chaperone tail 1 16225 16473
YP_009007285.1 NC_023578_p4 hypothetical protein phrog_25277 unknown function unknown function 1 2128 2379
YP_009007299.1 NC_023578_p18 hypothetical protein phrog_4904 unknown function unknown function 1 12884 13267
YP_009007321.1 NC_023578_p40 hypothetical protein phrog_636 unknown function unknown function 1 37263 37895
YP_009007325.1 NC_023578_p44 hypothetical protein phrog_12994 unknown function unknown function 1 39256 39534
YP_009007362.1 NC_023578_p81 hypothetical protein phrog_19237 membrane protein moron, auxiliary metabolic gene and host takeover 1 61124 61420
YP_009007322.1 NC_023578_p41 hypothetical protein phrog_8253 unknown function unknown function 1 38011 38280
YP_009007320.1 NC_023578_p39 hypothetical protein phrog_10981 unknown function unknown function 1 35346 35708
YP_009007369.1 NC_023578_p88 hypothetical protein phrog_17566 unknown function unknown function 1 63921 64325
YP_009007361.1 NC_023578_p80 hypothetical protein phrog_16155 unknown function unknown function 1 60876 61127
YP_009007348.1 NC_023578_p67 hypothetical protein phrog_1218 exonuclease DNA, RNA and nucleotide metabolism 1 50680 52002
YP_009007350.1 NC_023578_p69 hypothetical protein phrog_19475 unknown function unknown function 1 52310 52468
YP_009007371.1 NC_023578_p90 hypothetical protein phrog_18975 unknown function unknown function 1 64951 65379
YP_009007327.1 NC_023578_p46 hypothetical protein phrog_21012 unknown function unknown function 1 40112 40297
YP_009007373.1 NC_023578_p92 hypothetical protein phrog_26497 polymerase DNA, RNA and nucleotide metabolism 1 68302 68532